NO26G00220.1, NO26G00220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00220.1
Unique NameNO26G00220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr26:73854..75022 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:73854..75022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00220.1 vs.
Match: EWM23061.1 (Nucleic acid-binding, OB-fold-like protein [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 9.600e-34
Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 0 
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELIHRGPEGVGEEEEEDNEEEE 130
            E+ARVDGS TKIAE+ VGDETG ITLRARN QV+F ++ +++ EE+E KP V+V+RNAGV+MYKGHMRLIVNKWGK+S YPD ++STP  P +V    DKS VEYEL+ +     G E EE+ E  E
Sbjct:   62 EKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTE 188
The following BLAST results are available for this feature:
BLAST of NO26G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23061.19.600e-3461.42Nucleic acid-binding, OB-fold-like protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00220NO26G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00220.1NO26G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00220.1.cds1NO26G00220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00220.1.cds2NO26G00220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00220.1.cds3NO26G00220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00220.1 ID=NO26G00220.1|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
GTATAATGTCGCTCCCTCTTTTCCTCTCTACCCCTAGGTCGATCTTCTCA
CCCCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAG
ACGATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAAATTGCTGA
GGTCACCGTTGGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACG
GTCAGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAA
ACAAAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAA
GGGCCATATGCGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGATACC
CAGACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACGAGGAG
ACCGACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCAGAGGG
GGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGGGAATG
AAGAGGAAATGGCGGAAGAGATTTGAGCACGCCTAGAGGTAGGGTGCAAG
GAGGATGGGAGTGAATGAGGAAGACGCATGCTCTCTTGCCAGCGTGAGAT
AACTTAGGCGAAAGCAGAGAGCTTAATAATCGAAAACCCCAGCCCATACA
CATTAAAAAAAGTCGTTTACACATATAAGAAACACCGGCTCAGGGAAAAC
TTTACGGGTTGGAAAAAAGGCTGTGGAGCCGCAGGAAATCAACGGAGGGA
TTGATGGCGGCCGAGCGAGCAGCACCTGGACACTAAAAAGACTTAAAATC
AAAA
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protein sequence of NO26G00220.1

>NO26G00220.1-protein ID=NO26G00220.1-protein|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDET
KPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEET
DKSGVEYELIHRGPEGVGEEEEEDNEEEEIGNEEEMAEEI*
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mRNA from alignment at chr26:73854..75022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00220.1 ID=NO26G00220.1|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1169bp|location=Sequence derived from alignment at chr26:73854..75022+ (Nannochloropsis oceanica)
GTATAATGTCGCTCCCTCTTTTCCTCTCTACCCCTAGGTCGATCTTCTCA
CCCCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAG
ACGATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAGTGAGGATG
GTGGGAGGAGAGGGGGGAGAGCAAAAGGGTGGGAGGTGGAATAGACATTC
TCTGGGCAACATTCTACATATTCAAGCCCCATCTCATGAAGTCACACAGC
CAATCCCCAAATTATATATCCTCTCTCTTGTATTTCCTACACAGAATTGC
TGAGGTCACCGTTGGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGA
ACGGTCAGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGAT
GAAACAAAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTA
CAAGGGCCATATGCGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGGT
ATTTTCCTCTCCCTCCATCTTCCTCTTCCGCAGTCCCCCCTTTTCCTTCC
TCCTTCCCTACTTCCCTCCTTGAATGAACTCTCACATCTCTCCTTTAAAT
GACCGACTCGCTTATCTAGAATAAGTAAGAAGAGTGCAGATCTGAAGATT
AAGTGGCATTACACGTCCCTTTTGTCCCCACCTCGCTCCCTTTCCTCTCT
TTCGCCCTAGATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTC
GAGGTGAACGAGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCA
TCGCGGACCAGAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGG
AGGAGATAGGGAATGAAGAGGAAATGGCGGAAGAGATTTGAGCACGCCTA
GAGGTAGGGTGCAAGGAGGATGGGAGTGAATGAGGAAGACGCATGCTCTC
TTGCCAGCGTGAGATAACTTAGGCGAAAGCAGAGAGCTTAATAATCGAAA
ACCCCAGCCCATACACATTAAAAAAAGTCGTTTACACATATAAGAAACAC
CGGCTCAGGGAAAACTTTACGGGTTGGAAAAAAGGCTGTGGAGCCGCAGG
AAATCAACGGAGGGATTGATGGCGGCCGAGCGAGCAGCACCTGGACACTA
AAAAGACTTAAAATCAAAA
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Coding sequence (CDS) from alignment at chr26:73854..75022+

>NO26G00220.1 ID=NO26G00220.1|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr26:73854..75022+ (Nannochloropsis oceanica)
ATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAAATTGCTGAGGT
CACCGTTGGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGAACGGTC
AGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGATGAAACA
AAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTACAAGGG
CCATATGCGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGATACCCAG
ACGGGATCTCCTCTACACCCTCTGCCCCCTTCGAGGTGAACGAGGAGACC
GACAAGTCAGGTGTTGAGTACGAATTGATTCATCGCGGACCAGAGGGGGT
AGGGGAAGAAGAAGAAGAAGATAACGAGGAGGAGGAGATAGGGAATGAAG
AGGAAATGGCGGAAGAGATTTGA
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Synonyms
Publications