NO26G00340.1, NO26G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00340.1
Unique NameNO26G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr26:105103..106836 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:105103..106836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO26G00340.1 vs.
Match: XP_005855309.1 (chc1-b-prov like-protein, partial [Nannochloropsis gaditana CCMP526]; EKU21051.1 chc1-b-prov like-protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 256.5 bits (654), Expect = 1.800e-64
Identity = 185/433 (42.73%), Postives = 227/433 (52.42%), Query Frame = 0 
Query:   30 MTPDLLRRLALAHDGYETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRCLYLQNNLLESLGGG--GRRDARVISGEEGNDGESGRGSDGDGGGGGEGGRKGERRRGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRLGRGGWEGGGDRGGKNCGGGVEESKGGGKEAAVPRKLDEISVLSPSITISTSSSFSSSLSISEAAEHIALLPLASLPSLHTLDISNNHLIHATRVLLPSLHPSLLPSLLSLTMEGNPFMF--------PVNQGEDRSKTDINVIKNKNEFRKLCLLTLPQLKYLDRPIFPIERAVAEGWRIAGSKGGEGAREAWMRKEQEGHRESLRVYREWARKARREAGGEEEGTQGEEEGDDVDDEEREVDMRMEVGGGG--GRTAAAEEDDG 451
            MTP++LR+LAL HDGYE PSLND LYLHFRGF RIENL PY                         T LR L+L +N L  +G G  G R  R +  +       G               KG +  G L GL  LVTLDVS NRL SL GVE C KL TL+  KNRLG  G E                                 + L  S+ +S ++ F +               LA LPSLHTLD+S+NHL+HA R +LP+L PSLLPSLLSLT+E NPF+F         +  G  R       I    +FRKLCLL LP+LKYLDRPIFP+ERAVAEGWR  G +GGE  ++AW R+E+E HRE+LRVYR WA++ ++E   E +G  GE+EG   D++E    M +  G G    R    E D G
Sbjct:    1 MTPEILRQLALNHDGYECPSLNDTLYLHFRGFRRIENLGPY-------------------------TGLRALWLDSNGLTEIGEGLGGLRQLRCLYLQNNLLESLG---------------KGGKEGGCLQGLTELVTLDVSGNRLLSLRGVEACPKLRTLVAGKNRLGSAGIES-----------------------------SPTAPLPHSLPVSEATEFEALRP------------LAGLPSLHTLDLSHNHLVHALRAVLPALLPSLLPSLLSLTLEANPFVFEPASPLPASIADGMCRPLPLSRPIATTQDFRKLCLLALPRLKYLDRPIFPLERAVAEGWREGGKEGGEEVKQAWTRREEEAHRENLRVYRAWAQRVKKEKLKEGKG-GGEKEGRRKDEDEDGGGMGVGEGEGDEEARLRTLERDMG 351
The following BLAST results are available for this feature:
