NO26G00300.1, NO26G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00300.1
Unique NameNO26G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr26:98047..99527 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:98047..99527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00300.1 vs.
Match: EWM23066.1 (hypothetical protein Naga_101466g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 2.700e-19
Identity = 68/153 (44.44%), Postives = 88/153 (57.52%), Query Frame = 0 
Query:    4 PPLHLVVFSKDRAFQCTALLLSLDLYMSPAPTSLTVIYKASSPFFLEGYHELEEARRVGSRNNDCKSERNEGREIGRALEGGNKLTTSAAPSPVCLPARFVPEDALGGFASALAAVMEGWTEGGREGGRKDR----KEG----NEEEEEAYVM 149
            P LHL+ FSKDR+FQC  LL SLD Y+SP P SLTV+Y  SSP FL+GY +LE  R+ G       + + +    G      + L   +  S  C+P  F+ ED  GGF++ALA V+  W E  R+ GRKD+    +EG     E EEEA VM
Sbjct:   26 PSLHLLAFSKDRSFQCRTLLHSLDTYLSPPPASLTVLYTVSSPTFLKGYQDLERMRQRGDHPGGKAAHKEDEGVPGPTK---SSLDDGSEQSSTCIPTTFLHEDEAGGFSTALAMVLGQWRESHRK-GRKDKQRRGREGGAGEEEREEEACVM 174
The following BLAST results are available for this feature:
BLAST of NO26G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23066.12.700e-1944.44hypothetical protein Naga_101466g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00300NO26G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00300.1NO26G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00300.1.cds1NO26G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00300.1.cds2NO26G00300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00300.1.cds3NO26G00300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00300.1.cds4NO26G00300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00300.1 ID=NO26G00300.1|Name=NO26G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGTCATCACCGCCCCTCCACCTCGTCGTCTTTTCCAAAGACCGCGCCTT
CCAATGCACTGCCCTCCTTCTCTCCCTCGACCTGTACATGTCCCCTGCGC
CCACGAGTCTCACTGTCATCTACAAGGCGTCCTCCCCTTTTTTCCTGGAA
GGGTACCACGAGCTGGAGGAGGCCAGGAGGGTAGGAAGCCGCAATAACGA
TTGCAAGAGTGAAAGAAACGAAGGGAGAGAAATAGGGAGGGCATTGGAAG
GGGGAAACAAGCTCACCACTTCCGCTGCACCATCTCCTGTGTGCCTACCG
GCTAGGTTTGTGCCTGAGGACGCGTTGGGGGGGTTTGCCTCTGCCTTGGC
TGCTGTCATGGAGGGGTGGACAGAGGGAGGGAGGGAGGGCGGGAGGAAGG
ACAGGAAAGAGGGAAACGAGGAGGAAGAGGAGGCCTACGTGATGTGCGAG
GGAAGGGAGGGGAGGAAGGAGAGAGAGGGGGGGGCAGGAGGAGGAGGTGG
