NO26G00640.1, NO26G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00640.1
Unique NameNO26G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1195
Alignment locationchr26:223322..225013 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:223322..225013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00640.1 vs.
Match: XP_005855940.1 (transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526]; EKU20413.1 transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.5 bits (467), Expect = 1.600e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 0 
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            ME++ SKY+KLISAEGHEFIVDRKCACVSKTIEAMLAG FAESKGEI FPEISTNILEKVIQYLYYKVRYTNS  KVPDFK+EPE+ALELLMAANFLDC
Sbjct:    1 MEDDASKYVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAESKGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99
The following BLAST results are available for this feature:
BLAST of NO26G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855940.11.600e-4389.90transcription elongation factor B, polypeptide 1 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00640NO26G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00640.1NO26G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00640.1.cds1NO26G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00640.1.cds2NO26G00640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00640.1.cds3NO26G00640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00640.1 ID=NO26G00640.1|Name=NO26G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
ACAGGAAAGTTGAAGTGCTCGCAAAGGGCGGATAGAAGGCAAGGCAAAGC
AAAGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAACAGAAGCAATAGAC
ACACGTAAAGCAAAGCACAATGGAAGAAGAGCCCTCCAAGTACATCAAAC
TCATCAGTGCGGAGGGCCACGAGTTCATCGTCGACCGCAAATGCGCCTGT
GTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCTTCGCAGAAAGCAA
AGGGGAAATCAAGTTTCCTGAGATCTCCACCAATATTTTAGAGAAGGTCA
TACAGTACCTCTACTACAAGGTCCGCTACACGAACTCCAATTCTAAAGTC
CCTGACTTCAAGTTGGAGCCTGAAATGGCCTTGGAGCTGTTGATGGCGGC
TAACTTCTTAGACTGCTAGGGAGGGAGGGAGGGAAGGAGGGTGCCAGCGC
GTGTAATAAGGGGCTTCGAGAGTCTGGACAAGGGACACGGAAAAGACCAG
AAGAAAAGAGTGTATAAAAATGCAGCATTGGGGGCAGCAGCCATCCCCCC
AAACTAAGAAATCAATCATCTTCATGCACCCATCAAAATCCCCGGCCTAA
ATAGATTGGATCCTGAAGATGACTGTGGGTGAACATGGCCATGACGTATG
TGATGGGAAGTGCAAGAGCAATGGCTAGTGATACCAAAGACAGGAATTGT
TTGCCTCGGTGACTCGCTCCCCTTGTGTTTTCCCATTAAATAGGTGCTTT
AACTTTAATGTTCTGATTTTCCCCCTCTTCCATCGTTCCTCTTAGCCCGA
TGCCCATCGCGTGCGCCGAGGCGCAGAAAGCGTACATTCAGTCATTATTT
ACATGCATCGACGCTTGATCGTCTCCGAGAGAGGAAAGTCTGCTGTCATA
CAGACATGACTTCCTGTCGTTCTCCCTCTAATCCTCCCCCCTTTCCTTTC
TCCTTCTGTGCTTCTGCCGCCAACTTAAACGCCTCTCCCTCCCTCCCGCC
CTCATCCTCCGCTTGCTGGGCCTCCATCACCATCTTCTTCAACTCCTCCA
CGATACTCAAATATTCCGTGGAATAAATTTCTACCACCTCCCTCGCCCCC
TCCCTCGCTCCCTCCCTCCCTCCTTGCCCTTGACTTGACATCCCTATCGT
CGACGACAAGGACTGCGACAATCCCCTCGGTCGCTCCCTCCCTCC
