NO26G00340, NO26G00340 (gene) Nannochloropsis oceanica

Overview
NameNO26G00340
Unique NameNO26G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1734
Alignment locationchr26:105103..106836 -

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Properties
Property NameValue
DescriptionChc1-b-prov like-protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:105103..106836 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0044458motile cilium assembly
GO:0044458motile cilium assembly
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR027734DNAAF1
IPR003591Leu-rich_rpt_typical-subtyp
Homology
BLAST of NO26G00340 vs. NCBI_GenBank
Match: XP_005855309.1 (chc1-b-prov like-protein, partial [Nannochloropsis gaditana CCMP526] >EKU21051.1 chc1-b-prov like-protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.6 bits (623), Expect = 7.000e-61
Identity = 163/379 (43.01%), Postives = 187/379 (49.34%), Query Frame = 0
Query:   30 MTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESLGGGGRRDARVISGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRLGRGGWEGGGDRGGKNCGGGVEESKGGGKEAAVPRKLDEISVLSPSITISTSSSFSSSLSISEAAEHIALLPLASLPSLHTLDISNNHLIHATRVLLPSLHPXXXXXLLSLTMEGNPFMF--------PVNQGEDRSKTDINVIKNKNEFRKLCLLTLPQLKYLDRPIFPIERAVAEGWRIAGSKGGEGAREAWMRKEQEGHRESLRVYREWAR 401
            MTP++LR+LAL HDGYE PSLND LYLHFRGF RIENL PY+ L+ALWLDSNGLTE  IGE                        G+                                      G L GL  LVTLDVS NRL SL GVE C KL TL+  KNRLG  G E                                          S ++    SL +SEA E  AL PLA LPSLHTLD+S+NHL+HA R        XXXXX      E NPF+F         +  G  R       I    +FRKLCLL LP+LKYLDRPIFP+ERAVAEGWR          ++AW R+E+E HRE+LRVYR WA+
Sbjct:    1 MTPEILRQLALNHDGYECPSLNDTLYLHFRGFRRIENLGPYTGLRALWLDSNGLTE--IGEXXXXXXXXXXXXXXXXXXXXXXXXGKE------------------------------------GGCLQGLTELVTLDVSGNRLLSLRGVEACPKLRTLVAGKNRLGSAGIES-----------------------------------------SPTAPLPHSLPVSEATEFEALRPLAGLPSLHTLDLSHNHLVHALRAXXXXXXXXXXXXXXXXXXEANPFVFEPASPLPASIADGMCRPLPLSRPIATTQDFRKLCLLALPRLKYLDRPIFPLERAVAEGWRXXXXXXXXXVKQAWTRREEEAHRENLRVYRAWAQ 300          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: CUG89409.1 (Hypothetical protein, putative [Bodo saltans])

HSP 1 Score: 82.8 bits (203), Expect = 3.500e-12
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0
Query:   29 KMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESLGGGGRRDARVISGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRL 196
            +M+ +L+  +  A+ G+ TP LN++LYLHFRGF +IE L  + N +ALWL++N +T+    +GL  L  L  L+LQ+N +  L                                           G+   + +L +L++SHN L SL G+E    L  +L A NRL
Sbjct:   20 RMSEELISDICKANGGFRTPELNEKLYLHFRGFRKIEGLGSFVNCRALWLENNIITDV---DGLDNLPVLDSLFLQHNHIAKL---------------------------------------PSELGY--SVASLKSLNISHNMLESLNGIEHFPNLEKVLAANNRL 142          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: ORZ36021.1 (hypothetical protein BCR44DRAFT_33873 [Catenaria anguillulae PL171])

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-11
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 0
Query:    8 PALAAGTRPKDKEADDEQGGEKMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIEN-LNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESL 112
            PA  + +R   K+ D  +G   MT   L+ LA+   GY TP LND LYLH++GF +I + ++ Y+ LK+LWL+ N L+     + L  L +LRCLYLQ N  ES+
Sbjct:   14 PATLSFSRRSKKQVDG-KGFTLMTLPYLQELAVEQKGYRTPELNDNLYLHYKGFAQISDAISSYAGLKSLWLEGNALSAM---DHLHTLPNLRCLYLQENCFESI 114          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: CEL70830.1 (TPA: leucine rich repeat protein, putative [Neospora caninum Liverpool])

