NO26G00220, NO26G00220 (gene) Nannochloropsis oceanica

Overview
NameNO26G00220
Unique NameNO26G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr26:73854..75022 +

Link to JBrowse

Properties
Property NameValue
DescriptionNucleic acid-binding, OB-fold-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:73854..75022 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_009530258.1 (hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae] >EGZ12829.1 hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae])

HSP 1 Score: 99.0 bits (245), Expect = 1.300e-17
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +E+ R DG+I++IAE  + DETG +T  ARN Q+D L            + LVVVVRN+   ++ G MRL V +WGKLS +PDGI+STP     VN + + S VEYEL+
Sbjct:   42 VEKKRYDGTISRIAEAVMADETGCVTFTARNDQIDML-----------KEELVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGIASTPXXXXSVNTDNNISAVEYELV 139          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_012202348.1 (hypothetical protein SPRG_07680 [Saprolegnia parasitica CBS 223.65] >KDO26967.1 hypothetical protein SPRG_07680 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 99.0 bits (245), Expect = 1.300e-17
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            E+ + DG+ ++IAEV +GDETGT+ + A N Q+D  + G             VVVRNA V + +G +RL ++KWGKL+ +PDGI STP AP +V+ E + S +EYEL+
Sbjct:   37 EKVQGDGTTSRIAEVLIGDETGTVIVSAWNEQIDLFIVGRN-----------VVVRNADVVVRRGFVRLRISKWGKLASHPDGIKSTPKAPGKVHTENNMSAIEYELV 133          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_008619949.1 (hypothetical protein SDRG_15551 [Saprolegnia diclina VS20] >EQC26611.1 hypothetical protein SDRG_15551 [Saprolegnia diclina VS20])

HSP 1 Score: 98.6 bits (244), Expect = 1.600e-17
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            E+ + DG+ ++IAEV +GDETGTI + A N Q+D  + G             VVVRNA V +++G  RL V+KWGKL+ +PDGI STP  P +V  E + S +EYEL+
Sbjct:   37 EKVQADGTTSRIAEVLIGDETGTIIVSAWNEQIDLFIVGRN-----------VVVRNADVGVHRGFARLRVSKWGKLASHPDGIKSTPKVPGKVLTENNMSAIEYELV 133          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OQS07585.1 (hypothetical protein THRCLA_20111 [Thraustotheca clavata])

HSP 1 Score: 98.2 bits (243), Expect = 2.100e-17
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            ++E+  +DGS+ +IAE+ VGDETGT+ L ARN Q+D    G             +V+RNA  A+Y+G MRL V  WGKLS +PDG+ STP  P  + +  + S VEYEL+
Sbjct:   33 IVEKVHLDGSVARIAEILVGDETGTVVLTARNEQIDRAQVG-----------KYLVLRNAEAAVYRGFMRLRVTVWGKLSLHPDGVKSTPKVPKSIADNNNMSLVEYELV 131          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OEU20541.1 (hypothetical protein FRACYDRAFT_259571 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.5 bits (236), Expect = 1.400e-16
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +++++RVD S  ++AEV +GDETGT++LRAR+ Q+D L          + KP  VV+RN  + +Y+G H+RL V KWGKLS YPD ++STP  P  +N + + S ++  L+
Sbjct:  183 VVDKSRVDRSRVRLAEVEIGDETGTVSLRARDDQIDLL------ERVSKCKPGAVVLRNCTLELYQGKHIRLAVTKWGKLSEYPDNVASTPGPPPTMNLDRNYSLIDLSLV 287          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: EJK57349.1 (hypothetical protein THAOC_22618 [Thalassiosira oceanica])

HSP 1 Score: 93.6 bits (231), Expect = 5.300e-16
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            ++++ RVDGS   +AEV VGDETG+++LRAR+ Q+D     LR+   D      +V+RNA + +Y+G ++RL V+KWGK+  YPDGI STP  P   N   + S V+  L+
Sbjct:  106 VVDKLRVDGSRVLVAEVEVGDETGSVSLRARDDQIDL----LRKVSHDNG---AIVLRNAQIELYQGRYLRLAVSKWGKMEAYPDGIESTPDPPLTRNRSLNYSLVDLNLV 209          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: OQR87757.1 (hypothetical protein ACHHYP_08081 [Achlya hypogyna])