GAGAGAGGGTGTGGGCCATCCACACCAAGCTGCACCCAGGGATTTCCTAC
TCGCATACATTGGACAAGGCCTTGCATGCCCCCCCCTCCTCTTTCACCGT
ACCCTTGGCACGGCAGGGTTTCTCTTTGAGCGCGACGAGACAAAGAACGA
CGACTGGCATTACCCTTGGGACCTCTGTGGCTCCATCTACCGCCTTCGAG
ATGCCCGCGCTGTGATAGAGGAGCTCATCCCTCTGCACCATGATGGCACT
CTCGCCTCGGGTCCCAACCAGCTGGAGGTCTGGGGCAATGACGCCCTGCA
CAAACAAGCGGCTGCTGCTGCTGTTGATCATCATCATTATCTTCTTCATA
GAGGTGTTTGTCGTACTGCCGTTGGTGGTGGTGCCGGTGCTGCTGATAGA
GGTGTTTCTCGCACCACTGTTGCTGGTGCTGCTGTTGCTATGCCCTCCTC
CCCCTCCTCCTCCCCTCCTTCCTCCTCCGCCACCATCAAAACGGCAAAGC
AAGGGGCACATCCTCCTCCCGCCCTCCCTCCCCCCTTCCCCTCCTCCGTC
GCTCTCCCTTGTGTGCCTGCCCGTCCTCCCCTGCTGCCTGTGTGGTGA
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protein sequence of NO26G00300.1

>NO26G00300.1-protein ID=NO26G00300.1-protein|Name=NO26G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MSSPPLHLVVFSKDRAFQCTALLLSLDLYMSPAPTSLTVIYKASSPFFLE
GYHELEEARRVGSRNNDCKSERNEGREIGRALEGGNKLTTSAAPSPVCLP
ARFVPEDALGGFASALAAVMEGWTEGGREGGRKDRKEGNEEEEEAYVMCE
GREGRKEREGGAGGGGGREGVGHPHQAAPRDFLLAYIGQGLACPPLLFHR
TLGTAGFLFERDETKNDDWHYPWDLCGSIYRLRDARAVIEELIPLHHDGT
LASGPNQLEVWGNDALHKQAAAAAVDHHHYLLHRGVCRTAVGGGAGAADR
GVSRTTVAGAAVAMPSSPSSSPPSSSATIKTAKQGAHPPPALPPPFPSSV
ALPCVPARPPLLPVW*
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mRNA from alignment at chr26:98047..99527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00300.1 ID=NO26G00300.1|Name=NO26G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr26:98047..99527+ (Nannochloropsis oceanica)
ATGTCATCACCGCCCCTCCACCTCGTCGTCTTTTCCAAAGACCGCGCCTT
CCAATGCACTGCCCTCCTTCTCTCCCTCGACCTGTACATGTCCCCTGCGC
CCACGAGTCTCACTGTCATCTACAAGGCGTCCTCCCCTTTTTTCCTGGAA
GGGTACCACGAGCTGGAGGAGGCCAGGAGGGTAGGAAGCCGCAATAACGA
TTGCAAGAGTGAAAGAAACGAAGGGAGAGAAATAGGGAGGGCATTGGAAG
GGGGAAACAAGCTCACCACTTCCGCTGCACCATCTCCTGTGTGCCTACCG
GCTAGGTTTGTGCCTGAGGACGCGTTGGGGGGGTTTGCCTCTGCCTTGGC
TGCTGTCATGGAGGGGTGGACAGAGGGAGGGAGGGAGGGCGGGAGGAAGG
ACAGGAAAGAGGGAAACGAGGAGGAAGAGGAGGCCTACGTGATGTGGTTG
GTGGACGATTTCCTTTTCCATTCCCCCTTGGACACGACCCCTTTCCTCAC
CCTCCTTTCACCAAAGCGAGGGAAGGGAGGGGAGGAAGGAGAGAGAGGGG
GGGGCAGGAGGAGGAGGTGGGAGAGAGGGTGTGGGCCATCCACACCAAGC
TGCACCCAGGGATTTCCTACTCGCATACATTGGACAAGGTCAGGAAGAAA
GAAGGGAGGCGGGAGGGAAGGAGGGAGGGCGGGAGGGCGGGAGAAATGGA
GGGTGGGTTAAGTGACAAGAGGCAATAGTGCGGCTGGCATTCCTCCCACC
