NO26G00420, NO26G00420 (gene) Nannochloropsis oceanica

Overview
NameNO26G00420
Unique NameNO26G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr26:134583..135779 +

Link to JBrowse

Properties
Property NameValue
DescriptionCopper chaperone
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:134583..135779 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036163HMA_dom_sf
IPR006121HeavyMe-assoc_HMA
Homology
BLAST of NO26G00420 vs. NCBI_GenBank
Match: XP_005853700.1 (copper chaperone [Nannochloropsis gaditana CCMP526] >EKU22660.1 copper chaperone [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.4 bits (241), Expect = 3.100e-17
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0
Query:   45 ASTTTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVAL 118
            A  TTTF+VGMTC+GC+NA++RILGKMEG+T+I+T++  KK VVV  ED V+A+D+L AL KWGEAAGK+V +
Sbjct:    3 APKTTTFHVGMTCDGCANAVKRILGKMEGVTAIDTNVPEKK-VVVQTEDHVQATDLLTALAKWGEAAGKEVKM 74          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: OEU17560.1 (copper chaperone-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 86.7 bits (213), Expect = 5.500e-14
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 0
Query:   49 TTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            TTF+VGMTCEGC+NA++RI  KMEG++S ETDLE KKVVV  A+D V    +L  L+KW  A+GK VALA
Sbjct:    4 TTFDVGMTCEGCANAVKRIFKKMEGVSSCETDLETKKVVVT-ADDSVTPEAMLEKLQKWSSASGKSVALA 72          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: GAX25117.1 (hypothetical protein FisN_10Lh315 [Fistulifera solaris])

HSP 1 Score: 83.2 bits (204), Expect = 6.000e-13
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = 0
Query:   49 TTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            T FNVGMTCEGC+ A++RILGK+EG++ I+TD+ A K+V+V A++ V    +L  LEKWG+AAGK V L+
Sbjct:    4 TRFNVGMTCEGCAAAVKRILGKIEGVSDIDTDV-ANKIVIVQADESVTPEMMLEKLEKWGQAAGKTVELS 72          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: GAX18488.1 (hypothetical protein FisN_10Hh315 [Fistulifera solaris])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0
Query:   49 TTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            T FNVGMTCEGC+ A++RIL K+EG++ I+TD+ A K V+V A++ V    +L  LEKWG+AAGK V LA
Sbjct:    4 TRFNVGMTCEGCAAAVKRILSKLEGVSEIDTDV-ANKTVIVQADESVTPEMMLEKLEKWGQAAGKTVELA 72          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: CBJ30384.1 (copper chaperone [Ectocarpus siliculosus])

HSP 1 Score: 76.3 bits (186), Expect = 7.400e-11
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 0
Query:   46 STTTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            S TT FNVGMTC+GC+NA +RILGKMEG++++E D+ A K V V ++       +L AL KW  A+GK V LA
Sbjct:    2 SETTVFNVGMTCDGCANATKRILGKMEGVSAVEADVPA-KTVTVSSDGSTTKQAMLDALLKWSAASGKSVELA 73          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: OQR84700.1 (hypothetical protein ACHHYP_13037 [Achlya hypogyna])

HSP 1 Score: 70.1 bits (170), Expect = 5.300e-9
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query:   44 MASTTTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            MA   T FNVGMTC GCS+A  RIL K++G+ S+  D++AK VVV    D      +LAAL KW  A+GK V LA
Sbjct:    1 MADVVTVFNVGMTCGGCSSACERILLKIDGVKSVACDIDAKTVVVTGTAD---PQVMLAALLKWSAASGKSVELA 72          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: XP_009515030.1 (hypothetical protein PHYSODRAFT_284132 [Phytophthora sojae] >EGZ27755.1 hypothetical protein PHYSODRAFT_284132 [Phytophthora sojae])

HSP 1 Score: 69.7 bits (169), Expect = 6.900e-9
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query:   49 TTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            T F VGMTC+GCS+A  RIL K+EG+TS++ D+E ++++V   E     + +L AL+KW +A+GK VALA
Sbjct:    5 TEFKVGMTCDGCSSACTRILTKIEGVTSVKCDVEKQQILV---EGDADENAMLEALQKWSKASGKSVALA 71          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: GAX95207.1 (Hypothetical protein PINS_003106 [Pythium insidiosum])

HSP 1 Score: 67.4 bits (163), Expect = 3.400e-8
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   48 TTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVV-HAEDKVKASDILAALEKWGEAAGKDVALA 119
            TT F VGMTCEGCS+A  RIL K+ G+  ++ D+E ++V+V   A+D+V    +L AL KW +A+GK VALA
Sbjct:    4 TTEFKVGMTCEGCSSACTRILSKIPGVQEVKCDIEKQQVLVTGDADDQV----MLDALLKWSQASGKSVALA 71          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: XP_008612796.1 (hypothetical protein SDRG_08680 [Saprolegnia diclina VS20] >EQC33573.1 hypothetical protein SDRG_08680 [Saprolegnia diclina VS20])

