NO26G00640, NO26G00640 (gene) Nannochloropsis oceanica

Overview
NameNO26G00640
Unique NameNO26G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1692
Alignment locationchr26:223322..225013 -

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Properties
Property NameValue
DescriptionTranscription elongation factor B, polypeptide 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:223322..225013 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011333BTB/POZ_fold
IPR016073Skp1_comp_POZ
IPR001232SKP1-like
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Homology
BLAST of NO26G00640 vs. NCBI_GenBank
Match: XP_005855940.1 (transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526] >EKU20413.1 transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.5 bits (467), Expect = 1.600e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            ME++ SKY+KLISAEGHEFIVDRKCACVSKTIEAMLAG FAESKGEI FPEISTNILEKVIQYLYYKVRYTNS  KVPDFK+EPE+ALELLMAANFLDC
Sbjct:    1 MEDDASKYVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAESKGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: XP_008618991.1 (transcription elongation factor B, polypeptide 1 [Saprolegnia diclina VS20] >XP_012205861.1 hypothetical protein SPRG_11463 [Saprolegnia parasitica CBS 223.65] >EQC27571.1 transcription elongation factor B, polypeptide 1 [Saprolegnia diclina VS20] >KDO23371.1 hypothetical protein SPRG_11463 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 153.3 bits (386), Expect = 4.000e-34
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = 0
Query:    5 PSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            PS+Y+KLISAEGHEF V RKCA VS TI+AML+G F+ESKGE++FP+I   ILEKVIQY+YYK RY+NSN+++PDF +EPEMALELLMAAN+LDC
Sbjct:    9 PSEYVKLISAEGHEFYVARKCALVSGTIKAMLSGHFSESKGEVRFPDIGAPILEKVIQYMYYKKRYSNSNARIPDFAIEPEMALELLMAANYLDC 103          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: OQR94293.1 (transcription elongation factor B polypeptide 1 [Achlya hypogyna])

HSP 1 Score: 151.8 bits (382), Expect = 1.200e-33
Identity = 70/94 (74.47%), Postives = 85/94 (90.43%), Query Frame = 0
Query:    6 SKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            S+Y+KLISAEGHEF V RKCA VS TI+AML+G F+ESKGE++FP+IS  ILEKVIQY+YYK RY+NSN+++PDF +EPEMALELLMAAN+LDC
Sbjct:    8 SEYVKLISAEGHEFFVARKCALVSGTIKAMLSGHFSESKGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: OQS06752.1 (transcription elongation factor B polypeptide 1 [Thraustotheca clavata])

HSP 1 Score: 149.1 bits (375), Expect = 7.500e-33
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 0
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            M +  S+Y+KL+SAEGHEF V RKCA VS TI+AML G F+ESKGEI+FP+IS  ILEKVIQYLYYK RY+NSN+++P+F +EPEM+LELLMAAN+L+C
Sbjct:    7 MADTESEYVKLVSAEGHEFYVARKCALVSGTIKAMLLGQFSESKGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: XP_009837007.1 (hypothetical protein H257_11701 [Aphanomyces astaci] >ETV73581.1 hypothetical protein H257_11701 [Aphanomyces astaci])

HSP 1 Score: 144.1 bits (362), Expect = 2.400e-31
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    7 KYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +YIKLISAEGHEF + RKCA VS TI+AML G F ESKGEI+F +I  +ILEKVIQY+YYK RY+NSN+++PDF +EPE+ALELLMAAN+LDC
Sbjct:   13 EYIKLISAEGHEFYIARKCAMVSGTIKAMLTGHFIESKGEIRFQDIGASILEKVIQYMYYKKRYSNSNARIPDFVIEPEIALELLMAANYLDC 105          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: XP_008872221.1 (hypothetical protein H310_08303 [Aphanomyces invadans] >ETV98793.1 hypothetical protein H310_08303 [Aphanomyces invadans])

