NO26G00840.1, NO26G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00840.1
Unique NameNO26G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2099
Alignment locationchr26:280023..282121 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:280023..282121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO26G00840.1 vs.
Match: EWM23124.1 (hypothetical protein Naga_100229g1 [Nannochloropsis gaditana])

HSP 1 Score: 368.2 bits (944), Expect = 2.900e-98
Identity = 211/371 (56.87%), Postives = 254/371 (68.46%), Query Frame = 0 
Query:    7 GFPHPVLPLELTRAFLQYLDVSTLLSLASTSKLGLALMDGESGLWKGWADRRMLYFGAPESNLTTTTSSSAISIHSASSTSSLTTTEGGPHPFAAVFPDGEGLDGIDFIGPQSRINVAAFNALRVKAIDSHLAPLLDKMGGKGEGGKTQPCLISTYFQAFDVLVSLRADDAIDAILQDQRRRLFLATSSPSCPSPPFSFSSLPPAPSTLLSPLAVLLALHLLYRSLPPSSRTLPSPYPSCGAWRRRLLSFLAEGPFQGLAVIAFWTMGSHNPQNGFRARDVLKTEKLDLRRVASLLVQGGTKGGMEGGKEE-----MAVERALAKLESLRGMMPTVTLSPAVVYVGGVEDDNTMCVNSQGFFALSSSPPRR 373
            GFP P LPLELTR FL +LD+ TLL+LA TS   L L+D E GLW+ WADR       P+          +  IH +   SS+    G P+P++A+FP G   + +    P  R ++AAF+A R K ++SHLAPL +  GG+G GGK QPCL+S YF A+DVLV+LR ++A+DAIL   RRRL       S        S+    P +LLSPL+VLLALHLLYR+ P SS +  S   S   WR RLLSFLA+GPFQGLAV+AFWTMGSHNPQNGFRARDVLK+EKLDLRR+A LL   G +GG E  + E      AVER LAKLESLRGMMPTVTLSPAVVYVGGVE DN+MC N++G+FALSSSPPRR
Sbjct:   10 GFPFPALPLELTRVFLCFLDLPTLLALACTSTAALGLLDREEGLWRLWADR-----WTPQC---MDLGDGSTQIHGSVHESSMLAAAGPPYPWSALFPPGH--EALCLHRPPCRRSLAAFHAARSKVLESHLAPLWE--GGEGAGGKLQPCLVSQYFHAYDVLVTLRGEEAVDAILHAHRRRLQELVRHAS--------SAAYSHPPSLLSPLSVLLALHLLYRATPSSSSSSSS---SSSTWRGRLLSFLAQGPFQGLAVVAFWTMGSHNPQNGFRARDVLKSEKLDLRRIACLLKGKGREGGREKAQSEEERHGAAVERTLAKLESLRGMMPTVTLSPAVVYVGGVEADNSMCENAEGYFALSSSPPRR 357
The following BLAST results are available for this feature:
BLAST of NO26G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23124.12.900e-9856.87hypothetical protein Naga_100229g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00840NO26G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00840.1NO26G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00840.1.cds1NO26G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00840.1 ID=NO26G00840.1|Name=NO26G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp
ACAGCCAATTTACCATCGTGCAGAATATTCGGACACCTTTCTGGCCAGCT
TAAAATCTTTTAATTGATTCGATTTGTCGCGCCGGCGATTTGAACAAGAC
AGAATAAACTCGAGGAGCCTTGGGAGCCCACTTGGTGAATTTCAAGATGC
CCCCAAATTCACCGCGCATTTTAATCTATGACGTGAGTGCGTGTCTCCAC
TGTCATTATTTCTGCCGCTCCAGCAGTTCAAGCTGTGGTGAAATTTTGAT
ACCGAGCGCACTGGGTGGCAACGCAACGGACGAGCGTCGCTAACAGCGAT
CAAGTAAAAGGCAAGTCGAGTTGCCGTGTCACTACGATACTTCATATCAC
CGCGCCACACATGATTACTTTAGATGGCCGTGCCACAAACACCCGCACAC
TAACTACAGCACCCACACAGAATCCAAGAGGTTTAATCACCTACGACTGA
CCGTGCTGGCACGAACGAGAAAACAAAGCAAGCAACCATGACAAGCGCCG
CGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCTCACGCGGGCCTTC
CTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGGCTAGCACGAGCAA
GCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTGTGGAAGGGATGGG
CGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAGTAATCTCACCACC
ACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCTCTTCCACTTCATC
TTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCGGCTGTATTTCCCG
ACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCCGCAATCTCGCATT
AATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGATCGATTCACATCT
GGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAGGGAGGGAAGACGC
AGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGACGTGCTGGTGTCG
CTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAGACCAGCGTCGCCG
CCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGCCCCCCGTTCTCCT
TCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAGTCCCCTTGCCGTC
CTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCCCTTCCTCGCGCAC
TCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGGCGCCGCCTCCTCT
CCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGTGATTGCGTTTTGG
ACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGGCACGCGATGTGTT
GAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCCTTGTTGGTGCAGG
GAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGAGATGGCGGTGGAG
AGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGATGCCGACAGTCAC
CTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAGGACGACAATACCA
TGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTCCAGCCCACCTAGA
CGATGATTGAACAGGCAAGCATATCTTTACTCCCTTTTGTCTTCTCAACG
ACATTTAAAATCGCTTTTTTTAAGGAAGTTGTGAGTATAAGAGTAAGATA
TGGGGATATATTGCGTGGGTGAGTATAAGTGTACATTGTATATATAGAGG
AAGCGCCGTTCTAATTATTATGAAATGCGTTGATTACAGGGTCAGAGAAG
GGAGGCCTAAAGAGGTTCTGGGTTCGTCTTTGTGGTGTGTGAATATGTGC
ATTGTCCCAGCGTAATTAAGAGTGTGAAGAAACGTATATCTCCTCTTGTA
CGGGTGGTGGGGTTCCTTTCGTGAGCGACAGCGGGTTTCATCTAGATAAA
GAGGAGCCATACATAAAGGTACATGTATAAATATACATATACATATATAT
GTATGTGTGTGTATTGGTATACATATATGTATGTGTGTATATGTGTGTAG
ATATCTGGGTCTGGTTCTGGGTGTCTGTATGTCTGTATGTCTGGGTGTC
back to top