CTCTCACCCTCGCTCTCTTCCTACTCGCTCTCTCAGGCCTTGCATGCCCC
CCCCTCCTCTTTCACCGTACCCTTGGCACGGCAGGGTTTCTCTTTGAGCG
CGACGAGACAAAGAACGACGACTGGCATTACCCTTGGGACCTCTGTGGCT
CCATCTACCGCCTTCGAGGTAAGCCCTTCCTGCCTTCCTCCCTTCCTCCC
TTCCTCCCTTGCTCCCTTCCTCTCTCCCTCCCTTCCTTCAGTGCGTTGCC
ATAGGCCTGTTCAAACCATACCCCTTCCCTCTTCCCCCCTCCCTCCCTCC
GTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAGATGCCCGCGCTGTGATA
GAGGAGCTCATCCCTCTGCACCATGATGGCACTCTCGCCTCGGGTCCCAA
CCAGCTGGAGGTCTGGGGCAATGACGCCCTGCACAAACAAGCGGCTGCTG
CTGCTGTTGATCATCATCATTATCTTCTTCATAGAGGTGTTTGTCGTACT
GCCGTTGGTGGTGGTGCCGGTGCTGCTGATAGAGGTGTTTCTCGCACCAC
TGTTGCTGGTGCTGCTGTTGCTATGCCCTCCTCCCCCTCCTCCTCCCCTC
CTTCCTCCTCCGCCACCATCAAAACGGCAAAGCAAGGGGCACATCCTCCT
CCCGCCCTCCCTCCCCCCTTCCCCTCCTCCGTCGCTCTCCCTTGTGTGCC
TGCCCGTCCTCCCCTGCTGCCTGTGTGGTGA
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Coding sequence (CDS) from alignment at chr26:98047..99527+

>NO26G00300.1 ID=NO26G00300.1|Name=NO26G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr26:98047..99527+ (Nannochloropsis oceanica)
ATGTCATCACCGCCCCTCCACCTCGTCGTCTTTTCCAAAGACCGCGCCTT
CCAATGCACTGCCCTCCTTCTCTCCCTCGACCTGTACATGTCCCCTGCGC
CCACGAGTCTCACTGTCATCTACAAGGCGTCCTCCCCTTTTTTCCTGGAA
GGGTACCACGAGCTGGAGGAGGCCAGGAGGGTAGGAAGCCGCAATAACGA
TTGCAAGAGTGAAAGAAACGAAGGGAGAGAAATAGGGAGGGCATTGGAAG
GGGGAAACAAGCTCACCACTTCCGCTGCACCATCTCCTGTGTGCCTACCG
GCTAGGTTTGTGCCTGAGGACGCGTTGGGGGGGTTTGCCTCTGCCTTGGC
TGCTGTCATGGAGGGGTGGACAGAGGGAGGGAGGGAGGGCGGGAGGAAGG
ACAGGAAAGAGGGAAACGAGGAGGAAGAGGAGGCCTACGTGATGTGCGAG
GGAAGGGAGGGGAGGAAGGAGAGAGAGGGGGGGGCAGGAGGAGGAGGTGG
GAGAGAGGGTGTGGGCCATCCACACCAAGCTGCACCCAGGGATTTCCTAC
TCGCATACATTGGACAAGGCCTTGCATGCCCCCCCCTCCTCTTTCACCGT
ACCCTTGGCACGGCAGGGTTTCTCTTTGAGCGCGACGAGACAAAGAACGA
CGACTGGCATTACCCTTGGGACCTCTGTGGCTCCATCTACCGCCTTCGAG
ATGCCCGCGCTGTGATAGAGGAGCTCATCCCTCTGCACCATGATGGCACT
CTCGCCTCGGGTCCCAACCAGCTGGAGGTCTGGGGCAATGACGCCCTGCA
CAAACAAGCGGCTGCTGCTGCTGTTGATCATCATCATTATCTTCTTCATA
GAGGTGTTTGTCGTACTGCCGTTGGTGGTGGTGCCGGTGCTGCTGATAGA
GGTGTTTCTCGCACCACTGTTGCTGGTGCTGCTGTTGCTATGCCCTCCTC
CCCCTCCTCCTCCCCTCCTTCCTCCTCCGCCACCATCAAAACGGCAAAGC
AAGGGGCACATCCTCCTCCCGCCCTCCCTCCCCCCTTCCCCTCCTCCGTC
GCTCTCCCTTGTGTGCCTGCCCGTCCTCCCCTGCTGCCTGTGTGGTGA
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Synonyms
Publications