NO26G00280.1, NO26G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00280.1
Unique NameNO26G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr26:95255..96143 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:95255..96143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00280.1 vs.
Match: PON31339.1 (NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal [Parasponia andersonii])

HSP 1 Score: 78.6 bits (192), Expect = 1.500e-11
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:    3 PRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGG-KP-YRGPSAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAY 89
            P YPVVD  P    V  NF   +Y +++ +T +  T+GY+ G KP  RGPS  T  L G + G+M A Q+S GRL G+ PND EVA+Y
Sbjct:   11 PEYPVVDRNPPFTKVVGNFSTLDYFRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDDEVASY 98
The following BLAST results are available for this feature:
BLAST of NO26G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PON31339.11.500e-1146.59NADH-ubiquinone oxidoreductase, 21kDa subunit, N-t... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00280NO26G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00280.1NO26G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00280.1.cds1NO26G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00280.1.cds2NO26G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00280.1.cds3NO26G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00280.1 ID=NO26G00280.1|Name=NO26G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGCCTCCAAGGTACCCCGTCGTTGACCCTGCGCCCACGATGGACACGGT
CACGGCCAACTTTGGCTTTTCGGAGTACGGGAAGTGGTTGTGTGTGACGT
CCCTTGGGGCGACCCTTGGCTATGTTGGGGGCAAACCGTATAGAGGCCCT
TCTGCGTTCACGTTTGCTTTGACTGGGTTTATTGCAGGATACATGATAGC
AGCGCAGTCTTCGTGGGGGCGACTGACAGGCTACCTCCCAAATGATTACG
AAGTGGCGGCTTATGGCATTAAACCCCCCGGTGCCGGACCAGTCACTGCC
CTATCTCTGGCACAAAAAAGTGGGCGGCTGGCCACGCTGTGGGGAGGGAG
GATGGAGTAG
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protein sequence of NO26G00280.1

>NO26G00280.1-protein ID=NO26G00280.1-protein|Name=NO26G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MPPRYPVVDPAPTMDTVTANFGFSEYGKWLCVTSLGATLGYVGGKPYRGP
SAFTFALTGFIAGYMIAAQSSWGRLTGYLPNDYEVAAYGIKPPGAGPVTA
LSLAQKSGRLATLWGGRME*
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mRNA from alignment at chr26:95255..96143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00280.1 ID=NO26G00280.1|Name=NO26G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=889bp|location=Sequence derived from alignment at chr26:95255..96143+ (Nannochloropsis oceanica)
ATGCCTCCAAGGTACCCCGTCGTTGACCCTGCGCCCACGATGGACACGGT
CACGGCCAACTTTGGCTTTTCGGAGTACGGGAAGTGGTTGTGTGTGACGT
CCCTTGGGGCGACCCTTGGCTATGTTGGGGGTACGTGGGGAGGATGGGGA
GGGAGGGAGGGAAGGAGGGAGGGAGGGAGGCATGGAGGGAGAGGACATGG
ATGTGTTGCGGCTGCCGCAGGGTGGTGGCCAGGCATGACAGGAAGACGTA
TGTGCGAACAGAGGTGTGAGGTCGGTGTGATTGTTAATTTGAATGGCGCG
ATGTGTATGAAAATGGGGCATGGTCATTGCACGTCTCACCTTTCCCTCCC
TTCCTTCCATCCCTCCCTCCCACTCATCCTCCTTCCATTTCCCTCAGGCA
AACCGTATAGAGGCCCTTCTGCGTTCACGTTTGCTTTGACTGGGTTTATT
GCAGGATACATGATAGCAGCGCAGTCTTCGTGGGGGCGACTGACAGGTAG
GTAGGAAGGGAGGGAAGGAGGGAGGTAGGAAGGGAATGAAAGAGGGGGAT
TAGACGTGCTATAGTCAGGCCCCATTACGCGAGGCATCGCGTAAGGAGGG
AATGAGGGAGGACGGTAGGATAGAAGAATGGAAAATGTGCGGTGATGGCA
TGACGTGAAGGCGGAAAACAGTTCCTCGTCAGAAAACTTCTGAAGCTTTC
ATGTGGCCGACAGGACGGAGTCCTCCCTCCCTCACTCCCTCCCTCCCTCC
CTCCCCAGGCTACCTCCCAAATGATTACGAAGTGGCGGCTTATGGCATTA
AACCCCCCGGTGCCGGACCAGTCACTGCCCTATCTCTGGCACAAAAAAGT
GGGCGGCTGGCCACGCTGTGGGGAGGGAGGATGGAGTAG
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Coding sequence (CDS) from alignment at chr26:95255..96143+

>NO26G00280.1 ID=NO26G00280.1|Name=NO26G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at chr26:95255..96143+ (Nannochloropsis oceanica)
ATGCCTCCAAGGTACCCCGTCGTTGACCCTGCGCCCACGATGGACACGGT
CACGGCCAACTTTGGCTTTTCGGAGTACGGGAAGTGGTTGTGTGTGACGT
CCCTTGGGGCGACCCTTGGCTATGTTGGGGGCAAACCGTATAGAGGCCCT
TCTGCGTTCACGTTTGCTTTGACTGGGTTTATTGCAGGATACATGATAGC
AGCGCAGTCTTCGTGGGGGCGACTGACAGGCTACCTCCCAAATGATTACG
AAGTGGCGGCTTATGGCATTAAACCCCCCGGTGCCGGACCAGTCACTGCC
CTATCTCTGGCACAAAAAAGTGGGCGGCTGGCCACGCTGTGGGGAGGGAG
GATGGAGTAG
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Synonyms
Publications