protein sequence of NO26G00840.1

>NO26G00840.1-protein ID=NO26G00840.1-protein|Name=NO26G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MTSAAAGFPHPVLPLELTRAFLQYLDVSTLLSLASTSKLGLALMDGESGL
WKGWADRRMLYFGAPESNLTTTTSSSAISIHSASSTSSLTTTEGGPHPFA
AVFPDGEGLDGIDFIGPQSRINVAAFNALRVKAIDSHLAPLLDKMGGKGE
GGKTQPCLISTYFQAFDVLVSLRADDAIDAILQDQRRRLFLATSSPSCPS
PPFSFSSLPPAPSTLLSPLAVLLALHLLYRSLPPSSRTLPSPYPSCGAWR
RRLLSFLAEGPFQGLAVIAFWTMGSHNPQNGFRARDVLKTEKLDLRRVAS
LLVQGGTKGGMEGGKEEMAVERALAKLESLRGMMPTVTLSPAVVYVGGVE
DDNTMCVNSQGFFALSSSPPRR*
back to top

mRNA from alignment at chr26:280023..282121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00840.1 ID=NO26G00840.1|Name=NO26G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp|location=Sequence derived from alignment at chr26:280023..282121- (Nannochloropsis oceanica)
ACAGCCAATTTACCATCGTGCAGAATATTCGGACACCTTTCTGGCCAGCT
TAAAATCTTTTAATTGATTCGATTTGTCGCGCCGGCGATTTGAACAAGAC
AGAATAAACTCGAGGAGCCTTGGGAGCCCACTTGGTGAATTTCAAGATGC
CCCCAAATTCACCGCGCATTTTAATCTATGACGTGAGTGCGTGTCTCCAC
TGTCATTATTTCTGCCGCTCCAGCAGTTCAAGCTGTGGTGAAATTTTGAT
ACCGAGCGCACTGGGTGGCAACGCAACGGACGAGCGTCGCTAACAGCGAT
CAAGTAAAAGGCAAGTCGAGTTGCCGTGTCACTACGATACTTCATATCAC
CGCGCCACACATGATTACTTTAGATGGCCGTGCCACAAACACCCGCACAC
TAACTACAGCACCCACACAGAATCCAAGAGGTTTAATCACCTACGACTGA
CCGTGCTGGCACGAACGAGAAAACAAAGCAAGCAACCATGACAAGCGCCG
CGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCTCACGCGGGCCTTC
CTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGGCTAGCACGAGCAA
GCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTGTGGAAGGGATGGG
CGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAGTAATCTCACCACC
ACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCTCTTCCACTTCATC
TTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCGGCTGTATTTCCCG
ACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCCGCAATCTCGCATT
AATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGATCGATTCACATCT
GGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAGGGAGGGAAGACGC
AGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGACGTGCTGGTGTCG
CTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAGACCAGCGTCGCCG
CCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGCCCCCCGTTCTCCT
TCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAGTCCCCTTGCCGTC
CTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCCCTTCCTCGCGCAC
TCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGGCGCCGCCTCCTCT
CCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGTGATTGCGTTTTGG
ACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGGCACGCGATGTGTT
GAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCCTTGTTGGTGCAGG
GAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGAGATGGCGGTGGAG
AGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGATGCCGACAGTCAC
CTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAGGACGACAATACCA
TGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTCCAGCCCACCTAGA
CGATGATTGAACAGGCAAGCATATCTTTACTCCCTTTTGTCTTCTCAACG
ACATTTAAAATCGCTTTTTTTAAGGAAGTTGTGAGTATAAGAGTAAGATA
TGGGGATATATTGCGTGGGTGAGTATAAGTGTACATTGTATATATAGAGG
AAGCGCCGTTCTAATTATTATGAAATGCGTTGATTACAGGGTCAGAGAAG
GGAGGCCTAAAGAGGTTCTGGGTTCGTCTTTGTGGTGTGTGAATATGTGC
ATTGTCCCAGCGTAATTAAGAGTGTGAAGAAACGTATATCTCCTCTTGTA
CGGGTGGTGGGGTTCCTTTCGTGAGCGACAGCGGGTTTCATCTAGATAAA
GAGGAGCCATACATAAAGGTACATGTATAAATATACATATACATATATAT
GTATGTGTGTGTATTGGTATACATATATGTATGTGTGTATATGTGTGTAG
ATATCTGGGTCTGGTTCTGGGTGTCTGTATGTCTGTATGTCTGGGTGTC
back to top

