NO26G00220, NO26G00220 (gene) Nannochloropsis oceanica

Overview
NameNO26G00220
Unique NameNO26G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr26:73854..75022 +

Link to JBrowse

Properties
Property NameValue
DescriptionNucleic acid-binding, OB-fold-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:73854..75022 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
BLAST of NO26G00220 vs. NCBI_GenBank
Match: EWM23061.1 (Nucleic acid-binding, OB-fold-like protein [Nannochloropsis gaditana])

HSP 1 Score: 137.9 bits (346), Expect = 2.400e-29
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELIHR 113
            E+ARVDGS TKIAE+ VGDETG ITLRARN QV+F ++             V+V+RNAGV+MYKGHMRLIVNKWGK+S YPD ++STP  P +V    DKS VEYEL+ +
Sbjct:   62 EKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKXXXXXXXXXXXXXVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQ 171          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_008876518.1 (hypothetical protein H310_11573 [Aphanomyces invadans] >ETV94927.1 hypothetical protein H310_11573 [Aphanomyces invadans])

HSP 1 Score: 105.5 bits (262), Expect = 1.300e-19
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            E+ R+DGSI +I E TVGDETGT+ L ARN Q+  +  G            V+V+RNA   +Y G +RL V +WGK++ +PDGI+STP AP  VN   + SG+EYEL+
Sbjct:   42 EKTRIDGSIVRIVEATVGDETGTVVLNARNEQIKLVEVG-----------RVLVIRNASADVYNGFLRLNVTQWGKIAPHPDGIASTPHAPQSVNTSNNVSGIEYELV 138          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_002900136.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY60340.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 105.1 bits (261), Expect = 1.800e-19
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 0
Query:    2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +E+ R DG+I++IAE  + DETG +TL ARN Q+D L +GL            VVVRN+   ++ G MRL V +WGKLS +PDG++STP AP +VN +++ S VEYEL+
Sbjct:   42 VEKKRYDGTISRIAEAVLADETGCVTLTARNDQIDMLKEGLD-----------VVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPAPPKVNTDSNISAVEYELV 139          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_009830915.1 (hypothetical protein H257_07175 [Aphanomyces astaci] >ETV79979.1 hypothetical protein H257_07175 [Aphanomyces astaci])

HSP 1 Score: 104.8 bits (260), Expect = 2.300e-19
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            E+ R DGS+ +I E TVGDETGT+ L ARNGQ+  L  G            V+V+RNA   +Y G +RL V +WGK++ +PDGI+STP+AP  +N   + S VEYEL+
Sbjct:   42 EKPRYDGSVVRIVEATVGDETGTVVLSARNGQIQLLDVG-----------RVLVIRNANADVYNGFLRLNVTQWGKIAPHPDGIASTPNAPSSINTVNNISSVEYELV 138          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_024582713.1 (RFA1, RPA1, rpa [Plasmopara halstedii] >CEG46344.1 RFA1, RPA1, rpa [Plasmopara halstedii])

HSP 1 Score: 103.6 bits (257), Expect = 5.100e-19
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +E+ R DGS+++IAEV + DETG +T  ARN Q+D L +G           LVVV+RN+   +Y G MRL V  WGKLS +PDGI STP  P  +N + + S +EYEL+
Sbjct:   42 VEKKRYDGSVSRIAEVVLADETGCVTFTARNDQIDMLKEG-----------LVVVLRNSNADIYNGFMRLNVTLWGKLSLHPDGIESTPPPPPSINTDNNISAIEYELV 139          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: GAX99860.1 (Hypothetical protein PINS_007728 [Pythium insidiosum])

HSP 1 Score: 102.4 bits (254), Expect = 1.100e-18
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 0
Query:    3 ERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            E+ R DG+ T++AEV +GDETG +T  ARN Q++ L         D T    VV+RN+   ++ G +RL VN+WGK+SR+PDG++STP AP  V ++ D S VEYEL+
Sbjct:  712 EKKRFDGTSTRLAEVVLGDETGVVTFTARNDQIEAL-------PVDTT----VVIRNSSADIFNGFIRLNVNQWGKISRHPDGVASTPEAPSSVKQDNDISSVEYELV 808          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: CCA17796.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 102.1 bits (253), Expect = 1.500e-18
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 0
Query:    1 MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            ++ + R DG+  ++AE  VGDETG +TL ARN Q+D L +G             VV+RN    +Y G++RL V +WGK++ YPDG+ STP+ P E+N E D S +EYEL+
Sbjct:   40 LVAKKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSLKEGGD-----------VVIRNCNADVYNGYLRLNVTRWGKITPYPDGVDSTPNPPTEINMENDFSAIEYELV 138          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: XP_008899500.1 (hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >ETI55026.1 hypothetical protein F443_02260 [Phytophthora parasitica P1569] >ETK94853.1 hypothetical protein L915_02168 [Phytophthora parasitica] >ETL48246.1 hypothetical protein L916_02131 [Phytophthora parasitica] >ETM01347.1 hypothetical protein L917_02059 [Phytophthora parasitica] >ETM54534.1 hypothetical protein L914_02152 [Phytophthora parasitica] >ETN14829.1 hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >ETO83765.1 hypothetical protein F444_02265 [Phytophthora parasitica P1976] >ETP24828.1 hypothetical protein F441_02235 [Phytophthora parasitica CJ01A1] >ETP52829.1 hypothetical protein F442_02215 [Phytophthora parasitica P10297] >KUF65048.1 hypothetical protein AM587_10008382 [Phytophthora nicotianae])