HSP 1 Score: 79.0 bits (193), Expect = 5.100e-11
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   27 GEKMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCL 102
            G  MT  LLR++  A   YE+P+LN++LY HFRGF +IENL+ Y+ ++ALWL+ NG+ +    EGL  L  L+CL
Sbjct:   88 GPSMTKALLRQICKASGQYESPALNEKLYFHFRGFTKIENLDSYTQVRALWLEGNGIRKI---EGLDNLKQLQCL 159          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: XP_002507290.1 (dynein associated LRR protein [Micromonas commoda] >ACO68548.1 dynein associated LRR protein [Micromonas commoda])

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-10
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   29 KMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTH---LRCLYLQNNLLESL 112
            +MT D LR +   + GY  P LND LYLHF+GF RI+NL+ Y+ +++++L+ N L      E L GL H   LRCLY+Q N++ +L
Sbjct:    4 EMTRDWLRYVCKENGGYSVPHLNDTLYLHFKGFDRIKNLDEYTAVRSIFLEGNAL------ESLDGLEHCRNLRCLYVQQNMIATL 83          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: CCW62742.1 (unnamed protein product [Phytomonas sp. isolate EM1])

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-10
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0
Query:   30 MTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLR----CLYLQNNLLESL 112
            MT +++     A+ GYE+P LND+L+LH +GF  I+NL PY+N+K LWL+ N +T       L GL H R     L+LQNN + SL
Sbjct:    1 MTKEVIVASCKANGGYESPKLNDQLFLHCKGFVEIKNLEPYTNVKVLWLEQNAIT------NLSGLEHQRDCLVSLFLQNNTICSL 80          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: CCW70576.1 (unnamed protein product [Phytomonas sp. isolate Hart1])

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-10
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   29 KMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTH----LRCLYLQNNLLESL 112
            +MT +++     A+ GYE+P LND+L+LH +GF  I+NL PY+N+K LWL+ N ++       L GL H    L  L+LQNN + SL
Sbjct:    3 EMTKEVIVASCKANGGYESPKLNDQLFLHCKGFVEIKNLKPYTNIKVLWLEQNAIS------NLSGLEHQSDCLISLFLQNNTIHSL 83          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: XP_005845263.1 (hypothetical protein CHLNCDRAFT_11901, partial [Chlorella variabilis] >EFN53161.1 hypothetical protein CHLNCDRAFT_11901, partial [Chlorella variabilis])

HSP 1 Score: 75.1 bits (183), Expect = 7.300e-10
Identity = 52/154 (33.77%), Postives = 67/154 (43.51%), Query Frame = 0
Query:   42 HDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESLGGGGRRDARVISGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRL 196
            H GY+TP LN  LY +F+GF  +  L  Y+ L+AL+L+ N L       GL  L  LRCL+LQ NLL +L  G                                          L+    L  L++S N+L  LEG+E C  L TLL A N L
Sbjct:   13 HHGYQTPHLNQTLYCNFKGFGSLACLEAYTGLRALFLEGNALESTA---GLPPLPELRCLFLQQNLLRTLTPGS-----------------------------------------LAAQPRLTYLNLSGNQLRGLEGLEGCGALCTLLAADNCL 122          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: XP_003056168.1 (dynein associated LRR protein [Micromonas pusilla CCMP1545] >EEH59544.1 dynein associated LRR protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-9
Identity = 84/351 (23.93%), Postives = 133/351 (37.89%), Query Frame = 0
Query:   29 KMTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESLGGGGRRDARVISGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRLGRGGWEGGGDRGGKNCGGGVEESKGGGKEAAVPRKLDEISVLSPSITISTSSSFSSSLSISEAAEHIALLPLASLPSLHTLDISNNHLIHATRVLLPSLHPXXXXXLLSLTMEGNPFMFPVNQGEDRSKTDINVIKNKNEFRKLCLLTLPQLKYL-DRPIFPIERAVAEGWRIAGSKGGEGARE 379
            +MT + L+     H  Y TPSLND+++LHF+GF RI++L  Y+ L++++L+ NGL +     GL    +LRCLY Q N++ ++        R +                                       +L TL+VS+N +  LE +     L TL  +                  +C                  KL ++     SI   T     S + + +                + +D S   ++     L  S+       L  L M+GNP                 V+ + +++RK  +  +P L YL DRP+F +ER  AE W I G      ARE
Sbjct:    3 EMTEEWLKAHCKKHGMYSTPSLNDKIFLHFQGFGRIQHLEEYTGLRSIFLEGNGLEDL---FGLERCKNLRCLYAQQNMIFAI-------PRTLP-------------------------------------TSLSTLNVSNNNVRKLENLGRLPVLQTLQAS------------------HC------------------KLHDLG----SIRELTKCKMLSCVDLQQ----------------NMIDGSPEDMVR----LFSSMQ-----SLACLYMQGNP-----------------VVSSMHQYRKRMIAAIPTLTYLDDRPVFSLERTCAEAWAIGGLTAERTARE 224          
BLAST of NO26G00340 vs. NCBI_GenBank
Match: OQR87727.1 (hypothetical protein ACHHYP_08087 [Achlya hypogyna])