BLAST of NO26G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855309.11.800e-6442.73chc1-b-prov like-protein, partial [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00340NO26G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00340.1NO26G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00340.1.cds1NO26G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00340.1.cds2NO26G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00340.1 ID=NO26G00340.1|Name=NO26G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGCGGGCCACCAACAGCATTCCTGCGCTTGCTGCCGGCACCAGACCCAA
AGATAAGGAGGCGGACGACGAACAAGGCGGCGAAAAAATGACCCCCGACC
TCCTTCGACGCCTGGCCTTAGCGCATGATGGTTATGAGACCCCCAGCCTC
AACGACAGGCTTTACCTGCATTTCCGTGGATTTCATCGCATCGAAAATCT
CAATCCTTATTCTAACTTGAAAGCCTTGTGGCTGGATTCCAATGGGCTGA
CGGAGGAAGGGATAGGGGAGGGATTGAGAGGATTGACCCATTTGAGGTGT
TTATACTTACAGAACAATTTGTTGGAGAGCCTAGGAGGGGGGGGAAGGAG
GGACGCAAGAGTTATAAGTGGAGAAGAAGGAAATGATGGAGAGAGCGGCC
GAGGAAGTGACGGTGATGGGGGCGGGGGAGGAGAAGGAGGGAGAAAGGGG
GAAAGGCGGAGAGGATGGTTGAGTGGATTGATAAACCTGGTGACCCTGGA
TGTGAGTCATAATCGTTTGGCTTCCTTGGAGGGGGTGGAGGAGTGCATCA
AGTTGACGACCTTGTTGGTGGCTAAGAATAGGTTGGGGAGGGGCGGGTGG
GAGGGAGGAGGCGACAGAGGGGGGAAGAACTGTGGAGGTGGTGTGGAGGA
GAGTAAGGGTGGAGGAAAAGAAGCTGCTGTCCCCAGAAAGCTGGATGAAA
TCTCGGTCCTCTCCCCATCCATCACCATCTCCACTTCTTCCTCCTTCTCG
TCCTCCTTGTCCATCTCCGAAGCTGCCGAGCACATCGCCCTCCTCCCCCT
TGCCTCCCTTCCCTCCCTCCACACTCTCGACATCAGCAACAACCACCTCA
TCCACGCGACCCGCGTCCTCCTTCCATCCCTCCATCCCTCTCTCCTCCCC
TCCCTCCTCTCCCTAACTATGGAAGGCAATCCATTCATGTTCCCTGTTAA
TCAAGGTGAAGATAGAAGCAAAACAGATATCAATGTAATCAAAAATAAAA
ACGAATTTCGGAAGCTTTGTCTCCTCACCCTCCCTCAGCTCAAATATCTC
GATCGGCCCATATTCCCCATTGAGAGAGCTGTGGCCGAGGGCTGGAGGAT
AGCAGGAAGTAAGGGAGGGGAAGGTGCGAGGGAGGCATGGATGAGGAAGG
AGCAGGAAGGGCATCGAGAGAGTTTAAGGGTGTACAGAGAGTGGGCTCGA
AAAGCGAGGAGGGAGGCAGGGGGGGAGGAGGAGGGGACGCAGGGAGAGGA
AGAAGGGGATGACGTGGATGATGAGGAGAGAGAGGTGGACATGCGGATGG
AGGTTGGAGGAGGAGGAGGACGAACAGCAGCAGCAGAAGAGGACGATGGT
TTGGACGAGCAGCTTGAGCAAGGAAAGAAGGCAGCAGCAACCGCAGCAGC
CACAGCAGCAGTAGCGGCAGAAGCGTCCATAGATACAGCGACGGATAAAA
TCGCAGAAGAGGACGAGGGAGGGAAAGAGGGATGGAGGACGGGAAAGAGA
ACGGGCAAAATATCGCTGGAGGGGGGAGAAGGGGAAGAGGTGCCTCCATT
GTATGACGTGTCAACAGGTCATTTGGTGATTAATGTGGAGTGA
back to top

protein sequence of NO26G00340.1

>NO26G00340.1-protein ID=NO26G00340.1-protein|Name=NO26G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MRATNSIPALAAGTRPKDKEADDEQGGEKMTPDLLRRLALAHDGYETPSL
NDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGLTHLRC
LYLQNNLLESLGGGGRRDARVISGEEGNDGESGRGSDGDGGGGGEGGRKG
ERRRGWLSGLINLVTLDVSHNRLASLEGVEECIKLTTLLVAKNRLGRGGW
EGGGDRGGKNCGGGVEESKGGGKEAAVPRKLDEISVLSPSITISTSSSFS
SSLSISEAAEHIALLPLASLPSLHTLDISNNHLIHATRVLLPSLHPSLLP
SLLSLTMEGNPFMFPVNQGEDRSKTDINVIKNKNEFRKLCLLTLPQLKYL
DRPIFPIERAVAEGWRIAGSKGGEGAREAWMRKEQEGHRESLRVYREWAR
KARREAGGEEEGTQGEEEGDDVDDEEREVDMRMEVGGGGGRTAAAEEDDG
LDEQLEQGKKAAATAAATAAVAAEASIDTATDKIAEEDEGGKEGWRTGKR
TGKISLEGGEGEEVPPLYDVSTGHLVINVE*
back to top

mRNA from alignment at chr26:105103..106836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00340.1 ID=NO26G00340.1|Name=NO26G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr26:105103..106836- (Nannochloropsis oceanica)
ATGCGGGCCACCAACAGCATTCCTGCGCTTGCTGCCGGCACCAGACCCAA
AGATAAGGAGGCGGACGACGAACAAGGCGGCGAAAAAATGACCCCCGACC
TCCTTCGACGCCTGGCCTTAGCGCATGATGGTACGTGGCTGCTACGAAAC
GACTGAAAATCCAAGCGGTCCATTTCCCGCTCTTATTTTGATTCCTTTCT
ATGATGGCCCTGAAAGTTTGCCTCCGCTTCCCTCCCTCCCTCCCTCTCTC
ACCCCCCCCCTCCCTCCCTAGGTTATGAGACCCCCAGCCTCAACGACAGG
CTTTACCTGCATTTCCGTGGATTTCATCGCATCGAAAATCTCAATCCTTA
TTCTAACTTGAAAGCCTTGTGGCTGGATTCCAATGGGCTGACGGAGGAAG
GGATAGGGGAGGGATTGAGAGGATTGACCCATTTGAGGTGTTTATACTTA
CAGAACAATTTGTTGGAGAGCCTAGGAGGGGGGGGAAGGAGGGACGCAAG
AGTTATAAGTGGAGAAGAAGGAAATGATGGAGAGAGCGGCCGAGGAAGTG
ACGGTGATGGGGGCGGGGGAGGAGAAGGAGGGAGAAAGGGGGAAAGGCGG
AGAGGATGGTTGAGTGGATTGATAAACCTGGTGACCCTGGATGTGAGTCA
TAATCGTTTGGCTTCCTTGGAGGGGGTGGAGGAGTGCATCAAGTTGACGA
CCTTGTTGGTGGCTAAGAATAGGTTGGGGAGGGGCGGGTGGGAGGGAGGA
GGCGACAGAGGGGGGAAGAACTGTGGAGGTGGTGTGGAGGAGAGTAAGGG
TGGAGGAAAAGAAGCTGCTGTCCCCAGAAAGCTGGATGAAATCTCGGTCC
TCTCCCCATCCATCACCATCTCCACTTCTTCCTCCTTCTCGTCCTCCTTG
TCCATCTCCGAAGCTGCCGAGCACATCGCCCTCCTCCCCCTTGCCTCCCT
TCCCTCCCTCCACACTCTCGACATCAGCAACAACCACCTCATCCACGCGA
CCCGCGTCCTCCTTCCATCCCTCCATCCCTCTCTCCTCCCCTCCCTCCTC
TCCCTAACTATGGAAGGCAATCCATTCATGTTCCCTGTTAATCAAGGTGA
AGATAGAAGCAAAACAGATATCAATGTAATCAAAAATAAAAACGAATTTC
GGAAGCTTTGTCTCCTCACCCTCCCTCAGCTCAAATATCTCGATCGGCCC
ATATTCCCCATTGAGAGAGCTGTGGCCGAGGGCTGGAGGATAGCAGGAAG
TAAGGGAGGGGAAGGTGCGAGGGAGGCATGGATGAGGAAGGAGCAGGAAG
GGCATCGAGAGAGTTTAAGGGTGTACAGAGAGTGGGCTCGAAAAGCGAGG
AGGGAGGCAGGGGGGGAGGAGGAGGGGACGCAGGGAGAGGAAGAAGGGGA
