NO26G00420.1, NO26G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00420.1
Unique NameNO26G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length357
Alignment locationchr26:134583..135779 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:134583..135779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00420.1 vs.
Match: XP_005853700.1 (copper chaperone [Nannochloropsis gaditana CCMP526]; EKU22660.1 copper chaperone [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.4 bits (241), Expect = 3.100e-17
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0 
Query:   45 ASTTTTFNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVAL 118
            A  TTTF+VGMTC+GC+NA++RILGKMEG+T+I+T++  KK VVV  ED V+A+D+L AL KWGEAAGK+V +
Sbjct:    3 APKTTTFHVGMTCDGCANAVKRILGKMEGVTAIDTNVPEKK-VVVQTEDHVQATDLLTALAKWGEAAGKEVKM 74
The following BLAST results are available for this feature:
BLAST of NO26G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853700.13.100e-1764.38copper chaperone [Nannochloropsis gaditana CCMP526... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00420NO26G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00420.1NO26G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00420.1.cds1NO26G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00420.1.cds2NO26G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00420.1.cds3NO26G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00420.1.cds4NO26G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00420.1.cds5NO26G00420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00420.1 ID=NO26G00420.1|Name=NO26G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGTGGGCATGTAGGATAAGGGTGTGTCCCCATATTTCCCCCAAAAGAGA
AGGAACAAGAGTACAGCCTCCACTTGGCCTGTCAACGCTTCAGAAGCACG
AGGAAAACGGGAACACACGCTTTGACCACATGGCTAGCACTACGACAACG
TTCAACGTGGGCATGACTTGCGAAGGCTGCTCCAATGCTATCAGGCGTAT
CCTTGGGAAGATGGAAGGCATCACTTCTATCGAGACCGACTTGGAGGCAA
AAAAGGTAGTAGTAGTCCACGCAGAGGACAAGGTCAAAGCAAGTGATATA
CTGGCCGCCTTGGAAAAGTGGGGAGAGGCTGCCGGGAAGGATGTGGCCTT
GGCGTGA
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protein sequence of NO26G00420.1

>NO26G00420.1-protein ID=NO26G00420.1-protein|Name=NO26G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MWACRIRVCPHISPKREGTRVQPPLGLSTLQKHEENGNTRFDHMASTTTT
FNVGMTCEGCSNAIRRILGKMEGITSIETDLEAKKVVVVHAEDKVKASDI
LAALEKWGEAAGKDVALA*
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mRNA from alignment at chr26:134583..135779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00420.1 ID=NO26G00420.1|Name=NO26G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp|location=Sequence derived from alignment at chr26:134583..135779+ (Nannochloropsis oceanica)
ATGTGGGCATGTAGGATAAGGGTGTGTCCCCATATTTCCCCCAAAAGGTA
AAGCAGCAGCGGAGTCAAGGACCTTCGATACACTAGTCTAAGCCCTGGTG
CTTTGGCCAGATGTAGAGCGTGGGTGGCAAATGAATTTGGGCGTTTCCCC
CGTTTCTCCTCGCTCTGCAGTTGCTCTGGCATGGTCCGATTCCTTTTGCG
TGTGGCTTTTTTTTCTCTTTCACCTCCCCTTCCGCTTTGACCGACGCTCC
CCCTATAAGCCTACCTCGCTTATCCCAGAGAAGGAACAAGAGTACAGCCT
CCACTTGGCCTGTCAACGCTTCAGAAGGTATGTCATCCTTTAATGCTTAC
AAAAGATCAGAAGGATTGAGAGAAGTGGATTATGAGCTTAGGGGTGACTC
GCCTTTGGCGATTTCAGGGTTGTCACGTTCCTTCGTTGAAAACCCCCATG
CAAGGCACCAACTCCGAAGCATATTGCCAACACTCTCCTTTCCTTCCTCC
CTCCCTTTCCCTGCGCAGCACGAGGAAAACGGGAACACACGCTTTGACCA
CATGGCTAGCACTACGACAACGTTCAACGTGGGCATGACTTGCGAAGGTA
AATATAGACACACATGCACACAACGCGGATTACCCGAAAATTATTTATGA
CCCGGCCGCAGTTCACACACGCCACCATATGCTCTCTCTCCCACACACCT
GCAGGCTGCTCCAATGCTATCAGGCGTATCCTTGGGAAGATGGAAGGTGC
GTCGTTGTCAGAAGGGACTTTGCTCGCATCAGCTAACGCACGGGTCACAC
ACCAGCGGGATCCGATCGCCCTCCCTCCTCTCCTCCCTCCCTCCCTCCCT
CCCTCTTTCTCTCCCTCCCTCCTCTCTCCTAAAAGAATCGGCCTCTGTCC
CTCACTGCTCCAGCTTGTGTATGGTACCACGCCTGTTCTATCTTCGCCAG
TCTACTGGATGTGCTCTTCACCCTCCCCTCTGTTTACTCATTTCTCCCTC
CCTCCCGGTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCC
TCCAAAGGCATCACTTCTATCGAGACCGACTTGGAGGCAAAAAAGGTAGT
AGTAGTCCACGCAGAGGACAAGGTCAAAGCAAGTGATATACTGGCCGCCT
TGGAAAAGTGGGGAGAGGCTGCCGGGAAGGATGTGGCCTTGGCGTGA
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Coding sequence (CDS) from alignment at chr26:134583..135779+

>NO26G00420.1 ID=NO26G00420.1|Name=NO26G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr26:134583..135779+ (Nannochloropsis oceanica)
ATGTGGGCATGTAGGATAAGGGTGTGTCCCCATATTTCCCCCAAAAGAGA
AGGAACAAGAGTACAGCCTCCACTTGGCCTGTCAACGCTTCAGAAGCACG
AGGAAAACGGGAACACACGCTTTGACCACATGGCTAGCACTACGACAACG
TTCAACGTGGGCATGACTTGCGAAGGCTGCTCCAATGCTATCAGGCGTAT
CCTTGGGAAGATGGAAGGCATCACTTCTATCGAGACCGACTTGGAGGCAA
AAAAGGTAGTAGTAGTCCACGCAGAGGACAAGGTCAAAGCAAGTGATATA
CTGGCCGCCTTGGAAAAGTGGGGAGAGGCTGCCGGGAAGGATGTGGCCTT
GGCGTGA
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Synonyms
Publications