NO26G00320.1, NO26G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00320.1
Unique NameNO26G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr26:102135..103529 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:102135..103529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00320.1 vs.
Match: EWM23073.1 (putative 39s ribosomal protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 1.200e-68
Identity = 131/182 (71.98%), Postives = 156/182 (85.71%), Query Frame = 0 
Query:    1 MSTMNAALKGMKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKGKQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNVSLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVGGKDTLPADVYEVTWEEYAAPERKEKKKEGPTF 183
            MSTMNAA+KGMK+L++R+PHKKK +EPIK SRWTI KGD+VEVINGPE GKQGT++KVLRA NR+II+GVNVRRRTQ+P+ +GQ GKIITYPAAL+VSNVSLLDPES +PT+V+RR+LE G +VRV   S  +LPKPE++RE IRRAAV  KDTLP DVYEVT+E Y AP R  KK +GP F
Sbjct:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRF 182
The following BLAST results are available for this feature:
BLAST of NO26G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23073.11.200e-6871.98putative 39s ribosomal protein mitochondrial precu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00320NO26G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00320.1NO26G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00320.1.cds1NO26G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00320.1.cds2NO26G00320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00320.1 ID=NO26G00320.1|Name=NO26G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
GGAAAAATAGAAGTGAAATAGTGGCAAAGGGATGGGTGGGGAGGTCAATG
TCTCTTTTTCGAGGGGTGGTTGGGAGAGAAAAGCACGCGGTTCGCAGCAC
AATGCCGCCACCAAGTGATCAAAATACATGCATGTCAATATTACCCGTGT
CTGTGTGTTTGGTCATTGGAGTAGGGCAAGCAACAGGCCAAAGTGTGCTC
GAAATAGGGGTGTAAAAAAGCGGACAAGCAACGGCTCTCTCGTCTCGCCT
CTCGCGTCGCTTCACACCATGATGACTTGTTGGTAGTGCTGCTTGTGTCC
GTCTCCGCCTCTACACCCACACACACCACCTTATTCTCAACTCTCCGGAA
TCATGACCAACCCACATTCACGCGTAGGCCGGGCTCTAGACCCTTTGGTG
GAGGAGGTGCCTTGCTTGTTCGCATCTGATCGAGCCAGAGGTGGTATTAT
ATCCACGTCTGCAGTGTCTCTCCCTGTCTCCCTGTCTCTCCTCTTGCCCT
CCTTCCCAATCTCCTGAGCCAAGTACCACAAAAGCTATGTCGACAATGAA
CGCTGCCCTGAAGGGCATGAAGCTGTTGCAGCAACGGATCCCCCACAAAA
AGAAGACGGTGGAGCCCATCAAGCAGTCACGGTGGACCATCTTGAAGGGC
GACCAAGTCGAGGTAATTAATGGCCCGGAAAAGGGCAAACAAGGCACTGT
CCTCAAGGTCCTCCGGGCTGCCAACCGTCTCATCATCGAAGGCGTGAACG
TCAGAAGGCGCACCCAAAAACCCACCCCCAACGGACAAGCAGGCAAGATT
ATCACCTACCCCGCCGCACTGAATGTTTCCAACGTCTCCTTACTCGATCC
CGAAAGCAAGCAGCCTACCAAGGTCTCCCGTCGTTTCTTGGAAGATGGGA
CACGGGTCCGGGTGGGGAGGAGGAGTGGCGTCGTTCTGCCCAAGCCCGAG
TGGAAGAGAGAGAATATCAGGAGGGCGGCAGTGGGGGGAAAAGACACCCT
GCCCGCAGATGTGTACGAAGTAACATGGGAGGAATACGCGGCGCCGGAGA
GGAAGGAGAAGAAGAAGGAAGGGCCTACATTCGCGGCAGCCGCAGCCACG
AAAGAATGATAAAGGGGAAAAACATGAACAAAAGGAAAATAGGAACAGAA
AGAAAGAAGAAAGAATTGGATAAATTGAT
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protein sequence of NO26G00320.1