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-8
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 0
Query:   15 RPKDKE-ADDEQGGEKMTPDL--LRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDS 81
            R KD+E   ++Q G+    DL  L ++ + +DGYETP LND L+ HF+GF +IE L P+ NLKALWL+S
Sbjct:   16 RKKDREKLREKQKGQMPVMDLETLTQICVDNDGYETPELNDNLFAHFKGFQKIEGLEPFYNLKALWLES 84          

HSP 2 Score: 61.2 bits (147), Expect = 1.100e-5
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0
Query:  336 FRKLCLLTLPQLKYLDRPIFPIERAVAEGWRIAGSKGGEGAREAWMRKEQEGHRESLRVYREW 399
            FRK  + +LPQL YLDRPIF +ERA A  W+  G++    AR A+++ E +  R +L+ +R+W
Sbjct:  210 FRKTYITSLPQLGYLDRPIFDLERATAAAWKAGGAEAEAQARAAFVQHEHDERRRTLQEFRDW 272          
The following BLAST results are available for this feature:
BLAST of NO26G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855309.17.000e-6143.01chc1-b-prov like-protein, partial [Nannochloropsis... [more]
CUG89409.13.500e-1231.14Hypothetical protein, putative [Bodo saltans][more]
ORZ36021.11.300e-1142.86hypothetical protein BCR44DRAFT_33873 [Catenaria a... [more]
CEL70830.15.100e-1149.33TPA: leucine rich repeat protein, putative [Neospo... [more]
XP_002507290.11.100e-1045.35dynein associated LRR protein [Micromonas commoda]... [more]
CCW62742.14.300e-1045.35unnamed protein product [Phytomonas sp. isolate EM... [more]
CCW70576.14.300e-1043.68unnamed protein product [Phytomonas sp. isolate Ha... [more]
XP_005845263.17.300e-1033.77hypothetical protein CHLNCDRAFT_11901, partial [Ch... [more]
XP_003056168.12.100e-923.93dynein associated LRR protein [Micromonas pusilla ... [more]
OQR87727.11.400e-850.72hypothetical protein ACHHYP_08087 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR009ncniR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00340.1NO26G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570324gene_11376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00340.1NO26G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00340 ID=NO26G00340|Name=NO26G00340|organism=Nannochloropsis oceanica|type=gene|length=1734bp
ATGCGGGCCACCAACAGCATTCCTGCGCTTGCTGCCGGCACCAGACCCAA
AGATAAGGAGGCGGACGACGAACAAGGCGGCGAAAAAATGACCCCCGACC
TCCTTCGACGCCTGGCCTTAGCGCATGATGgtacgtggctgctacgaaac
gactgaaaatccaagcggtccatttcccgctcttattttgattcctttct
atgatggccctgaaagtttgcctccgcttccctccctccctccctctctc
