NO26G00320, NO26G00320 (gene) Nannochloropsis oceanica

Overview
NameNO26G00320
Unique NameNO26G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1395
Alignment locationchr26:102135..103529 -

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Properties
Property NameValue
DescriptionKOW domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:102135..103529 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR003256Ribosomal_L24
IPR005824KOW
Homology
BLAST of NO26G00320 vs. NCBI_GenBank
Match: EWM23073.1 (putative 39s ribosomal protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 1.200e-68
Identity = 131/182 (71.98%), Postives = 156/182 (85.71%), Query Frame = 0
Query:    1 MSTMNAALKGMKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVGGKDTLPADVYEVTWEEYAAPERKEKKKEGPTF 183
            MSTMNAA+KGMK+L++R+PHKKK +EPIK SRWTI KGD+VEVINGPE GKQGT++KVLRA NR+II+GVNVRRRTQ+P+ +GQ GKIITYPAAL+VSNVSLLDPES +PT+V+RR+LE G +VRV   S  +LPKPE++RE IRRAAV  KDTLP DVYEVT+E Y AP R  KK +GP F
Sbjct:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRF 182          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_005855310.1 (50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526] >EKU21052.1 50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.0 bits (528), Expect = 2.600e-50
Identity = 102/144 (70.83%), Postives = 121/144 (84.03%), Query Frame = 0
Query:   39 DQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVGGKDTLPADVYEVTWEEYAAPERKEKKKEGPTF 183
            D+VEVINGPE GKQGT++KVLRA NR+II+GVNVRRRTQ+P+ +GQ GKIITYPAAL+VSNVSLLDPES +PT+V+RR+LE G +VRV   S  +LPKPE++RE IRRAAV  KDTLP DVYEVT+E Y AP R  KK +GP F
Sbjct:  217 DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRF 360          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: CBJ32696.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.7 bits (335), Expect = 6.200e-28
Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 0
Query:    2 STMNAALKGMKLLQQRIPHKKKTVEP---IKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTW 165
            ++ N  +  MK L +     K  + P   I +++WTIL+GD+V V+NG   G+ G V  V+R  NR+I+EGVN+R+ ++KP   G+ G  +T  AA++V+NV+L+ PE+  PTKVS +FLEDGTRVRV +RSG V+P+PE    R   R    G KDT+  DV E+T+
Sbjct:    3 ASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGR-GTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITF 169          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_008874917.1 (ribosomal protein L24 [Aphanomyces invadans] >ETV96654.1 ribosomal protein L24 [Aphanomyces invadans])

HSP 1 Score: 127.9 bits (320), Expect = 3.400e-26
Identity = 63/154 (40.91%), Postives = 98/154 (63.64%), Query Frame = 0
Query:   16 QRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTWEEY 168
            +++P ++K + PI    W I +GD VEVI+GP +GKQG V +V+RA N +++  +N+R R  K  P    G+I   P  ++ SNV+L+DP   +PT++  RF EDG R+R+ +++G V+PKP+   +R+  RR   G  DT P DV E T E++
Sbjct:   10 RKMPKREKLIAPI--PTWNIFRGDLVEVISGPHRGKQGEVKEVIRAKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDPSIGKPTRIGIRFAEDGERLRISKKTGTVIPKPDVLKERQAPRRTETGPLDTAPEDVLERTVEDW 161          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: GAX99166.1 (ribosomal protein L24 [Pythium insidiosum])

HSP 1 Score: 126.7 bits (317), Expect = 7.600e-26
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 0
Query:   21 KKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTWEEY 168
            K K +E IK   W I +GD VEVINGP KGKQG V +V+R  N++I+E +N+  R  K TP   AG+    P  ++ SNV+L+DP   +PT+V+ RF +DG +VRV +++G ++PKPE   +R   RR   G  DT P DV E T +E+
Sbjct:   16 KAKPIELIK--NWHIYRGDLVEVINGPHKGKQGQVAQVIREKNKVIVENINMHHRYVKRTP-AAAGRSYLAPGPIHYSNVNLVDPSIGKPTRVAIRFTDDGDKVRVSKKTGTIIPKPEILKERHTPRRTETGPFDTAPEDVLESTVQEW 161          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_008609207.1 (hypothetical protein SDRG_05274 [Saprolegnia diclina VS20] >EQC37045.1 hypothetical protein SDRG_05274 [Saprolegnia diclina VS20])

