NO26G00220, NO26G00220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_009530258.1 (hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae] >EGZ12829.1 hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae]) HSP 1 Score: 99.0 bits (245), Expect = 1.300e-17 Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 0 Query: 2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 +E+ R DG+I++IAE + DETG +T ARN Q+D L + LVVVVRN+ ++ G MRL V +WGKLS +PDGI+STP VN + + S VEYEL+ Sbjct: 42 VEKKRYDGTISRIAEAVMADETGCVTFTARNDQIDML-----------KEELVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGIASTPXXXXSVNTDNNISAVEYELV 139
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_012202348.1 (hypothetical protein SPRG_07680 [Saprolegnia parasitica CBS 223.65] >KDO26967.1 hypothetical protein SPRG_07680 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 99.0 bits (245), Expect = 1.300e-17 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0 Query: 3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 E+ + DG+ ++IAEV +GDETGT+ + A N Q+D + G VVVRNA V + +G +RL ++KWGKL+ +PDGI STP AP +V+ E + S +EYEL+ Sbjct: 37 EKVQGDGTTSRIAEVLIGDETGTVIVSAWNEQIDLFIVGRN-----------VVVRNADVVVRRGFVRLRISKWGKLASHPDGIKSTPKAPGKVHTENNMSAIEYELV 133
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_008619949.1 (hypothetical protein SDRG_15551 [Saprolegnia diclina VS20] >EQC26611.1 hypothetical protein SDRG_15551 [Saprolegnia diclina VS20]) HSP 1 Score: 98.6 bits (244), Expect = 1.600e-17 Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0 Query: 3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 E+ + DG+ ++IAEV +GDETGTI + A N Q+D + G VVVRNA V +++G RL V+KWGKL+ +PDGI STP P +V E + S +EYEL+ Sbjct: 37 EKVQADGTTSRIAEVLIGDETGTIIVSAWNEQIDLFIVGRN-----------VVVRNADVGVHRGFARLRVSKWGKLASHPDGIKSTPKVPGKVLTENNMSAIEYELV 133
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OQS07585.1 (hypothetical protein THRCLA_20111 [Thraustotheca clavata]) HSP 1 Score: 98.2 bits (243), Expect = 2.100e-17 Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 ++E+ +DGS+ +IAE+ VGDETGT+ L ARN Q+D G +V+RNA A+Y+G MRL V WGKLS +PDG+ STP P + + + S VEYEL+ Sbjct: 33 IVEKVHLDGSVARIAEILVGDETGTVVLTARNEQIDRAQVG-----------KYLVLRNAEAAVYRGFMRLRVTVWGKLSLHPDGVKSTPKVPKSIADNNNMSLVEYELV 131
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OEU20541.1 (hypothetical protein FRACYDRAFT_259571 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 95.5 bits (236), Expect = 1.400e-16 Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 +++++RVD S ++AEV +GDETGT++LRAR+ Q+D L + KP VV+RN + +Y+G H+RL V KWGKLS YPD ++STP P +N + + S ++ L+ Sbjct: 183 VVDKSRVDRSRVRLAEVEIGDETGTVSLRARDDQIDLL------ERVSKCKPGAVVLRNCTLELYQGKHIRLAVTKWGKLSEYPDNVASTPGPPPTMNLDRNYSLIDLSLV 287
BLAST of NO26G00220 vs. NCBI_GenBank
Match: EJK57349.1 (hypothetical protein THAOC_22618 [Thalassiosira oceanica]) HSP 1 Score: 93.6 bits (231), Expect = 5.300e-16 Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 ++++ RVDGS +AEV VGDETG+++LRAR+ Q+D LR+ D +V+RNA + +Y+G ++RL V+KWGK+ YPDGI STP P N + S V+ L+ Sbjct: 106 VVDKLRVDGSRVLVAEVEVGDETGSVSLRARDDQIDL----LRKVSHDNG---AIVLRNAQIELYQGRYLRLAVSKWGKMEAYPDGIESTPDPPLTRNRSLNYSLVDLNLV 209
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OQR87757.1 (hypothetical protein ACHHYP_08081 [Achlya hypogyna]) HSP 1 Score: 91.7 bits (226), Expect = 2.000e-15 Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 0 Query: 8 DGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELIHR 113 +GS+ +AEV VGD+TG I L AR+ Q+D +G +V+RNA VA+++G MRL V KWGK++ +PDGI+STP AP V + S VEYEL+ R Sbjct: 47 NGSVKWLAEVVVGDDTGAIILSARDEQIDIAKKGRN-----------LVIRNAEVAVFRGFMRLRVTKWGKVALHPDGIASTPKAPRRVAASNNVSLVEYELVAR 140
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_002184109.1 (DNA binding protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44287.1 DNA binding protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 91.3 bits (225), Expect = 2.600e-15 Identity = 47/111 (42.34%), Postives = 76/111 (68.47%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111 ++++ RVDGS ++AEV VGDETGT++LRAR+ Q+D GL E + + VV+RN + +Y+G H+RL + KWGKL+ +PD I+STP P ++N + + S ++ ++ Sbjct: 104 VVDKYRVDGSRVRLAEVEVGDETGTVSLRARDEQID----GLTEVSQ---RAGAVVLRNCTLELYQGKHIRLAITKWGKLNSFPDQIASTPPPPSKMNHDRNFSLIDLSMV 207
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_002295973.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64690.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.0 bits (219), Expect = 1.300e-14 Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGH-MRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVE 107 ++++ RVD + +AEV+VGD TG+I+LRAR+ Q+D L Q +E VV+RN + +Y+G +RL+V KWGK++ YPDGI STP P +N+E + S V+ Sbjct: 170 VVDKLRVDSTRVLVAEVSVGDSTGSISLRARDDQIDLLKQVSKEGG-------AVVLRNCTMELYQGRFLRLVVGKWGKINVYPDGIESTPKPPTSMNQELNFSLVD 269
BLAST of NO26G00220 vs. NCBI_GenBank
Match: GAX24717.1 (replication factor A1 [Fistulifera solaris]) HSP 1 Score: 88.2 bits (217), Expect = 2.200e-14 Identity = 46/107 (42.99%), Postives = 74/107 (69.16%), Query Frame = 0 Query: 1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVE 107 ++++ RVDGS ++AEV VGDETG ++LRAR+ Q+D L +E + VV+RN+ + +++G H+RL V KWGK+S YPD I+STP+ P ++N + + S ++ Sbjct: 104 VVDKNRVDGSRVRLAEVLVGDETGCVSLRARDEQIDIL-------KEVSQRSGAVVLRNSTLELFQGRHIRLAVTKWGKMSVYPDQIASTPAPPQKMNMDRNFSMID 203 The following BLAST results are available for this feature:
BLAST of NO26G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G00220 ID=NO26G00220|Name=NO26G00220|organism=Nannochloropsis oceanica|type=gene|length=1169bpback to top protein sequence of NO26G00220.1 >NO26G00220.1-protein ID=NO26G00220.1-protein|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bpback to top Synonyms
Publications
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