HSP 1 Score: 100.5 bits (249), Expect = 4.300e-18
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +E+ R DG+I++IAE  + DETG +T  ARN Q+D L +G           LVVVVRN+   ++ G MRL V +WGKLS +PDG++STP     +N + + S VEYEL+
Sbjct:   42 VEKKRYDGTISRIAEAVLADETGCVTFTARNDQIDMLKEG-----------LVVVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPXXXXSINTDNNISAVEYELV 139          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: CCI42363.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 99.4 bits (246), Expect = 9.600e-18
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0
Query:    4 RARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            + R DG+  ++AE  VGDETG +TL ARN Q+D L +G             +V+RN    +Y G++RL V +WGK++ YPDG++STP  P E+  E D S +EYEL+
Sbjct:  563 KKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSLKEGSD-----------IVIRNCNADVYNGYLRLNVTRWGKITPYPDGVASTPKPPTEIKMENDFSAIEYELV 658          
BLAST of NO26G00220 vs. NCBI_GenBank
Match: POM60471.1 (hypothetical protein PHPALM_30668 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 99.4 bits (246), Expect = 9.600e-18
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = 0
Query:    2 LERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDETKPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEETDKSGVEYELI 111
            +E+ R DG+I++IAE  + DETG +T  ARN Q+D L +G           LVVVVRN+   ++ G MRL V +WGKLS +PDG++STP     VN + + S VEYE +
Sbjct:   42 VEKKRYDGTISRIAEAVLADETGCVTFTARNDQIDMLTEG-----------LVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGVASTPXXXXSVNTDNNISAVEYEQV 139          
The following BLAST results are available for this feature:
BLAST of NO26G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23061.12.400e-2960.91Nucleic acid-binding, OB-fold-like protein [Nannoc... [more]
XP_008876518.11.300e-1948.15hypothetical protein H310_11573 [Aphanomyces invad... [more]
XP_002900136.11.800e-1948.62conserved hypothetical protein [Phytophthora infes... [more]
XP_009830915.12.300e-1948.15hypothetical protein H257_07175 [Aphanomyces astac... [more]
XP_024582713.15.100e-1947.71RFA1, RPA1, rpa [Plasmopara halstedii] >CEG46344.1... [more]
GAX99860.11.100e-1847.22Hypothetical protein PINS_007728 [Pythium insidios... [more]
CCA17796.11.500e-1844.55conserved hypothetical protein [Albugo laibachii N... [more]
XP_008899500.14.300e-1845.87hypothetical protein PPTG_07086 [Phytophthora para... [more]
CCI42363.19.600e-1843.93unnamed protein product [Albugo candida][more]
POM60471.19.600e-1845.87hypothetical protein PHPALM_30668 [Phytophthora pa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL051nonsL051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006113NSK006113Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00220.1NO26G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612143gene_10610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100847g3gene7392Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00220.1NO26G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00220 ID=NO26G00220|Name=NO26G00220|organism=Nannochloropsis oceanica|type=gene|length=1169bp
GTATAATGTCGCTCCCTCTTTTCCTCTCTACCCCTAGGTCGATCTTCTCA
CCCCAGCGAGCCTCGGTCACAACCTGGTGCTGCGGGTCCTGCGCATCAAG
ACGATGCTGGAACGGGCAAGGGTCGATGGAAGCATAACGAAgtgaggatg
gtgggaggagaggggggagagcaaaagggtgggaggtggaatagacattc
tctgggcaacattctacatattcaagccccatctcatgaagtcacacagc
caatccccaaattatatatcctctctcttgtatttcctacacagAATTGC
TGAGGTCACCGTTGGGGACGAAACCGGCACCATTACTTTGCGCGCCCGGA
ACGGTCAGGTGGATTTCCTTGTACAGGGCTTGAGGGAAACGGAAGAGGAT
GAAACAAAGCCTCTCGTGGTGGTGGTGCGTAATGCGGGCGTGGCCATGTA
CAAGGGCCATATGCGCCTGATTGTCAACAAGTGGGGCAAGCTGTCCAGgt
attttcctctccctccatcttcctcttccgcagtccccccttttccttcc
tccttccctacttccctccttgaatgaactctcacatctctcctttaaat
gaccgactcgcttatctagaataagtaagaagagtgcagatctgaagatt
aagtggcattacacgtcccttttgtccccacctcgctccctttcctctct
ttcgccctagATACCCAGACGGGATCTCCTCTACACCCTCTGCCCCCTTC
GAGGTGAACGAGGAGACCGACAAGTCAGGTGTTGAGTACGAATTGATTCA
TCGCGGACCAGAGGGGGTAGGGGAAGAAGAAGAAGAAGATAACGAGGAGG
AGGAGATAGGGAATGAAGAGGAAATGGCGGAAGAGATTTGAGCACGCCTA
GAGGTAGGGTGCAAGGAGGATGGGAGTGAATGAGGAAGACGCATGCTCTC
TTGCCAGCGTGAGATAACTTAGGCGAAAGCAGAGAGCTTAATAATCGAAA
ACCCCAGCCCATACACATTAAAAAAAGTCGTTTACACATATAAGAAACAC
CGGCTCAGGGAAAACTTTACGGGTTGGAAAAAAGGCTGTGGAGCCGCAGG
AAATCAACGGAGGGATTGATGGCGGCCGAGCGAGCAGCACCTGGACACTA
AAAAGACTTAAAATCAAAA
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protein sequence of NO26G00220.1

>NO26G00220.1-protein ID=NO26G00220.1-protein|Name=NO26G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLERARVDGSITKIAEVTVGDETGTITLRARNGQVDFLVQGLRETEEDET
KPLVVVVRNAGVAMYKGHMRLIVNKWGKLSRYPDGISSTPSAPFEVNEET
DKSGVEYELIHRGPEGVGEEEEEDNEEEEIGNEEEMAEEI*
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Synonyms
Publications