>NO26G00320.1-protein ID=NO26G00320.1-protein|Name=NO26G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSTMNAALKGMKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKG
KQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNV
SLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVG
GKDTLPADVYEVTWEEYAAPERKEKKKEGPTFAAAAATKE*
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mRNA from alignment at chr26:102135..103529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00320.1 ID=NO26G00320.1|Name=NO26G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at chr26:102135..103529- (Nannochloropsis oceanica)
GGAAAAATAGAAGTGAAATAGTGGCAAAGGGATGGGTGGGGAGGTCAATG
TCTCTTTTTCGAGGGGTGGTTGGGAGAGAAAAGCACGCGGTTCGCAGCAC
AATGCCGCCACCAAGTGATCAAAATACATGCATGTCAATATTACCCGTGT
CTGTGTGTTTGGTCATTGGAGTAGGGCAAGCAACAGGCCAAAGTGTGCTC
GAAATAGGGGTGTAAAAAAGCGGACAAGCAACGGCTCTCTCGTCTCGCCT
CTCGCGTCGCTTCACACCATGATGACTTGTTGGTAGTGCTGCTTGTGTCC
GTCTCCGCCTCTACACCCACACACACCACCTTATTCTCAACTCTCCGGAA
TCATGACCAACCCACATTCACGCGTAGGCCGGGCTCTAGACCCTTTGGTG
GAGGAGGTGCCTTGCTTGTTCGCATCTGATCGAGCCAGAGGTGGTATTAT
ATCCACGTCTGCAGTGTCTCTCCCTGTCTCCCTGTCTCTCCTCTTGCCCT
CCTTCCCAATCTCCTGAGCCAAGTACCACAAAAGCTATGTCGACAATGAA
CGCTGCCCTGAAGGGCATGAAGCTGTTGCAGCAACGGATCCCCCACAAAA
AGAAGACGGTGGAGCCCATCAAGCAGTCACGGTTAGTGGGAAGGGAGGGA
AGGGAGGAGGGAGGGATGGAGGGTCAAGGGGAAGCAGGATGAGCGCATGT
AGGCGATGCACCCTCATGCGCAGGTGGTGAGGCGCGCGGTGTGGAGTGGC
GGGAAGGCTCGCAGTGTGGAGTAGCGGGAGGTCTCTGCACGTGCTGGCAG
GCACTCACTTTCATGCTTTCCATGCACACACATATACACACACACAGGTG
GACCATCTTGAAGGGCGACCAAGTCGAGGTAATTAATGGCCCGGAAAAGG
GCAAACAAGGCACTGTCCTCAAGGTCCTCCGGGCTGCCAACCGTCTCATC
ATCGAAGGCGTGAACGTCAGAAGGCGCACCCAAAAACCCACCCCCAACGG
ACAAGCAGGCAAGATTATCACCTACCCCGCCGCACTGAATGTTTCCAACG
TCTCCTTACTCGATCCCGAAAGCAAGCAGCCTACCAAGGTCTCCCGTCGT
TTCTTGGAAGATGGGACACGGGTCCGGGTGGGGAGGAGGAGTGGCGTCGT
TCTGCCCAAGCCCGAGTGGAAGAGAGAGAATATCAGGAGGGCGGCAGTGG
GGGGAAAAGACACCCTGCCCGCAGATGTGTACGAAGTAACATGGGAGGAA
TACGCGGCGCCGGAGAGGAAGGAGAAGAAGAAGGAAGGGCCTACATTCGC
GGCAGCCGCAGCCACGAAAGAATGATAAAGGGGAAAAACATGAACAAAAG
GAAAATAGGAACAGAAAGAAAGAAGAAAGAATTGGATAAATTGAT
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Coding sequence (CDS) from alignment at chr26:102135..103529-

>NO26G00320.1 ID=NO26G00320.1|Name=NO26G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr26:102135..103529- (Nannochloropsis oceanica)
ATGTCGACAATGAACGCTGCCCTGAAGGGCATGAAGCTGTTGCAGCAACG
GATCCCCCACAAAAAGAAGACGGTGGAGCCCATCAAGCAGTCACGGTGGA
CCATCTTGAAGGGCGACCAAGTCGAGGTAATTAATGGCCCGGAAAAGGGC
AAACAAGGCACTGTCCTCAAGGTCCTCCGGGCTGCCAACCGTCTCATCAT
CGAAGGCGTGAACGTCAGAAGGCGCACCCAAAAACCCACCCCCAACGGAC
AAGCAGGCAAGATTATCACCTACCCCGCCGCACTGAATGTTTCCAACGTC
TCCTTACTCGATCCCGAAAGCAAGCAGCCTACCAAGGTCTCCCGTCGTTT
CTTGGAAGATGGGACACGGGTCCGGGTGGGGAGGAGGAGTGGCGTCGTTC
TGCCCAAGCCCGAGTGGAAGAGAGAGAATATCAGGAGGGCGGCAGTGGGG
GGAAAAGACACCCTGCCCGCAGATGTGTACGAAGTAACATGGGAGGAATA
CGCGGCGCCGGAGAGGAAGGAGAAGAAGAAGGAAGGGCCTACATTCGCGG
CAGCCGCAGCCACGAAAGAATGA
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Synonyms
Publications