HSP 1 Score: 66.2 bits (160), Expect = 7.600e-8
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query:   44 MASTTTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVAL 118
            M+   T F VGMTC GCS+A  RIL K+ G+ S+  D+EA++V+V  + D   A  +LAAL KW  A+GK V L
Sbjct:    1 MSDVVTEFKVGMTCGGCSSACERILVKIPGVKSVACDIEAQQVLVTGSAD---AQTMLAALLKWSAASGKSVEL 71          
BLAST of NO26G00420 vs. NCBI_GenBank
Match: XP_024580734.1 (copper transport protein atox1 [Plasmopara halstedii] >CEG44365.1 copper transport protein atox1 [Plasmopara halstedii])

HSP 1 Score: 66.2 bits (160), Expect = 7.600e-8
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 0
Query:   49 TTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA 119
            T F VGMTCEGCS+A  RIL K+EG+T ++ D+E ++++V   E     + +L AL KW +A+GK V LA
Sbjct:    5 TEFKVGMTCEGCSSACTRILTKIEGVTDVKCDIEKQQILV---EGDADTNTMLEALLKWSKASGKTVELA 71          
The following BLAST results are available for this feature:
BLAST of NO26G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
XP_005853700.13.100e-1764.38copper chaperone [Nannochloropsis gaditana CCMP526... [more]
OEU17560.15.500e-1462.86copper chaperone-like protein [Fragilariopsis cyli... [more]
GAX25117.16.000e-1357.14hypothetical protein FisN_10Lh315 [Fistulifera sol... [more]
GAX18488.12.300e-1257.14hypothetical protein FisN_10Hh315 [Fistulifera sol... [more]
CBJ30384.17.400e-1153.42copper chaperone [Ectocarpus siliculosus][more]
OQR84700.15.300e-952.00hypothetical protein ACHHYP_13037 [Achlya hypogyna... [more]
XP_009515030.16.900e-950.00hypothetical protein PHYSODRAFT_284132 [Phytophtho... [more]
GAX95207.13.400e-851.39Hypothetical protein PINS_003106 [Pythium insidios... [more]
XP_008612796.17.600e-848.65hypothetical protein SDRG_08680 [Saprolegnia dicli... [more]
XP_024580734.17.600e-848.57copper transport protein atox1 [Plasmopara halsted... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR009ncniR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00420.1NO26G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614991gene_11384Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101118g2gene7374Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00420.1NO26G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00420 ID=NO26G00420|Name=NO26G00420|organism=Nannochloropsis oceanica|type=gene|length=1197bp
ATGTGGGCATGTAGGATAAGGGTGTGTCCCCATATTTCCCCCAAAAGgta
aagcagcagcggagtcaaggaccttcgatacactagtctaagccctggtg
ctttggccagatgtagagcgtgggtggcaaatgaatttgggcgtttcccc
cgtttctcctcgctctgcagttgctctggcatggtccgattccttttgcg
tgtggcttttttttctctttcacctccccttccgctttgaccgacgctcc
ccctataagcctacctcgcttatcccagAGAAGGAACAAGAGTACAGCCT
CCACTTGGCCTGTCAACGCTTCAGAAGgtatgtcatcctttaatgcttac
aaaagatcagaaggattgagagaagtggattatgagcttaggggtgactc
gcctttggcgatttcagggttgtcacgttccttcgttgaaaacccccatg
caaggcaccaactccgaagcatattgccaacactctcctttccttcctcc
ctccctttccctgcgcagCACGAGGAAAACGGGAACACACGCTTTGACCA
CATGGCTAGCACTACGACAACGTTCAACGTGGGCATGACTTGCGAAGgta
aatatagacacacatgcacacaacgcggattacccgaaaattatttatga
cccggccgcagttcacacacgccaccatatgctctctctcccacacacct
gcagGCTGCTCCAATGCTATCAGGCGTATCCTTGGGAAGATGGAAGgtgc
gtcgttgtcagaagggactttgctcgcatcagctaacgcacgggtcacac
accagcgggatccgatcgccctccctcctctcctccctccctccctccct
ccctctttctctccctccctcctctctcctaaaagaatcggcctctgtcc
ctcactgctccagcttgtgtatggtaccacgcctgttctatcttcgccag
tctactggatgtgctcttcaccctcccctctgtttactcatttctccctc
cctcccggtcttccctccctccctccctccctccctccctcccttcttcc
tccaaagGCATCACTTCTATCGAGACCGACTTGGAGGCAAAAAAGGTAGT
AGTAGTCCACGCAGAGGACAAGGTCAAAGCAAGTGATATACTGGCCGCCT
TGGAAAAGTGGGGAGAGGCTGCCGGGAAGGATGTGGCCTTGGCGTGA
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protein sequence of NO26G00420.1

>NO26G00420.1-protein ID=NO26G00420.1-protein|Name=NO26G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MWACRIRVCPHISPKREGTRVQPPLGLSTLQKHEENGNTRFDHMASTTTT
FNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDI
LAALEKWGEAAGKDVALA*
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Synonyms
Publications