HSP 1 Score: 142.5 bits (358), Expect = 7.000e-31
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    7 KYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +Y+KLISAEGHEF + RKCA VS TI+AML G F ESKGEI+F +IS  ILEKVIQY+YYK R++NSN+++PDF +EPE+ALELLMAAN+LDC
Sbjct:   13 EYVKLISAEGHEFYIARKCAMVSGTIKAMLTGHFIESKGEIRFQDISAPILEKVIQYMYYKKRFSNSNARIPDFVIEPEIALELLMAANYLDC 105          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: CBJ30221.1 (RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Ectocarpus siliculosus])

HSP 1 Score: 139.0 bits (349), Expect = 7.800e-30
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAE-SKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            M  E  +++KL+SAEG EF VDRKCA VS TI+AML+GGF E + G++ F EIST ILEKVIQ++YYKVRYTNS +++P+F +EPE+ALELLMAANFLDC
Sbjct:    1 MATEDQEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: GBG31385.1 (Elongin-C [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 135.6 bits (340), Expect = 8.600e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    8 YIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            Y+KLISAEGHEF +D++ A ++ TI AML G F+ESKGEI+FPEIST +LEKV+QYL+YK +YTNS+  +P+F ++PEM  +LLMAANFL+C
Sbjct:   28 YVKLISAEGHEFFLDKEVAMIATTISAMLTGNFSESKGEIRFPEISTKVLEKVVQYLHYKQKYTNSSQPIPEFDIDPEMVADLLMAANFLNC 119          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: XP_009038876.1 (hypothetical protein AURANDRAFT_29207, partial [Aureococcus anophagefferens] >EGB06296.1 hypothetical protein AURANDRAFT_29207, partial [Aureococcus anophagefferens])

HSP 1 Score: 133.7 bits (335), Expect = 3.300e-28
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0
Query:   13 SAEGHEFIVDRKCACVSKTIEAMLAG-----GFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            SAEGHEF VDRKCA  S TI+AML+G      F ES GEIKFPEIST ILEKVIQY YYK+RYTNS  ++P+F+++PEMALELLMA+NFLDC
Sbjct:    1 SAEGHEFWVDRKCANTSGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92          
BLAST of NO26G00640 vs. NCBI_GenBank
Match: OWZ08931.1 (Transcription elongation factor B polypeptide 1 [Phytophthora megakarya])

