NO26G00300, NO26G00300 (gene) Nannochloropsis oceanica

Overview
NameNO26G00300
Unique NameNO26G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr26:98047..99527 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:98047..99527 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G00300 vs. NCBI_GenBank
Match: EWM23066.1 (hypothetical protein Naga_101466g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-15
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0 
Query:    4 PPLHLVVFSKDRAFQCTALLLSLDLYMSPAPTSLTVIYKASSPFFLEGYHELEEARRVGSRNNDCKSERNEGREIGRALEGGNKLTTSAAPSPVCLPARFVPEDALGGFASALAAV 120
            P LHL+ FSKDR+FQC  LL SLD Y+SP P SLTV+Y  SSP FL+GY +LE  R+ G       + + +    G      + L   +  S  C+P  F+ ED  GGF++ALA V
Sbjct:   26 PSLHLLAFSKDRSFQCRTLLHSLDTYLSPPPASLTVLYTVSSPTFLKGYQDLERMRQRGDHPGGKAAHKEDEGVPGPT---KSSLDDGSEQSSTCIPTTFLHEDEAGGFSTALAMV 138
The following BLAST results are available for this feature:
BLAST of NO26G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23066.11.400e-1544.83hypothetical protein Naga_101466g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00300.1NO26G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00300.1NO26G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00300 ID=NO26G00300|Name=NO26G00300|organism=Nannochloropsis oceanica|type=gene|length=1481bp
ATGTCATCACCGCCCCTCCACCTCGTCGTCTTTTCCAAAGACCGCGCCTT
CCAATGCACTGCCCTCCTTCTCTCCCTCGACCTGTACATGTCCCCTGCGC
CCACGAGTCTCACTGTCATCTACAAGGCGTCCTCCCCTTTTTTCCTGGAA
GGGTACCACGAGCTGGAGGAGGCCAGGAGGGTAGGAAGCCGCAATAACGA
TTGCAAGAGTGAAAGAAACGAAGGGAGAGAAATAGGGAGGGCATTGGAAG
GGGGAAACAAGCTCACCACTTCCGCTGCACCATCTCCTGTGTGCCTACCG
GCTAGGTTTGTGCCTGAGGACGCGTTGGGGGGGTTTGCCTCTGCCTTGGC
TGCTGTCATGGAGGGGTGGACAGAGGGAGGGAGGGAGGGCGGGAGGAAGG
ACAGGAAAGAGGGAAACGAGGAGGAAGAGGAGGCCTACGTGATGTGgttg
gtggacgatttccttttccattcccccttggacacgacccctttcctcac
cctcctttcaccaaagCGAGGGAAGGGAGGGGAGGAAGGAGAGAGAGGGG
GGGGCAGGAGGAGGAGGTGGGAGAGAGGGTGTGGGCCATCCACACCAAGC
TGCACCCAGGGATTTCCTACTCGCATACATTGGACAAGgtcaggaagaaa
gaagggaggcgggagggaaggagggagggcgggagggcgggagaaatgga
gggtgggttaagtgacaagaggcaatagtgcggctggcattcctcccacc
ctctcaccctcgctctcttcctactcgctctctcagGCCTTGCATGCCCC
CCCCTCCTCTTTCACCGTACCCTTGGCACGGCAGGGTTTCTCTTTGAGCG
CGACGAGACAAAGAACGACGACTGGCATTACCCTTGGGACCTCTGTGGCT
CCATCTACCGCCTTCGAGgtaagcccttcctgccttcctcccttcctccc
ttcctcccttgctcccttcctctctccctcccttccttcagtgcgttgcc
ataggcctgttcaaaccataccccttccctcttcccccctccctccctcc
gtccctccctccctccctccctccctcccttagATGCCCGCGCTGTGATA
GAGGAGCTCATCCCTCTGCACCATGATGGCACTCTCGCCTCGGGTCCCAA
CCAGCTGGAGGTCTGGGGCAATGACGCCCTGCACAAACAAGCGGCTGCTG
CTGCTGTTGATCATCATCATTATCTTCTTCATAGAGGTGTTTGTCGTACT
GCCGTTGGTGGTGGTGCCGGTGCTGCTGATAGAGGTGTTTCTCGCACCAC
TGTTGCTGGTGCTGCTGTTGCTATGCCCTCCTCCCCCTCCTCCTCCCCTC
CTTCCTCCTCCGCCACCATCAAAACGGCAAAGCAAGGGGCACATCCTCCT
CCCGCCCTCCCTCCCCCCTTCCCCTCCTCCGTCGCTCTCCCTTGTGTGCC
TGCCCGTCCTCCCCTGCTGCCTGTGTGGTGA
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protein sequence of NO26G00300.1

>NO26G00300.1-protein ID=NO26G00300.1-protein|Name=NO26G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MSSPPLHLVVFSKDRAFQCTALLLSLDLYMSPAPTSLTVIYKASSPFFLE
GYHELEEARRVGSRNNDCKSERNEGREIGRALEGGNKLTTSAAPSPVCLP
ARFVPEDALGGFASALAAVMEGWTEGGREGGRKDRKEGNEEEEEAYVMCE
GREGRKEREGGAGGGGGREGVGHPHQAAPRDFLLAYIGQGLACPPLLFHR
TLGTAGFLFERDETKNDDWHYPWDLCGSIYRLRDARAVIEELIPLHHDGT
LASGPNQLEVWGNDALHKQAAAAAVDHHHYLLHRGVCRTAVGGGAGAADR
GVSRTTVAGAAVAMPSSPSSSPPSSSATIKTAKQGAHPPPALPPPFPSSV
ALPCVPARPPLLPVW*
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Synonyms
Publications