accccccccctccctccctagGTTATGAGACCCCCAGCCTCAACGACAGG
CTTTACCTGCATTTCCGTGGATTTCATCGCATCGAAAATCTCAATCCTTA
TTCTAACTTGAAAGCCTTGTGGCTGGATTCCAATGGGCTGACGGAGGAAG
GGATAGGGGAGGGATTGAGAGGATTGACCCATTTGAGGTGTTTATACTTA
CAGAACAATTTGTTGGAGAGCCTAGGAGGGGGGGGAAGGAGGGACGCAAG
AGTTATAAGTGGAGAAGAAGGAAATGATGGAGAGAGCGGCCGAGGAAGTG
ACGGTGATGGGGGCGGGGGAGGAGAAGGAGGGAGAAAGGGGGAAAGGCGG
AGAGGATGGTTGAGTGGATTGATAAACCTGGTGACCCTGGATGTGAGTCA
TAATCGTTTGGCTTCCTTGGAGGGGGTGGAGGAGTGCATCAAGTTGACGA
CCTTGTTGGTGGCTAAGAATAGGTTGGGGAGGGGCGGGTGGGAGGGAGGA
GGCGACAGAGGGGGGAAGAACTGTGGAGGTGGTGTGGAGGAGAGTAAGGG
TGGAGGAAAAGAAGCTGCTGTCCCCAGAAAGCTGGATGAAATCTCGGTCC
TCTCCCCATCCATCACCATCTCCACTTCTTCCTCCTTCTCGTCCTCCTTG
TCCATCTCCGAAGCTGCCGAGCACATCGCCCTCCTCCCCCTTGCCTCCCT
TCCCTCCCTCCACACTCTCGACATCAGCAACAACCACCTCATCCACGCGA
CCCGCGTCCTCCTTCCATCCCTCCATCCCTCTCTCCTCCCCTCCCTCCTC
TCCCTAACTATGGAAGGCAATCCATTCATGTTCCCTGTTAATCAAGGTGA
AGATAGAAGCAAAACAGATATCAATGTAATCAAAAATAAAAACGAATTTC
GGAAGCTTTGTCTCCTCACCCTCCCTCAGCTCAAATATCTCGATCGGCCC
ATATTCCCCATTGAGAGAGCTGTGGCCGAGGGCTGGAGGATAGCAGGAAG
TAAGGGAGGGGAAGGTGCGAGGGAGGCATGGATGAGGAAGGAGCAGGAAG
GGCATCGAGAGAGTTTAAGGGTGTACAGAGAGTGGGCTCGAAAAGCGAGG
AGGGAGGCAGGGGGGGAGGAGGAGGGGACGCAGGGAGAGGAAGAAGGGGA
TGACGTGGATGATGAGGAGAGAGAGGTGGACATGCGGATGGAGGTTGGAG
GAGGAGGAGGACGAACAGCAGCAGCAGAAGAGGACGATGGTTTGGACGAG
CAGCTTGAGCAAGGAAAGAAGGCAGCAGCAACCGCAGCAGCCACAGCAGC
AGTAGCGGCAGAAGCGTCCATAGATACAGCGACGGATAAAATCGCAGAAG
AGGACGAGGGAGGGAAAGAGGGATGGAGGACGGGAAAGAGAACGGGCAAA
ATATCGCTGGAGGGGGGAGAAGGGGAAGAGGTGCCTCCATTGTATGACGT
GTCAACAGGTCATTTGGTGATTAATGTGGAGTGA
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protein sequence of NO26G00340.1

>NO26G00340.1-protein ID=NO26G00340.1-protein|Name=NO26G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MRATNSIPALAAGTRPKDKEADDEQGGEKMTPDLLRRLALAHDGYETPSL
NDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRC
LYLQNNLLESLGGGGRRDARVISGEEGNDGESGRGSDGDGGGGGEGGRKG
ERRRGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRLGRGGW
EGGGDRGGKNCGGGVEESKGGGKEAAVPRKLDEISVLSPSITISTSSSFS
SSLSISEAAEHIALLPLASLPSLHTLDISNNHLIHATRVLLPSLHPSLLP
SLLSLTMEGNPFMFPVNQGEDRSKTDINVIKNKNEFRKLCLLTLPQLKYL
DRPIFPIERAVAEGWRIAGSKGGEGAREAWMRKEQEGHRESLRVYREWAR
KARREAGGEEEGTQGEEEGDDVDDEEREVDMRMEVGGGGGRTAAAEEDDG
LDEQLEQGKKAAATAAATAAVAAEASIDTATDKIAEEDEGGKEGWRTGKR
TGKISLEGGEGEEVPPLYDVSTGHLVINVE*
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Synonyms
Publications