NO26G00840, NO26G00840 (gene) Nannochloropsis oceanica

Overview
NameNO26G00840
Unique NameNO26G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2099
Alignment locationchr26:280023..282121 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:280023..282121 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO26G00840 vs. NCBI_GenBank
Match: EWM23124.1 (hypothetical protein Naga_100229g1 [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 4.100e-92
Identity = 201/374 (53.74%), Postives = 243/374 (64.97%), Query Frame = 0
Query:    7 GFPHPVLPLELTRAFLQYLDVSTLLSLASTSKLGLALMDGESGLWKGWADR---RMLYFGAPESNLXXXXXXXXXXXXXXXXXXXXXXXXGGPHPFAAVFPDGEGLDGIDFIGPQSRINVAAFNALRVKAIDSHLAPLLDKMGGKGEGGKTQPCLISTYFQAFDVLVSLRADDAIDAILQDQRRRLFLATSSPSCPSPPFSFSSLPPAPSTLLSPLAVLLALHLLYRSLPPSSRTLPSPYPSCGAWRRRLLSFLAEGPFQGLAVIAFWTMGSHNPQNGFRARDVLKTEKLDLRRVASLLVQGGTKGGMXXXKEE-----MAVERALAKLESLRGMMPTVTLSPAVVYVGGVEDDNTMCVNSQGFFALSSSPPRR 373
            GFP P LPLELTR FL +LD+ TLL+LA TS   L L+D E GLW+ WADR   + +  G   + +                        G P+P++A+FP G   + +    P  R ++AAF+A R K ++SHLAPL +  GG+G GGK QPCL+S YF A+DVLV+LR ++A+DAIL   RRRL       S        S+    P +LLSPL+VLLALHLLYR+                 WR RLLSFLA+GPFQGLAV+AFWTMGSHNPQNGFRARDVLK+EKLDLRR+A LL   G +GG    + E      AVER LAKLESLRGMMPTVTLSPAVVYVGGVE DN+MC N++G+FALSSSPPRR
Sbjct:   10 GFPFPALPLELTRVFLCFLDLPTLLALACTSTAALGLLDREEGLWRLWADRWTPQCMDLGDGSTQI-----------HGSVHESSMLAAAGPPYPWSALFPPGH--EALCLHRPPCRRSLAAFHAARSKVLESHLAPLWE--GGEGAGGKLQPCLVSQYFHAYDVLVTLRGEEAVDAILHAHRRRLQELVRHAS--------SAAYSHPPSLLSPLSVLLALHLLYRA---XXXXXXXXXXXXXXWRGRLLSFLAQGPFQGLAVVAFWTMGSHNPQNGFRARDVLKSEKLDLRRIACLLKGKGREGGREKAQSEEERHGAAVERTLAKLESLRGMMPTVTLSPAVVYVGGVEADNSMCENAEGYFALSSSPPRR 357          
The following BLAST results are available for this feature:
BLAST of NO26G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000Expect = 4.10e-92 / Id = 53.74SequenceEWM23124.1
Match NameE-valueIdentityDescription
EWM23124.14.100e-9253.74hypothetical protein Naga_100229g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005989NSK005989Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00840.1NO26G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600474gene_7906Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100229g1gene7327Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00840.1NO26G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00840 ID=NO26G00840|Name=NO26G00840|organism=Nannochloropsis oceanica|type=gene|length=2099bp
ACAGCCAATTTACCATCGTGCAGAATATTCGGACACCTTTCTGGCCAGCT
TAAAATCTTTTAATTGATTCGATTTGTCGCGCCGGCGATTTGAACAAGAC
AGAATAAACTCGAGGAGCCTTGGGAGCCCACTTGGTGAATTTCAAGATGC
CCCCAAATTCACCGCGCATTTTAATCTATGACGTGAGTGCGTGTCTCCAC
TGTCATTATTTCTGCCGCTCCAGCAGTTCAAGCTGTGGTGAAATTTTGAT
ACCGAGCGCACTGGGTGGCAACGCAACGGACGAGCGTCGCTAACAGCGAT
CAAGTAAAAGGCAAGTCGAGTTGCCGTGTCACTACGATACTTCATATCAC
CGCGCCACACATGATTACTTTAGATGGCCGTGCCACAAACACCCGCACAC
TAACTACAGCACCCACACAGAATCCAAGAGGTTTAATCACCTACGACTGA
CCGTGCTGGCACGAACGAGAAAACAAAGCAAGCAACCATGACAAGCGCCG
CGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCTCACGCGGGCCTTC
CTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGGCTAGCACGAGCAA
GCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTGTGGAAGGGATGGG
CGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAGTAATCTCACCACC
ACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCTCTTCCACTTCATC
TTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCGGCTGTATTTCCCG
ACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCCGCAATCTCGCATT
AATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGATCGATTCACATCT
GGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAGGGAGGGAAGACGC
AGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGACGTGCTGGTGTCG
CTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAGACCAGCGTCGCCG
CCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGCCCCCCGTTCTCCT
TCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAGTCCCCTTGCCGTC
CTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCCCTTCCTCGCGCAC
TCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGGCGCCGCCTCCTCT
CCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGTGATTGCGTTTTGG
ACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGGCACGCGATGTGTT
GAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCCTTGTTGGTGCAGG
GAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGAGATGGCGGTGGAG
AGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGATGCCGACAGTCAC
CTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAGGACGACAATACCA
TGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTCCAGCCCACCTAGA
CGATGATTGAACAGGCAAGCATATCTTTACTCCCTTTTGTCTTCTCAACG
ACATTTAAAATCGCTTTTTTTAAGGAAGTTGTGAGTATAAGAGTAAGATA
TGGGGATATATTGCGTGGGTGAGTATAAGTGTACATTGTATATATAGAGG
AAGCGCCGTTCTAATTATTATGAAATGCGTTGATTACAGGGTCAGAGAAG
GGAGGCCTAAAGAGGTTCTGGGTTCGTCTTTGTGGTGTGTGAATATGTGC
ATTGTCCCAGCGTAATTAAGAGTGTGAAGAAACGTATATCTCCTCTTGTA
CGGGTGGTGGGGTTCCTTTCGTGAGCGACAGCGGGTTTCATCTAGATAAA
GAGGAGCCATACATAAAGGTACATGTATAAATATACATATACATATATAT
GTATGTGTGTGTATTGGTATACATATATGTATGTGTGTATATGTGTGTAG
ATATCTGGGTCTGGTTCTGGGTGTCTGTATGTCTGTATGTCTGGGTGTC
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protein sequence of NO26G00840.1

>NO26G00840.1-protein ID=NO26G00840.1-protein|Name=NO26G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MTSAAAGFPHPVLPLELTRAFLQYLDVSTLLSLASTSKLGLALMDGESGL
WKGWADRRMLYFGAPESNLTTTTSSSAISIHSASSTSSLTTTEGGPHPFA
AVFPDGEGLDGIDFIGPQSRINVAAFNALRVKAIDSHLAPLLDKMGGKGE
GGKTQPCLISTYFQAFDVLVSLRADDAIDAILQDQRRRLFLATSSPSCPS
PPFSFSSLPPAPSTLLSPLAVLLALHLLYRSLPPSSRTLPSPYPSCGAWR
RRLLSFLAEGPFQGLAVIAFWTMGSHNPQNGFRARDVLKTEKLDLRRVAS
LLVQGGTKGGMEGGKEEMAVERALAKLESLRGMMPTVTLSPAVVYVGGVE
DDNTMCVNSQGFFALSSSPPRR*
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Synonyms
Publications