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protein sequence of NO26G00640.1

>NO26G00640.1-protein ID=NO26G00640.1-protein|Name=NO26G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFAESKGEIKFP
EISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC*
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mRNA from alignment at chr26:223322..225013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00640.1 ID=NO26G00640.1|Name=NO26G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at chr26:223322..225013- (Nannochloropsis oceanica)
ACAGGAAAGTTGAAGTGCTCGCAAAGGGCGGATAGAAGGCAAGGCAAAGC
AAAGGGGCCCGGACTTGAGGCAGCAACAGCAGGGAACAGAAGCAATAGAC
ACACGTAAAGCAAAGCACAATGGAAGAAGAGCCCTCCAAGTACATCAAAC
TCATCAGGTACGTCTTGAGCCCCGTAGTACTGGTGATGATCGATGACAGC
CACTCGGCACCGGTGGCGGTACCGGCGAAGCTCTTGGCACAGCGAAATAA
AAAGGAGAAATGGACGACTGCTCTCCCCTAGCCCTACACCCATCCTCCCT
CTCCTTGCTTCTTAATCTTGTCCCACATACGACACTTCGTCCGTGTTGTC
TGGCTTCCAACTACCCTCCCATGATCTCTGTGGATTTGTGCAATTTTCTA
TTTCTAGTCCTCGCTGTTAATGTACTTCTCTGCCTTTCCCCCTCCGTCCC
TCCCCTTTCTCCCTCAGTGCGGAGGGCCACGAGTTCATCGTCGACCGCAA
ATGCGCCTGTGTCAGTAAAACCATCGAGGCCATGCTTGCAGGTGGCTTCG
CAGAAAGCAAAGGGGAAATCAAGTTTCCTGAGATCTCCACCAATATTTTA
GAGAAGGTCATACAGTACCTCTACTACAAGGTTTGTATGTGTTTATCTTC
CCCCCCCCCCTCCTCTCTCCTTTCGGTGTAAGCTTGTCGAGCTTGTCGAA
CCCATCGAATGTATCGATCCGATTACCATGTCTTTCCATTTTACTGTGCT
CACATTGCCACCTCACTTACCCATTCACCACTCCTTCCCTCCCTCGTTTT
CTCCTTCCTTCCCTCAGGTCCGCTACACGAACTCCAATTCTAAAGTCCCT
GACTTCAAGTTGGAGCCTGAAATGGCCTTGGAGCTGTTGATGGCGGCTAA
CTTCTTAGACTGCTAGGGAGGGAGGGAGGGAAGGAGGGTGCCAGCGCGTG
TAATAAGGGGCTTCGAGAGTCTGGACAAGGGACACGGAAAAGACCAGAAG
AAAAGAGTGTATAAAAATGCAGCATTGGGGGCAGCAGCCATCCCCCCAAA
CTAAGAAATCAATCATCTTCATGCACCCATCAAAATCCCCGGCCTAAATA
GATTGGATCCTGAAGATGACTGTGGGTGAACATGGCCATGACGTATGTGA
TGGGAAGTGCAAGAGCAATGGCTAGTGATACCAAAGACAGGAATTGTTTG
CCTCGGTGACTCGCTCCCCTTGTGTTTTCCCATTAAATAGGTGCTTTAAC
TTTAATGTTCTGATTTTCCCCCTCTTCCATCGTTCCTCTTAGCCCGATGC
CCATCGCGTGCGCCGAGGCGCAGAAAGCGTACATTCAGTCATTATTTACA
TGCATCGACGCTTGATCGTCTCCGAGAGAGGAAAGTCTGCTGTCATACAG
ACATGACTTCCTGTCGTTCTCCCTCTAATCCTCCCCCCTTTCCTTTCTCC
TTCTGTGCTTCTGCCGCCAACTTAAACGCCTCTCCCTCCCTCCCGCCCTC
ATCCTCCGCTTGCTGGGCCTCCATCACCATCTTCTTCAACTCCTCCACGA
TACTCAAATATTCCGTGGAATAAATTTCTACCACCTCCCTCGCCCCCTCC
CTCGCTCCCTCCCTCCCTCCTTGCCCTTGACTTGACATCCCTATCGTCGA
CGACAAGGACTGCGACAATCCCCTCGGTCGCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at chr26:223322..225013-

>NO26G00640.1 ID=NO26G00640.1|Name=NO26G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at chr26:223322..225013- (Nannochloropsis oceanica)
ATGGAAGAAGAGCCCTCCAAGTACATCAAACTCATCAGTGCGGAGGGCCA
CGAGTTCATCGTCGACCGCAAATGCGCCTGTGTCAGTAAAACCATCGAGG
CCATGCTTGCAGGTGGCTTCGCAGAAAGCAAAGGGGAAATCAAGTTTCCT
GAGATCTCCACCAATATTTTAGAGAAGGTCATACAGTACCTCTACTACAA
GGTCCGCTACACGAACTCCAATTCTAAAGTCCCTGACTTCAAGTTGGAGC
CTGAAATGGCCTTGGAGCTGTTGATGGCGGCTAACTTCTTAGACTGCTAG
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Synonyms
Publications