HSP 1 Score: 124.0 bits (310), Expect = 4.900e-25
Identity = 64/155 (41.29%), Postives = 96/155 (61.94%), Query Frame = 0
Query:   11 MKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVT 164
            M    +++P ++K +  I   +W I +GD+VEV+ GP KGKQG V +V+RA N LI+E +N+R R  K  P    G+I   P  ++ SNV+L+D    +PT+++ RF E+G R+RV +++G ++PKPE   +R   RR   G  DT P DV E T
Sbjct:    5 MPAAMRKMPKREKLIAEI--PKWNIFRGDKVEVVAGPHKGKQGVVKEVVRAKNSLILEDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDETIGKPTRIAIRFSEEGERLRVSKKTGTIIPKPEVLKERHTPRRTETGPLDTAPEDVLERT 157          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: ETL35987.1 (ribosomal protein L24 [Phytophthora parasitica])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 65/149 (43.62%), Postives = 96/149 (64.43%), Query Frame = 0
Query:   21 KKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTWEEY 168
            KKK ++ IK   W I +GD+VE+I GP KG QG V+KV+R  N++I+E VN+  R  K TP   AG+    P+ ++ SNV+LLDP   +PT+++ RF ++G +VRV +++G ++PKP    +R N RR   G  DT P D  E T E++
Sbjct:   16 KKKPIDLIK--TWHIFRGDKVEIIAGPHKGTQGEVVKVVRDLNKVIVENVNMSHRYVKATP-AAAGRSYLSPSPIHYSNVNLLDPSIGKPTRIAIRFTDEGEKVRVSKKTGTIIPKPAILKERHNPRRTETGPFDTAPEDALERTVEDW 161          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_014527396.1 (ribosomal protein L24 [Blastocystis sp. subtype 4] >KNB43953.1 ribosomal protein L24 [Blastocystis sp. subtype 4])

HSP 1 Score: 122.5 bits (306), Expect = 1.400e-24
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 0
Query:   33 WTILKGD--QVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRA-----AVGGKDTLPADVYEVTWEEYAAPERKEKKKEGPTF 183
            WTI++GD  +VEVI+G +KGKQG VLKV R  NRL+IEGVN R+R  K T + QAG I    + +  SNV L+DPE+K+PTKV  + + DG R RV   SG V+PKP+   E+++RA     AVG KDTLP+DV EVT+     P+ + + +  P F
Sbjct:   33 WTIVRGDTVRVEVISGKDKGKQGKVLKVDRKLNRLLIEGVNFRKRYIKGT-DEQAGGIFDVESGVPYSNVQLVDPETKKPTKVKVKRV-DGIRQRVSMASGKVIPKPQ---ESMQRAHPVTSAVGPKDTLPSDVIEVTYN----PDVELRTRHRPLF 180          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_008908630.1 (ribosomal protein L24 [Phytophthora parasitica INRA-310] >ETI42580.1 ribosomal protein L24 [Phytophthora parasitica P1569] >ETK82598.1 ribosomal protein L24 [Phytophthora parasitica] >ETL89206.1 ribosomal protein L24 [Phytophthora parasitica] >ETM42465.1 ribosomal protein L24 [Phytophthora parasitica] >ETN06128.1 ribosomal protein L24 [Phytophthora parasitica INRA-310] >ETO71249.1 ribosomal protein L24 [Phytophthora parasitica P1976] >ETP12296.1 ribosomal protein L24 [Phytophthora parasitica CJ01A1] >ETP40424.1 ribosomal protein L24 [Phytophthora parasitica P10297])

HSP 1 Score: 121.7 bits (304), Expect = 2.500e-24
Identity = 64/149 (42.95%), Postives = 96/149 (64.43%), Query Frame = 0
Query:   21 KKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTWEEY 168
            KKK ++ IK   W I +GD+VE+I GP KG QG V+KV+R  N++I+E VN+  R  K TP   AG+    P+ ++ SNV+L+DP   +PT+++ RF ++G +VRV +++G ++PKP    +R N RR   G  DT P D  E T E++
Sbjct:   16 KKKPIDLIK--TWHIFRGDKVEIIAGPHKGTQGEVVKVVRDLNKVIVENVNMSHRYVKATP-AAAGRSYLSPSPIHYSNVNLVDPSIGKPTRIAIRFTDEGEKVRVSKKTGTIIPKPAILKERHNPRRTETGPFDTAPEDALERTVEDW 161          
BLAST of NO26G00320 vs. NCBI_GenBank
Match: XP_009833128.1 (ribosomal protein L24 [Aphanomyces astaci] >ETV77341.1 ribosomal protein L24 [Aphanomyces astaci])