HSP 1 Score: 133.3 bits (334), Expect = 4.300e-28
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 0
Query:    9 IKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +KLISAEGHE  + RKCA VS TI AML+G F ESKGEI FP+IS  ILEKV QY+YYK +Y++S S++P+F +EPE+A+ELLMAAN+LDC
Sbjct:   15 VKLISAEGHEIYISRKCAMVSGTIRAMLSGQFTESKGEITFPDISAPILEKVSQYMYYKTQYSDSTSRLPEFNIEPEIAMELLMAANYLDC 105          
The following BLAST results are available for this feature:
BLAST of NO26G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855940.11.600e-4389.90transcription elongation factor B, polypeptide 1 [... [more]
XP_008618991.14.000e-3473.68transcription elongation factor B, polypeptide 1 [... [more]
OQR94293.11.200e-3374.47transcription elongation factor B polypeptide 1 [A... [more]
OQS06752.17.500e-3369.70transcription elongation factor B polypeptide 1 [T... [more]
XP_009837007.12.400e-3172.04hypothetical protein H257_11701 [Aphanomyces astac... [more]
XP_008872221.17.000e-3170.97hypothetical protein H310_08303 [Aphanomyces invad... [more]
CBJ30221.17.800e-3067.00RNA polymerase II transcription elongation factor ... [more]
GBG31385.18.600e-2964.13Elongin-C [Aurantiochytrium sp. FCC1311][more]
XP_009038876.13.300e-2871.74hypothetical protein AURANDRAFT_29207, partial [Au... [more]
OWZ08931.14.300e-2867.03Transcription elongation factor B polypeptide 1 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00640.1NO26G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00640.1NO26G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00640 ID=NO26G00640|Name=NO26G00640|organism=Nannochloropsis oceanica|type=gene|length=1692bp
ACAGGAAAGTTGAAGTGCTCGCAAAGGGCGGATAGAAGGCAAGGCAAAGC
AAAGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAACAGAAGCAATAGAC
ACACGTAAAGCAAAGCACAATGGAAGAAGAGCCCTCCAAGTACATCAAAC
TCATCAGgtacgtcttgagccccgtagtactggtgatgatcgatgacagc
cactcggcaccggtggcggtaccggcgaagctcttggcacagcgaaataa
aaaggagaaatggacgactgctctcccctagccctacacccatcctccct
ctccttgcttcttaatcttgtcccacatacgacacttcgtccgtgttgtc
tggcttccaactaccctcccatgatctctgtggatttgtgcaattttcta
tttctagtcctcgctgttaatgtacttctctgcctttccccctccgtccc
tcccctttctccctcagTGCGGAGGGCCACGAGTTCATCGTCGACCGCAA
ATGCGCCTGTGTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCTTCG
CAGAAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTCCACCAATATTTTA
GAGAAGGTCATACAGTACCTCTACTACAAGgtttgtatgtgtttatcttc
cccccccccctcctctctcctttcggtgtaagcttgtcgagcttgtcgaa
cccatcgaatgtatcgatccgattaccatgtctttccattttactgtgct
cacattgccacctcacttacccattcaccactccttccctccctcgtttt
ctccttccttccctcagGTCCGCTACACGAACTCCAATTCTAAAGTCCCT
GACTTCAAGTTGGAGCCTGAAATGGCCTTGGAGCTGTTGATGGCGGCTAA
CTTCTTAGACTGCTAGGGAGGGAGGGAGGGAAGGAGGGTGCCAGCGCGTG
TAATAAGGGGCTTCGAGAGTCTGGACAAGGGACACGGAAAAGACCAGAAG
AAAAGAGTGTATAAAAATGCAGCATTGGGGGCAGCAGCCATCCCCCCAAA
CTAAGAAATCAATCATCTTCATGCACCCATCAAAATCCCCGGCCTAAATA
GATTGGATCCTGAAGATGACTGTGGGTGAACATGGCCATGACGTATGTGA
TGGGAAGTGCAAGAGCAATGGCTAGTGATACCAAAGACAGGAATTGTTTG
CCTCGGTGACTCGCTCCCCTTGTGTTTTCCCATTAAATAGGTGCTTTAAC
TTTAATGTTCTGATTTTCCCCCTCTTCCATCGTTCCTCTTAGCCCGATGC
CCATCGCGTGCGCCGAGGCGCAGAAAGCGTACATTCAGTCATTATTTACA
TGCATCGACGCTTGATCGTCTCCGAGAGAGGAAAGTCTGCTGTCATACAG
ACATGACTTCCTGTCGTTCTCCCTCTAATCCTCCCCCCTTTCCTTTCTCC
TTCTGTGCTTCTGCCGCCAACTTAAACGCCTCTCCCTCCCTCCCGCCCTC
ATCCTCCGCTTGCTGGGCCTCCATCACCATCTTCTTCAACTCCTCCACGA
TACTCAAATATTCCGTGGAATAAATTTCTACCACCTCCCTCGCCCCCTCC
CTCGCTCCCTCCCTCCCTCCTTGCCCTTGACTTGACATCCCTATCGTCGA
CGACAAGGACTGCGACAATCCCCTCGGTCGCTCCCTCCCTCC
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protein sequence of NO26G00640.1

>NO26G00640.1-protein ID=NO26G00640.1-protein|Name=NO26G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFP
EISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC*
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Synonyms
Publications