NO26G00690, NO26G00690 (gene) Nannochloropsis oceanica

Overview
NameNO26G00690
Unique NameNO26G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length288
Alignment locationchr26:242624..242911 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:242624..242911 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001650Helicase_C
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
Homology
[Close]
BLAST of NO26G00690 vs. NCBI_GenBank
Match: CEL97128.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.6 bits (161), Expect = 4.700e-8
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:    4 PLLVTSVETARGLDFAGECDCVLILGRAKSADEYQHVAGRTGRRGRDGGREVMEGEGGSAVSVISYVDIKKLTGYESMLGI 85
            PLLV S++ ARGL F  + D V +LGR ++ DEYQH+AGRTGR          +G GG+AV +    +++ L  +  MLGI
Sbjct:  380 PLLVASMDGARGLHF-NQVDMVFVLGRPRTPDEYQHLAGRTGR----------QGAGGTAVIIGDSFEVRSLLAWRKMLGI 449
[Close]
BLAST of NO26G00690 vs. NCBI_GenBank
Match: PHJ19175.1 (dead deah box helicase domain-containing protein, partial [Cystoisospora suis])

HSP 1 Score: 64.3 bits (155), Expect = 2.300e-7
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 0 
Query:    5 LLVTSVETARGLDFAGECDCVLILGRAKSADEYQHVAGRTGRRGRDGGREVMEGEGGSAVSVISYVDIKKLTGYESMLGIKFTRENGLI 94
            LLVTS++TARGL F  + D V ++GR +SADEYQH+AGRTGR G+           G A+ V      + L  +E ML I F     L+
Sbjct:  794 LLVTSMDTARGLHF-DDIDVVFLVGRVESADEYQHLAGRTGRGGKP----------GIAICVSDADTQRLLRSWEKMLDISFRPTTDLL 871
The following BLAST results are available for this feature:
BLAST of NO26G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
CEL97128.14.700e-844.44unnamed protein product [Vitrella brassicaformis C... [more]
PHJ19175.12.300e-743.82dead deah box helicase domain-containing protein, ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00690.1NO26G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00690.1NO26G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00690 ID=NO26G00690|Name=NO26G00690|organism=Nannochloropsis oceanica|type=gene|length=288bp
ATGTCGTTCCCGTTATTGGTGACGAGTGTCGAGACTGCTCGCGGGTTGGA
TTTTGCAGGGGAGTGTGACTGTGTCTTAATTTTGGGCAGAGCCAAATCAG
CGGATGAGTACCAGCATGTCGCCGGAAGGACGGGAAGGAGGGGGAGGGAT
GGAGGGAGGGAGGTGATGGAGGGGGAGGGAGGGTCTGCCGTGTCGGTCAT
ATCGTACGTGGATATCAAGAAATTGACGGGGTATGAGAGTATGTTGGGGA
TTAAATTCACGCGGGAGAATGGGTTGATTTTTGGTTAG
back to top

protein sequence of NO26G00690.1

>NO26G00690.1-protein ID=NO26G00690.1-protein|Name=NO26G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSFPLLVTSVETARGLDFAGECDCVLILGRAKSADEYQHVAGRTGRRGRD
GGREVMEGEGGSAVSVISYVDIKKLTGYESMLGIKFTRENGLIFG*
back to top
Synonyms
Publications