NO26G00750.1, NO26G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00750.1
Unique NameNO26G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr26:257221..258030 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:257221..258030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00750.1 vs.
Match: EWM23114.1 (hypothetical protein Naga_100316g8 [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 4.600e-49
Identity = 129/230 (56.09%), Postives = 146/230 (63.48%), Query Frame = 0 
Query:    7 AEETFLFLHGGTAGCSGGGGGGGGGGGRGRGGWHHPLHPGSNGGGGYRRSLYPSLWLEEADDEEEEEE------EEEGVMEQEGGGEMVRSVFFGLMEVLPQDALICVLGMLDAKDMTRLAATNSSVRARVTGQEATWPWLQACLQAWGLPVTTPYKSLCTPSSLP------TLYPSIVPWPQEIETAARKPLRRTPSTMSLEGARRTGVGFKVMSHHTVQYVGVGGGGG 225
            AEE  +  H G+AG      G       G GGW    +P +  G  YRRSL+PSLWLEE ++E+E E+      E   V ++ G         FGLME LPQDA++ VL ML+A+DM RL AT   +R RV G EATWPWLQ CLQAW L  TTPY +L T S LP       LYP IVPWP EIETA RKPLRRTPSTMSLEGARRTGVGFKVM HH VQYVG G G G
Sbjct:  152 AEEALVLFHRGSAG------GRKDHHDDGDGGWRSLANPTTRDGV-YRRSLFPSLWLEEEEEEQEVEQRDTCDKEMTHVEDKVGSESDGEGSSFGLMEALPQDAVLHVLSMLEAEDMARLGATGKDLRTRVMGSEATWPWLQVCLQAWNLSTTTPYAALWTSSPLPPAAVLSRLYPLIVPWPAEIETATRKPLRRTPSTMSLEGARRTGVGFKVMGHHRVQYVGEGLGAG 374
The following BLAST results are available for this feature:
BLAST of NO26G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23114.14.600e-4956.09hypothetical protein Naga_100316g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00750NO26G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00750.1NO26G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00750.1.cds1NO26G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00750.1.cds2NO26G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00750.1 ID=NO26G00750.1|Name=NO26G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGCAGTCGGCCGCGGCGGCAGAGGAGACATTCCTCTTTCTACATGGTGG
TACGGCGGGATGCAGTGGAGGAGGAGGAGGAGGAGGGGGAGGGGGGGGAA
GAGGGAGGGGAGGATGGCATCACCCATTGCACCCAGGCTCAAATGGTGGG
GGGGGCTACCGCCGTAGCCTTTATCCTTCCCTTTGGCTCGAGGAAGCAGA
TGATGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAGTGATGGAGCAGGAAG
GAGGGGGAGAGATGGTGAGGAGCGTTTTTTTTGGGTTGATGGAGGTATTG
CCCCAAGACGCATTGATTTGTGTGTTGGGCATGCTTGACGCCAAGGATAT
GACACGCTTGGCGGCTACCAATTCAAGCGTACGGGCGCGGGTAACAGGCC
AAGAGGCGACCTGGCCGTGGTTGCAAGCGTGCTTACAGGCATGGGGCCTT
CCTGTTACTACTCCTTACAAGAGCCTCTGCACCCCTTCCTCCCTCCCTAC
CTTGTACCCGTCCATCGTCCCGTGGCCCCAGGAGATCGAGACTGCGGCCC
GCAAGCCTCTACGAAGAACGCCGAGTACGATGAGTTTAGAAGGTGCACGC
AGGACAGGCGTGGGATTCAAGGTCATGTCCCATCATACTGTCCAATATGT
GGGGGTGGGCGGGGGCGGGGGGGAGGGGGGGGGGGCAACCGGGCAGTGA
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protein sequence of NO26G00750.1

