NO26G00280, NO26G00280 (gene) Nannochloropsis oceanica

Overview
NameNO26G00280
Unique NameNO26G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length889
Alignment locationchr26:95255..96143 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:95255..96143 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019721NADH-UbQ_OxRdtase_su21_N
Homology
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_007212284.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Prunus persica] >ONI09755.1 hypothetical protein PRUPE_4G007400 [Prunus persica])

HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P   TV  NF   +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTTVVGNFSTLDYFRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDNEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_008227446.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Prunus mume] >XP_008227447.1 PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Prunus mume])

HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P   TV  NF   +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTTVVGNFSTLDYFRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDSEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_008370990.1 (PREDICTED: uncharacterized protein LOC103434424 [Malus domestica])

HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P   TV  NF   +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTTVVGNFSILDYFRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_021831647.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Prunus avium])

HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P   TV  NF   +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTTVVGNFSTLDYFRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDNEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_009347995.1 (PREDICTED: uncharacterized protein LOC103939326 [Pyrus x bretschneideri] >XP_009374873.1 PREDICTED: uncharacterized protein LOC103963747 [Pyrus x bretschneideri] >XP_009344951.1 PREDICTED: uncharacterized protein LOC103936806 [Pyrus x bretschneideri])

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-11
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P   TV  NF   +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTTVVGNFSTLDYFRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_010252277.1 (PREDICTED: uncharacterized protein LOC104593899 [Nelumbo nucifera] >XP_010252278.1 PREDICTED: uncharacterized protein LOC104593899 [Nelumbo nucifera])

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-11
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P      ANF   +Y +++ +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVIDRNPPFTKTVANFNTLDYFRFITITGISVTVGYLSGIKPNIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDEEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: PON31339.1 (NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal [Parasponia andersonii])

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-11
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPVVD  P    V  NF   +Y +++ +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA+Y
Sbjct:   11 PEYPVVDRNPPFTKVVGNFSTLDYFRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDDEVASY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_009391399.1 (PREDICTED: uncharacterized protein LOC103977570 isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPVVD  P      ANF   +Y + L +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA Y
Sbjct:   11 PEYPVVDRNPPFTKTVANFNTLDYLRLLTITGVSVTVGYLSGIKPNVRGPSTVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVARY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_021622348.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Manihot esculenta] >OAY41156.1 hypothetical protein MANES_09G078600 [Manihot esculenta])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P    V  NF F +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PN+ EVA Y
Sbjct:   11 PEYPVIDRNPPFTKVVGNFNFLDYCRFSTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVAQY 98
[Close]
BLAST of NO26G00280 vs. NCBI_GenBank
Match: XP_018823891.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Juglans regia])

HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPV+D  P    V  NF F +Y ++  +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GR+ G+ PND EVA Y
Sbjct:   11 PEYPVLDRNPPFTKVVGNFNFLDYLRFTTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNDDEVARY 98
The following BLAST results are available for this feature:
BLAST of NO26G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_007212284.18.800e-1246.59NADH-ubiquinone oxidoreductase 20.9 kDa subunit [P... [more]
XP_008227446.18.800e-1246.59PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa... [more]
XP_008370990.18.800e-1246.59PREDICTED: uncharacterized protein LOC103434424 [M... [more]
XP_021831647.18.800e-1246.59NADH-ubiquinone oxidoreductase 20.9 kDa subunit [P... [more]
XP_009347995.11.500e-1146.59PREDICTED: uncharacterized protein LOC103939326 [P... [more]
XP_010252277.11.500e-1145.45PREDICTED: uncharacterized protein LOC104593899 [N... [more]
PON31339.11.500e-1146.59NADH-ubiquinone oxidoreductase, 21kDa subunit, N-t... [more]
XP_009391399.12.600e-1147.73PREDICTED: uncharacterized protein LOC103977570 is... [more]
XP_021622348.12.600e-1145.45NADH-ubiquinone oxidoreductase 20.9 kDa subunit [M... [more]
XP_018823891.12.600e-1145.45PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00280.1NO26G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00280.1NO26G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00280 ID=NO26G00280|Name=NO26G00280|organism=Nannochloropsis oceanica|type=gene|length=889bp
ATGCCTCCAAGGTACCCCGTCGTTGACCCTGCGCCCACGATGGACACGGT
CACGGCCAACTTTGGCTTTTCGGAGTACGGGAAGTGGTTGTGTGTGACGT
CCCTTGGGGCGACCCTTGGCTATGTTGGGGgtacgtggggaggatgggga
gggagggagggaaggagggagggagggaggcatggagggagaggacatgg
atgtgttgcggctgccgcagggtggtggccaggcatgacaggaagacgta
tgtgcgaacagaggtgtgaggtcggtgtgattgttaatttgaatggcgcg
atgtgtatgaaaatggggcatggtcattgcacgtctcacctttccctccc
ttccttccatccctccctcccactcatcctccttccatttccctcagGCA
AACCGTATAGAGGCCCTTCTGCGTTCACGTTTGCTTTGACTGGGTTTATT
GCAGGATACATGATAGCAGCGCAGTCTTCGTGGGGGCGACTGACAGgtag
gtaggaagggagggaaggagggaggtaggaagggaatgaaagagggggat
tagacgtgctatagtcaggccccattacgcgaggcatcgcgtaaggaggg
aatgagggaggacggtaggatagaagaatggaaaatgtgcggtgatggca
tgacgtgaaggcggaaaacagttcctcgtcagaaaacttctgaagctttc
atgtggccgacaggacggagtcctccctccctcactccctccctccctcc
ctccccagGCTACCTCCCAAATGATTACGAAGTGGCGGCTTATGGCATTA
AACCCCCCGGTGCCGGACCAGTCACTGCCCTATCTCTGGCACAAAAAAGT
GGGCGGCTGGCCACGCTGTGGGGAGGGAGGATGGAGTAG
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protein sequence of NO26G00280.1

>NO26G00280.1-protein ID=NO26G00280.1-protein|Name=NO26G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MPPRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGGKPYRGP
SAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAYGIKPPGAGPVTA
LSLAQKSGRLATLWGGRME*
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Synonyms
Publications