NO26G00130, NO26G00130 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_008813343.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Phoenix dactylifera] >XP_008813344.1 PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Phoenix dactylifera]) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8 Identity = 55/173 (31.79%), Postives = 78/173 (45.09%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKD----CEPVEAFMCGSKHP-PCGFVTIRRSDA 173 KLFIG +S DTN+ L +YFK GE+V A + KDR TG ++ +GF+ F D A R V E H D + +K V R Q ++ + V GR + ++FVGGL TE D F+ + V + ++ P GF+T DA Sbjct: 7 KLFIGGISWDTNEDRLREYFKGF--GEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVTEKHLIDGRMVEAKKAVPRDDQQILHR----------------NSSSSHGSPVPGRTK--KIFVGGLASTVTEADFKKYFEQFGTITDVVVMYDHNTRRPRGFGFITFGSEDA 159
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_010524610.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Tarenaya hassleriana] >XP_010524611.1 PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Tarenaya hassleriana]) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8 Identity = 45/141 (31.91%), Postives = 65/141 (46.10%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GFI F D A R ++E H D + +K V R Q ++ + G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVIMKDRTTGRARGFGFIVFADPAVAERVIKEKHNIDGRMVEAKRAVPRDDQNIISRSNQSSSIQGS----------------PGPGRTRKIFVGGLPSSVTESDFKKYFQ 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_020580231.1 (heterogeneous nuclear ribonucleoprotein 1-like [Phalaenopsis equestris]) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8 Identity = 53/173 (30.64%), Postives = 73/173 (42.20%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKDCEPVEAFMCGSKHPP-----CGFVTIRRSDA 173 KLFIG +S DTN+ L YFK+ GE+V A + KDR TG ++ +GF+ F D A R V E H D + +K V R Q MV++ G ++FVGGL T+ D F+ + + H GF+T DA Sbjct: 7 KLFIGGISWDTNEDRLRGYFKNF--GEVVEAVIMKDRTTGRARGFGFVVFADPAVADRVVMEKHQIDGRMVEAKKAVPRDDQHMVNRNTSSIQGS------------------PGPGRTKKIFVGGLASSVTDTDFKKYFEQFGTITDVIVMYDHNTQRPRGFGFITFDSEDA 159
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_020590701.1 (RNA-binding protein Musashi homolog 2-like [Phalaenopsis equestris] >XP_020590702.1 RNA-binding protein Musashi homolog 2-like [Phalaenopsis equestris]) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8 Identity = 57/178 (32.02%), Postives = 82/178 (46.07%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKD----CEPVEAFMCGSKHP-PCGFVTIRRSDANLEKA 178 KLFIG +S DTN+ L +YFK GEIV A + KDR TG ++ +GF+ F D A R + E H D + +K V R Q ++++ GR + ++FVGGL TE D F+ + V + ++ P GF+T DA +EKA Sbjct: 7 KLFIGGISWDTNEDRLREYFKSF--GEIVEAVIMKDRTTGRARGFGFVVFADPAVAERVILEKHQIDGRMVEAKKAVPRDDQHILNR----------------NSSSLPGSPAPGRTK--KIFVGGLASTVTEADFKKYFEQFGTITDVVVMYDHNTQRPRGFGFITFDSEDA-IEKA 163
BLAST of NO26G00130 vs. NCBI_GenBank
Match: AAK92717.1 (putative RNA-binding protein [Arabidopsis thaliana]) HSP 1 Score: 70.1 bits (170), Expect = 1.800e-8 Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GF+ F D A + E H D L +K V R Q MV++ +G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQG----------------SPSGPGRTRKIFVGGLPSSVTESDFKTYFE 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: AAF21191.1 (putative RNA-binding protein [Arabidopsis thaliana]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GF+ F D A + E H D L +K V R Q MV++ G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQG----------------SPGGPGRTRKIFVGGLPSSVTESDFKTYFE 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: NP_566321.1 (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >AAL32012.1 AT3g07810/F17A17_15 [Arabidopsis thaliana] >AAN12995.1 putative RNA-binding protein [Arabidopsis thaliana] >AEE74606.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >OAP04864.1 hypothetical protein AXX17_AT3G07810 [Arabidopsis thaliana]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GF+ F D A + E H D L +K V R Q MV++ G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQG----------------SPGGPGRTRKIFVGGLPSSVTESDFKTYFE 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_020887201.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Arabidopsis lyrata subsp. lyrata] >EFH58811.1 hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GF+ F D A + E H D L +K V R Q MV++ G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQG----------------SPGGPGRTRKIFVGGLPSSVTESDFKTYFE 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: NP_850539.1 (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >AEE74607.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFK 146 KLFIG +S DTN+ L++YF GE++ A + KDR TG ++ +GF+ F D A + E H D L +K V R Q MV++ G ++FVGGLP TE D F+ Sbjct: 7 KLFIGGISWDTNEERLKEYFSSF--GEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQG----------------SPGGPGRTRKIFVGGLPSSVTESDFKTYFE 129
BLAST of NO26G00130 vs. NCBI_GenBank
Match: XP_010035445.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Eucalyptus grandis] >XP_010035446.1 PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Eucalyptus grandis] >KCW46850.1 hypothetical protein EUGRSUZ_K00657 [Eucalyptus grandis] >KCW46851.1 hypothetical protein EUGRSUZ_K00657 [Eucalyptus grandis] >KCW46852.1 hypothetical protein EUGRSUZ_K00657 [Eucalyptus grandis]) HSP 1 Score: 69.7 bits (169), Expect = 2.300e-8 Identity = 62/213 (29.11%), Postives = 93/213 (43.66%), Query Frame = 0 Query: 7 KLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELH--DSELDGSKITVERSTQGMVDKXXXXXXXXXXXXXXXXXXXXXXXMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKDCEPVEAFMCGSKHPP-----CGFVTIRRSDANLEKAQSYDGIYYKDSQWRLAVKAAKPVTDRVRRGRSRSP 213 KLFIG +S DTN+ L++YF GE+V A + KDR TG ++ +GF+ F D A R +++ H D + +K V R Q ++ + G ++FVGGL TE D F+ V + H GF+T DA ++KA G +++ + + VK A P + G SRSP Sbjct: 7 KLFIGGISWDTNEERLKEYF--GAYGEVVEAIIMKDRTTGRARGFGFVVFADPAVAERVIKDKHSIDGRMVEAKKAVPRDDQNILSRNSSSVH------------------SSPGPGRTKKIFVGGLASTVTESDFKKYFEQFGTVTDVVVMYDHNTQRPRGFGFITYDTEDA-VDKALL--GTFHELNGKMVEVKRAVP--KELSPGPSRSP 194 The following BLAST results are available for this feature:
BLAST of NO26G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G00130 ID=NO26G00130|Name=NO26G00130|organism=Nannochloropsis oceanica|type=gene|length=4272bpback to top protein sequence of NO26G00130.1 >NO26G00130.1-protein ID=NO26G00130.1-protein|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bpback to top Synonyms
Publications
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