TGACGTGGATGATGAGGAGAGAGAGGTGGACATGCGGATGGAGGTTGGAG
GAGGAGGAGGACGAACAGCAGCAGCAGAAGAGGACGATGGTTTGGACGAG
CAGCTTGAGCAAGGAAAGAAGGCAGCAGCAACCGCAGCAGCCACAGCAGC
AGTAGCGGCAGAAGCGTCCATAGATACAGCGACGGATAAAATCGCAGAAG
AGGACGAGGGAGGGAAAGAGGGATGGAGGACGGGAAAGAGAACGGGCAAA
ATATCGCTGGAGGGGGGAGAAGGGGAAGAGGTGCCTCCATTGTATGACGT
GTCAACAGGTCATTTGGTGATTAATGTGGAGTGA
back to top

Coding sequence (CDS) from alignment at chr26:105103..106836-

>NO26G00340.1 ID=NO26G00340.1|Name=NO26G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr26:105103..106836- (Nannochloropsis oceanica)
ATGCGGGCCACCAACAGCATTCCTGCGCTTGCTGCCGGCACCAGACCCAA
AGATAAGGAGGCGGACGACGAACAAGGCGGCGAAAAAATGACCCCCGACC
TCCTTCGACGCCTGGCCTTAGCGCATGATGGTTATGAGACCCCCAGCCTC
AACGACAGGCTTTACCTGCATTTCCGTGGATTTCATCGCATCGAAAATCT
CAATCCTTATTCTAACTTGAAAGCCTTGTGGCTGGATTCCAATGGGCTGA
CGGAGGAAGGGATAGGGGAGGGATTGAGAGGATTGACCCATTTGAGGTGT
TTATACTTACAGAACAATTTGTTGGAGAGCCTAGGAGGGGGGGGAAGGAG
GGACGCAAGAGTTATAAGTGGAGAAGAAGGAAATGATGGAGAGAGCGGCC
GAGGAAGTGACGGTGATGGGGGCGGGGGAGGAGAAGGAGGGAGAAAGGGG
GAAAGGCGGAGAGGATGGTTGAGTGGATTGATAAACCTGGTGACCCTGGA
TGTGAGTCATAATCGTTTGGCTTCCTTGGAGGGGGTGGAGGAGTGCATCA
AGTTGACGACCTTGTTGGTGGCTAAGAATAGGTTGGGGAGGGGCGGGTGG
GAGGGAGGAGGCGACAGAGGGGGGAAGAACTGTGGAGGTGGTGTGGAGGA
GAGTAAGGGTGGAGGAAAAGAAGCTGCTGTCCCCAGAAAGCTGGATGAAA
TCTCGGTCCTCTCCCCATCCATCACCATCTCCACTTCTTCCTCCTTCTCG
TCCTCCTTGTCCATCTCCGAAGCTGCCGAGCACATCGCCCTCCTCCCCCT
TGCCTCCCTTCCCTCCCTCCACACTCTCGACATCAGCAACAACCACCTCA
TCCACGCGACCCGCGTCCTCCTTCCATCCCTCCATCCCTCTCTCCTCCCC
TCCCTCCTCTCCCTAACTATGGAAGGCAATCCATTCATGTTCCCTGTTAA
TCAAGGTGAAGATAGAAGCAAAACAGATATCAATGTAATCAAAAATAAAA
ACGAATTTCGGAAGCTTTGTCTCCTCACCCTCCCTCAGCTCAAATATCTC
GATCGGCCCATATTCCCCATTGAGAGAGCTGTGGCCGAGGGCTGGAGGAT
AGCAGGAAGTAAGGGAGGGGAAGGTGCGAGGGAGGCATGGATGAGGAAGG
AGCAGGAAGGGCATCGAGAGAGTTTAAGGGTGTACAGAGAGTGGGCTCGA
AAAGCGAGGAGGGAGGCAGGGGGGGAGGAGGAGGGGACGCAGGGAGAGGA
AGAAGGGGATGACGTGGATGATGAGGAGAGAGAGGTGGACATGCGGATGG
AGGTTGGAGGAGGAGGAGGACGAACAGCAGCAGCAGAAGAGGACGATGGT
TTGGACGAGCAGCTTGAGCAAGGAAAGAAGGCAGCAGCAACCGCAGCAGC
CACAGCAGCAGTAGCGGCAGAAGCGTCCATAGATACAGCGACGGATAAAA
TCGCAGAAGAGGACGAGGGAGGGAAAGAGGGATGGAGGACGGGAAAGAGA
ACGGGCAAAATATCGCTGGAGGGGGGAGAAGGGGAAGAGGTGCCTCCATT
GTATGACGTGTCAACAGGTCATTTGGTGATTAATGTGGAGTGA
back to top
Synonyms
Publications