NO26G00750, NO26G00750 (gene) Nannochloropsis oceanica

Overview
NameNO26G00750
Unique NameNO26G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length810
Alignment locationchr26:257221..258030 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:257221..258030 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO26G00750 vs. NCBI_GenBank
Match: EWM23114.1 (hypothetical protein Naga_100316g8 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 3.400e-44
Identity = 95/133 (71.43%), Postives = 101/133 (75.94%), Query Frame = 0 
Query:   94 FGLMEVLPQDALICVLGMLDAKDMTRLAATNSSVRARVTGQEATWPWLQACLQAWGLPVTTPYKSLCTPSSLP------TLYPSIVPWPQEIETAARKPLRRTPSTMSLEGARRTGVGFKVMSHHTVQYVGVG 221
            FGLME LPQDA++ VL ML+A+DM RL AT   +R RV G EATWPWLQ CLQAW L  TTPY +L T S LP       LYP IVPWP EIETA RKPLRRTPSTMSLEGARRTGVGFKVM HH VQYVG G
Sbjct:  238 FGLMEALPQDAVLHVLSMLEAEDMARLGATGKDLRTRVMGSEATWPWLQVCLQAWNLSTTTPYAALWTSSPLPPAAVLSRLYPLIVPWPAEIETATRKPLRRTPSTMSLEGARRTGVGFKVMGHHRVQYVGEG 370
The following BLAST results are available for this feature:
BLAST of NO26G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23114.13.400e-4471.43hypothetical protein Naga_100316g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00750.1NO26G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100316g8gene7339Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00750.1NO26G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00750 ID=NO26G00750|Name=NO26G00750|organism=Nannochloropsis oceanica|type=gene|length=810bp
ATGCAGTCGGCCGCGGCGGCAGAGGAGACATTCCTCTTTCTACATGGTGG
TACGGCGGGATGCAGTGGAGGAGGAGGAGGAGGAGGGGGAGGGGGGGGAA
GAGGGAGGGGAGGATGGCATCACCCATTGCACCCAGGCTCAAATGGTGGG
GGGGGCTACCGCCGTAGCCTTTATCCTTCCCTTTGGCTCGAGGAAGCAGA
TGATGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAGTGATGGAGCAGGAAG
GAGGGGGAGAGATGGTGAGGAGCGTTTTTTTTGGGTTGATGGAGGTATTG
CCCCAAGACGCATTGATTTGTGTGTTGGGCATGCTTGACGCCAAGGATAT
GACACGCTTGGCGGCTACCAATTCAAGCGTACGGGCGCGGGTAACAGGCC
AAGAGGCGACCTGGCCGTGGTTGCAAGCGTGCTTACAGgtaaggaaggag
ggggggtagaagggaaggttgttttctgctttttgctgtctttctcccca
ctcactcattccctcgctggctccttttcgccctccctcctcctcatagG
CATGGGGCCTTCCTGTTACTACTCCTTACAAGAGCCTCTGCACCCCTTCC
TCCCTCCCTACCTTGTACCCGTCCATCGTCCCGTGGCCCCAGGAGATCGA
GACTGCGGCCCGCAAGCCTCTACGAAGAACGCCGAGTACGATGAGTTTAG
AAGGTGCACGCAGGACAGGCGTGGGATTCAAGGTCATGTCCCATCATACT
GTCCAATATGTGGGGGTGGGCGGGGGCGGGGGGGAGGGGGGGGGGGCAAC
CGGGCAGTGA
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protein sequence of NO26G00750.1

>NO26G00750.1-protein ID=NO26G00750.1-protein|Name=NO26G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MQSAAAAEETFLFLHGGTAGCSGGGGGGGGGGGRGRGGWHHPLHPGSNGG
GGYRRSLYPSLWLEEADDEEEEEEEEEGVMEQEGGGEMVRSVFFGLMEVL
PQDALICVLGMLDAKDMTRLAATNSSVRARVTGQEATWPWLQACLQAWGL
PVTTPYKSLCTPSSLPTLYPSIVPWPQEIETAARKPLRRTPSTMSLEGAR
RTGVGFKVMSHHTVQYVGVGGGGGEGGGATGQ*
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Synonyms
Publications