HSP 1 Score: 91.7 bits (226), Expect = 2.000e-15
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 0
Query:    8 DGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELIHR 113
            +GS+  +AEV VGD+TG I L AR+ Q+D   +G             +V+RNA VA+++G MRL V KWGK++ +PDGI+STP AP  V    + S VEYEL+ R
Sbjct:   47 NGSVKWLAEVVVGDDTGAIILSARDEQIDIAKKGRN-----------LVIRNAEVAVFRGFMRLRVTKWGKVALHPDGIASTPKAPRRVAASNNVSLVEYELVAR 140          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_002184109.1 (DNA binding protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44287.1 DNA binding protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.3 bits (225), Expect = 2.600e-15
Identity = 47/111 (42.34%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            ++++ RVDGS  ++AEV VGDETGT++LRAR+ Q+D    GL E  +   +   VV+RN  + +Y+G H+RL + KWGKL+ +PD I+STP  P ++N + + S ++  ++
Sbjct:  104 VVDKYRVDGSRVRLAEVEVGDETGTVSLRARDEQID----GLTEVSQ---RAGAVVLRNCTLELYQGKHIRLAITKWGKLNSFPDQIASTPPPPSKMNHDRNFSLIDLSMV 207          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_002295973.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64690.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-14
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGH-MRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVE 107
            ++++ RVD +   +AEV+VGD TG+I+LRAR+ Q+D L Q  +E          VV+RN  + +Y+G  +RL+V KWGK++ YPDGI STP  P  +N+E + S V+
Sbjct:  170 VVDKLRVDSTRVLVAEVSVGDSTGSISLRARDDQIDLLKQVSKEGG-------AVVLRNCTMELYQGRFLRLVVGKWGKINVYPDGIESTPKPPTSMNQELNFSLVD 269          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: GAX24717.1 (replication factor A1 [Fistulifera solaris])

HSP 1 Score: 88.2 bits (217), Expect = 2.200e-14
Identity = 46/107 (42.99%), Postives = 74/107 (69.16%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKG-HMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVE 107
            ++++ RVDGS  ++AEV VGDETG ++LRAR+ Q+D L       +E   +   VV+RN+ + +++G H+RL V KWGK+S YPD I+STP+ P ++N + + S ++
Sbjct:  104 VVDKNRVDGSRVRLAEVLVGDETGCVSLRARDEQIDIL-------KEVSQRSGAVVLRNSTLELFQGRHIRLAVTKWGKMSVYPDQIASTPAPPQKMNMDRNFSMID 203          
The following BLAST results are available for this feature:
BLAST of NO26G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009530258.11.300e-1746.79hypothetical protein PHYSODRAFT_546681 [Phytophtho... [more]
XP_012202348.11.300e-1745.37hypothetical protein SPRG_07680 [Saprolegnia paras... [more]
XP_008619949.11.600e-1746.30hypothetical protein SDRG_15551 [Saprolegnia dicli... [more]
OQS07585.12.100e-1745.45hypothetical protein THRCLA_20111 [Thraustotheca c... [more]
OEU20541.11.400e-1643.24hypothetical protein FRACYDRAFT_259571 [Fragilario... [more]
EJK57349.15.300e-1644.14hypothetical protein THAOC_22618 [Thalassiosira oc... [more]
OQR87757.12.000e-1546.67hypothetical protein ACHHYP_08081 [Achlya hypogyna... [more]
XP_002184109.12.600e-1542.34DNA binding protein [Phaeodactylum tricornutum CCA... [more]
XP_002295973.11.300e-1443.93predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX24717.12.200e-1442.99replication factor A1 [Fistulifera solaris][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL051nonsL051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006113NSK006113Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00220.1NO26G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612143gene_10610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100847g3gene7392Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00220.1NO26G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00220 ID=NO26G00220|Name=NO26G00220|organism=Nannochloropsis oceanica|type=gene|length=1169bp
GTATAATGTCGCTCCCTCTTTTCCTCTCTACCCCTAGGTCGATCTTCTCA
CCCCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAG
ACGATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAgtgaggatg
gtgggaggagaggggggagagcaaaagggtgggaggtggaatagacattc
tctgggcaacattctacatattcaagccccatctcatgaagtcacacagc
caatccccaaattatatatcctctctcttgtatttcctacacagAATTGC
TGAGGTCACCGTTGGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGA
ACGGTCAGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGAT
GAAACAAAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTA
CAAGGGCCATATGCGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGgt
attttcctctccctccatcttcctcttccgcagtccccccttttccttcc
tccttccctacttccctccttgaatgaactctcacatctctcctttaaat
gaccgactcgcttatctagaataagtaagaagagtgcagatctgaagatt
aagtggcattacacgtcccttttgtccccacctcgctccctttcctctct
ttcgccctagATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTC
GAGGTGAACGAGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCA
TCGCGGACCAGAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGG
AGGAGATAGGGAATGAAGAGGAAATGGCGGAAGAGATTTGAGCACGCCTA
GAGGTAGGGTGCAAGGAGGATGGGAGTGAATGAGGAAGACGCATGCTCTC
TTGCCAGCGTGAGATAACTTAGGCGAAAGCAGAGAGCTTAATAATCGAAA
ACCCCAGCCCATACACATTAAAAAAAGTCGTTTACACATATAAGAAACAC
CGGCTCAGGGAAAACTTTACGGGTTGGAAAAAAGGCTGTGGAGCCGCAGG
AAATCAACGGAGGGATTGATGGCGGCCGAGCGAGCAGCACCTGGACACTA
AAAAGACTTAAAATCAAAA
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protein sequence of NO26G00220.1

>NO26G00220.1-protein ID=NO26G00220.1-protein|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDET
KPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEET
DKSGVEYELIHRGPEGVGEEEEEDNEEEEIGNEEEMAEEI*
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Synonyms
Publications