Coding sequence (CDS) from alignment at chr26:280023..282121-

>NO26G00840.1 ID=NO26G00840.1|Name=NO26G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr26:280023..282121- (Nannochloropsis oceanica)
ATGACAAGCGCCGCGGCAGGCTTCCCGCACCCCGTCCTTCCCTTGGAGCT
CACGCGGGCCTTCCTCCAATATCTGGACGTGTCAACACTCCTCTCCTTGG
CTAGCACGAGCAAGCTGGGCTTAGCCCTAATGGACGGAGAGAGTGGGTTG
TGGAAGGGATGGGCGGACCGGCGCATGCTTTACTTTGGAGCCCCTGAGAG
TAATCTCACCACCACCACCAGCAGCAGTGCTATCAGCATTCACTCTGCCT
CTTCCACTTCATCTTTGACTACCACAGAAGGAGGGCCCCATCCGTTCGCG
GCTGTATTTCCCGACGGGGAGGGGCTTGATGGGATTGATTTCATCGGCCC
GCAATCTCGCATTAATGTGGCGGCCTTCAACGCATTGCGGGTCAAGGCGA
TCGATTCACATCTGGCACCGCTTTTAGACAAAATGGGAGGGAAGGGGGAG
GGAGGGAAGACGCAGCCATGTTTGATCTCGACGTATTTTCAGGCATTTGA
CGTGCTGGTGTCGCTGCGCGCGGACGATGCCATTGATGCTATTCTGCAAG
ACCAGCGTCGCCGCCTCTTCCTCGCTACCTCGTCTCCCAGCTGTCCCAGC
CCCCCGTTCTCCTTCTCTTCGCTTCCTCCTGCGCCCTCTACACTTCTCAG
TCCCCTTGCCGTCCTCCTCGCACTCCACCTTCTCTACCGCTCCCTTCCCC
CTTCCTCGCGCACTCTTCCCTCCCCTTACCCCTCGTGCGGCGCGTGGCGG
CGCCGCCTCCTCTCCTTCCTGGCTGAAGGGCCTTTCCAGGGACTGGCGGT
GATTGCGTTTTGGACCATGGGTAGTCATAATCCCCAGAATGGGTTCAGGG
CACGCGATGTGTTGAAAACAGAGAAGTTGGATTTGAGACGCGTGGCTTCC
TTGTTGGTGCAGGGAGGGACAAAAGGAGGAATGGAGGGAGGGAAGGAGGA
GATGGCGGTGGAGAGGGCGTTGGCCAAGTTGGAGAGCTTAAGGGGAATGA
TGCCGACAGTCACCTTGTCGCCTGCTGTCGTGTATGTGGGGGGGGTGGAG
GACGACAATACCATGTGTGTGAATTCCCAGGGATTCTTTGCCTTGAGCTC
CAGCCCACCTAGACGATGA
back to top
Synonyms
Publications