>NO26G00750.1-protein ID=NO26G00750.1-protein|Name=NO26G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MQSAAAAEETFLFLHGGTAGCSGGGGGGGGGGGRGRGGWHHPLHPGSNGG
GGYRRSLYPSLWLEEADDEEEEEEEEEGVMEQEGGGEMVRSVFFGLMEVL
PQDALICVLGMLDAKDMTRLAATNSSVRARVTGQEATWPWLQACLQAWGL
PVTTPYKSLCTPSSLPTLYPSIVPWPQEIETAARKPLRRTPSTMSLEGAR
RTGVGFKVMSHHTVQYVGVGGGGGEGGGATGQ*
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mRNA from alignment at chr26:257221..258030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00750.1 ID=NO26G00750.1|Name=NO26G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=810bp|location=Sequence derived from alignment at chr26:257221..258030- (Nannochloropsis oceanica)
ATGCAGTCGGCCGCGGCGGCAGAGGAGACATTCCTCTTTCTACATGGTGG
TACGGCGGGATGCAGTGGAGGAGGAGGAGGAGGAGGGGGAGGGGGGGGAA
GAGGGAGGGGAGGATGGCATCACCCATTGCACCCAGGCTCAAATGGTGGG
GGGGGCTACCGCCGTAGCCTTTATCCTTCCCTTTGGCTCGAGGAAGCAGA
TGATGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAGTGATGGAGCAGGAAG
GAGGGGGAGAGATGGTGAGGAGCGTTTTTTTTGGGTTGATGGAGGTATTG
CCCCAAGACGCATTGATTTGTGTGTTGGGCATGCTTGACGCCAAGGATAT
GACACGCTTGGCGGCTACCAATTCAAGCGTACGGGCGCGGGTAACAGGCC
AAGAGGCGACCTGGCCGTGGTTGCAAGCGTGCTTACAGGTAAGGAAGGAG
GGGGGGTAGAAGGGAAGGTTGTTTTCTGCTTTTTGCTGTCTTTCTCCCCA
CTCACTCATTCCCTCGCTGGCTCCTTTTCGCCCTCCCTCCTCCTCATAGG
CATGGGGCCTTCCTGTTACTACTCCTTACAAGAGCCTCTGCACCCCTTCC
TCCCTCCCTACCTTGTACCCGTCCATCGTCCCGTGGCCCCAGGAGATCGA
GACTGCGGCCCGCAAGCCTCTACGAAGAACGCCGAGTACGATGAGTTTAG
AAGGTGCACGCAGGACAGGCGTGGGATTCAAGGTCATGTCCCATCATACT
GTCCAATATGTGGGGGTGGGCGGGGGCGGGGGGGAGGGGGGGGGGGCAAC
CGGGCAGTGA
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Coding sequence (CDS) from alignment at chr26:257221..258030-

>NO26G00750.1 ID=NO26G00750.1|Name=NO26G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr26:257221..258030- (Nannochloropsis oceanica)
ATGCAGTCGGCCGCGGCGGCAGAGGAGACATTCCTCTTTCTACATGGTGG
TACGGCGGGATGCAGTGGAGGAGGAGGAGGAGGAGGGGGAGGGGGGGGAA
GAGGGAGGGGAGGATGGCATCACCCATTGCACCCAGGCTCAAATGGTGGG
GGGGGCTACCGCCGTAGCCTTTATCCTTCCCTTTGGCTCGAGGAAGCAGA
TGATGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAGTGATGGAGCAGGAAG
GAGGGGGAGAGATGGTGAGGAGCGTTTTTTTTGGGTTGATGGAGGTATTG
CCCCAAGACGCATTGATTTGTGTGTTGGGCATGCTTGACGCCAAGGATAT
GACACGCTTGGCGGCTACCAATTCAAGCGTACGGGCGCGGGTAACAGGCC
AAGAGGCGACCTGGCCGTGGTTGCAAGCGTGCTTACAGGCATGGGGCCTT
CCTGTTACTACTCCTTACAAGAGCCTCTGCACCCCTTCCTCCCTCCCTAC
CTTGTACCCGTCCATCGTCCCGTGGCCCCAGGAGATCGAGACTGCGGCCC
GCAAGCCTCTACGAAGAACGCCGAGTACGATGAGTTTAGAAGGTGCACGC
AGGACAGGCGTGGGATTCAAGGTCATGTCCCATCATACTGTCCAATATGT
GGGGGTGGGCGGGGGCGGGGGGGAGGGGGGGGGGGCAACCGGGCAGTGA
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Synonyms
Publications