HSP 1 Score: 121.7 bits (304), Expect = 2.500e-24
Identity = 60/153 (39.22%), Postives = 96/153 (62.75%), Query Frame = 0
Query:   16 QRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPE--WKRENIRRAAVGGKDTLPADVYEVTWEE 167
            +++P ++K +       W I +GD VEVI+GP +GKQG V +V+R  N +++  +N+R R  K  P    G+I   P A++ SNV+L+DP   +PT++  RF EDG R+R+ ++SG ++PKP+   +R++ RR   G  DT P DV E T ++
Sbjct:   10 RKMPKREKFIPSFPS--WNIFRGDLVEVISGPHRGKQGEVKEVIREKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGAIHYSNVNLIDPSIGKPTRIGIRFGEDGERLRISKKSGTIIPKPDVLKERQSPRRTETGPLDTAPEDVLERTVDD 160          
The following BLAST results are available for this feature:
BLAST of NO26G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23073.11.200e-6871.98putative 39s ribosomal protein mitochondrial precu... [more]
XP_005855310.12.600e-5070.8350s ribosomal protein l24 [Nannochloropsis gaditan... [more]
CBJ32696.16.200e-2844.64conserved unknown protein [Ectocarpus siliculosus][more]
XP_008874917.13.400e-2640.91ribosomal protein L24 [Aphanomyces invadans] >ETV9... [more]
GAX99166.17.600e-2645.64ribosomal protein L24 [Pythium insidiosum][more]
XP_008609207.14.900e-2541.29hypothetical protein SDRG_05274 [Saprolegnia dicli... [more]
ETL35987.11.100e-2443.62ribosomal protein L24 [Phytophthora parasitica][more]
XP_014527396.11.400e-2449.68ribosomal protein L24 [Blastocystis sp. subtype 4]... [more]
XP_008908630.12.500e-2442.95ribosomal protein L24 [Phytophthora parasitica INR... [more]
XP_009833128.12.500e-2439.22ribosomal protein L24 [Aphanomyces astaci] >ETV773... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR009ncniR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00320.1NO26G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614941gene_11374Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100598g2gene7380Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00320.1NO26G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00320 ID=NO26G00320|Name=NO26G00320|organism=Nannochloropsis oceanica|type=gene|length=1395bp
GGAAAAATAGAAGTGAAATAGTGGCAAAGGGATGGGTGGGGAGGTCAATG
TCTCTTTTTCGAGGGGTGGTTGGGAGAGAAAAGCACGCGGTTCGCAGCAC
AATGCCGCCACCAAGTGATCAAAATACATGCATGTCAATATTACCCGTGT
CTGTGTGTTTGGTCATTGGAGTAGGGCAAGCAACAGGCCAAAGTGTGCTC
GAAATAGGGGTGTAAAAAAGCGGACAAGCAACGGCTCTCTCGTCTCGCCT
CTCGCGTCGCTTCACACCATGATGACTTGTTGGTAGTGCTGCTTGTGTCC
GTCTCCGCCTCTACACCCACACACACCACCTTATTCTCAACTCTCCGGAA
TCATGACCAACCCACATTCACGCGTAGGCCGGGCTCTAGACCCTTTGGTG
GAGGAGGTGCCTTGCTTGTTCGCATCTGATCGAGCCAGAGGTGGTATTAT
ATCCACGTCTGCAGTGTCTCTCCCTGTCTCCCTGTCTCTCCTCTTGCCCT
CCTTCCCAATCTCCTGAGCCAAGTACCACAAAAGCTATGTCGACAATGAA
CGCTGCCCTGAAGGGCATGAAGCTGTTGCAGCAACGGATCCCCCACAAAA
AGAAGACGGTGGAGCCCATCAAGCAGTCACGgttagtgggaagggaggga
agggaggagggagggatggagggtcaaggggaagcaggatgagcgcatgt
aggcgatgcaccctcatgcgcaggtggtgaggcgcgcggtgtggagtggc
gggaaggctcgcagtgtggagtagcgggaggtctctgcacgtgctggcag
gcactcactttcatgctttccatgcacacacatatacacacacacagGTG
GACCATCTTGAAGGGCGACCAAGTCGAGGTAATTAATGGCCCGGAAAAGG
GCAAACAAGGCACTGTCCTCAAGGTCCTCCGGGCTGCCAACCGTCTCATC
ATCGAAGGCGTGAACGTCAGAAGGCGCACCCAAAAACCCACCCCCAACGG
ACAAGCAGGCAAGATTATCACCTACCCCGCCGCACTGAATGTTTCCAACG
TCTCCTTACTCGATCCCGAAAGCAAGCAGCCTACCAAGGTCTCCCGTCGT
TTCTTGGAAGATGGGACACGGGTCCGGGTGGGGAGGAGGAGTGGCGTCGT
TCTGCCCAAGCCCGAGTGGAAGAGAGAGAATATCAGGAGGGCGGCAGTGG
GGGGAAAAGACACCCTGCCCGCAGATGTGTACGAAGTAACATGGGAGGAA
TACGCGGCGCCGGAGAGGAAGGAGAAGAAGAAGGAAGGGCCTACATTCGC
GGCAGCCGCAGCCACGAAAGAATGATAAAGGGGAAAAACATGAACAAAAG
GAAAATAGGAACAGAAAGAAAGAAGAAAGAATTGGATAAATTGAT
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protein sequence of NO26G00320.1

>NO26G00320.1-protein ID=NO26G00320.1-protein|Name=NO26G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSTMNAALKGMKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKG
KQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNV
SLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVG
GKDTLPADVYEVTWEEYAAPERKEKKKEGPTFAAAAATKE*
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Synonyms
Publications