NO26G00690.1, NO26G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00690.1
Unique NameNO26G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length288
Alignment locationchr26:242624..242911 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:242624..242911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00690.1 vs.
Match: CEL97128.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.6 bits (161), Expect = 4.700e-8
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 0 
Query:    4 PLLVTSVETARGLDFAGECDCVLILGRAKSADEYQHVAGRTGRRGRDGGREVMEGEGGSAVSVISYVDIKKLTGYESMLGI 85
            PLLV S++ ARGL F  + D V +LGR ++ DEYQH+AGRTGR          +G GG+AV +    +++ L  +  MLGI
Sbjct:  380 PLLVASMDGARGLHF-NQVDMVFVLGRPRTPDEYQHLAGRTGR----------QGAGGTAVIIGDSFEVRSLLAWRKMLGI 449
The following BLAST results are available for this feature:
BLAST of NO26G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEL97128.14.700e-844.44unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00690NO26G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00690.1NO26G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00690.1.cds1NO26G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00690.1 ID=NO26G00690.1|Name=NO26G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=288bp
ATGTCGTTCCCGTTATTGGTGACGAGTGTCGAGACTGCTCGCGGGTTGGA
TTTTGCAGGGGAGTGTGACTGTGTCTTAATTTTGGGCAGAGCCAAATCAG
CGGATGAGTACCAGCATGTCGCCGGAAGGACGGGAAGGAGGGGGAGGGAT
GGAGGGAGGGAGGTGATGGAGGGGGAGGGAGGGTCTGCCGTGTCGGTCAT
ATCGTACGTGGATATCAAGAAATTGACGGGGTATGAGAGTATGTTGGGGA
TTAAATTCACGCGGGAGAATGGGTTGATTTTTGGTTAG
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protein sequence of NO26G00690.1

>NO26G00690.1-protein ID=NO26G00690.1-protein|Name=NO26G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MSFPLLVTSVETARGLDFAGECDCVLILGRAKSADEYQHVAGRTGRRGRD
GGREVMEGEGGSAVSVISYVDIKKLTGYESMLGIKFTRENGLIFG*
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mRNA from alignment at chr26:242624..242911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00690.1 ID=NO26G00690.1|Name=NO26G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=288bp|location=Sequence derived from alignment at chr26:242624..242911+ (Nannochloropsis oceanica)
ATGTCGTTCCCGTTATTGGTGACGAGTGTCGAGACTGCTCGCGGGTTGGA
TTTTGCAGGGGAGTGTGACTGTGTCTTAATTTTGGGCAGAGCCAAATCAG
CGGATGAGTACCAGCATGTCGCCGGAAGGACGGGAAGGAGGGGGAGGGAT
GGAGGGAGGGAGGTGATGGAGGGGGAGGGAGGGTCTGCCGTGTCGGTCAT
ATCGTACGTGGATATCAAGAAATTGACGGGGTATGAGAGTATGTTGGGGA
TTAAATTCACGCGGGAGAATGGGTTGATTTTTGGTTAG
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Coding sequence (CDS) from alignment at chr26:242624..242911+

>NO26G00690.1 ID=NO26G00690.1|Name=NO26G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at chr26:242624..242911+ (Nannochloropsis oceanica)
ATGTCGTTCCCGTTATTGGTGACGAGTGTCGAGACTGCTCGCGGGTTGGA
TTTTGCAGGGGAGTGTGACTGTGTCTTAATTTTGGGCAGAGCCAAATCAG
CGGATGAGTACCAGCATGTCGCCGGAAGGACGGGAAGGAGGGGGAGGGAT
GGAGGGAGGGAGGTGATGGAGGGGGAGGGAGGGTCTGCCGTGTCGGTCAT
ATCGTACGTGGATATCAAGAAATTGACGGGGTATGAGAGTATGTTGGGGA
TTAAATTCACGCGGGAGAATGGGTTGATTTTTGGTTAG
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Synonyms
Publications