NO26G00130.1, NO26G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00130.1
Unique NameNO26G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2232
Alignment locationchr26:41783..46054 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:41783..46054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00130.1 vs.
Match: EWM23046.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 197.6 bits (501), Expect = 7.300e-47
Identity = 101/142 (71.13%), Postives = 113/142 (79.58%), Query Frame = 0 
Query:    1 MSLLGFKLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKRYGFITFKDEADGIRAVEELHDSELDGSKITVERSTQGMVDKDRGRGGGGGGGGGGGGGGGGGDGMEVAGRQEDVRLFVGGLPDGCTERDLMD 143
            MSL+GFKLFIGNLSK+T+D GLEKYFKDAIGGEIVWAQVCKDRNTG+SKRYGFITFKDEADG RA+EELH++ELDGSKITV+RSTQGM++KD                 GGG G E     E+VRLFVGGLPD C E DLM+
Sbjct:    1 MSLIGFKLFIGNLSKETHDTGLEKYFKDAIGGEIVWAQVCKDRNTGESKRYGFITFKDEADGKRAIEELHETELDGSKITVDRSTQGMIEKD-----------------GGGRGAE----DENVRLFVGGLPDNCVEEDLME 121
The following BLAST results are available for this feature:
BLAST of NO26G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23046.17.300e-4771.13rna recognition motif-containing protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00130NO26G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00130.1NO26G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00130.1.cds1NO26G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds2NO26G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds3NO26G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds4NO26G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds5NO26G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds6NO26G00130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds7NO26G00130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds8NO26G00130.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds9NO26G00130.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds10NO26G00130.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds11NO26G00130.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00130.1.cds12NO26G00130.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp
TGGTGCCTTGCCTCGGGTCTGTTGATGAAGGATAAAGGGAAAGGGGAGGG
GAGGTTTACGCTCGAGCATATTATAGTACGTTCGGAGGAAAAGAACAAAT
GCAAGTGTGGACTTTTTGCTAAGTACGCATTCTTATGTATGTAAACGACT
GTGAATTTGGTCGAGTACATAGAGAGCTGGCAGCAAATGATGCTGCACCA
GCTATCTCATCACTGAAGGAAAAAGAACCCACCTGCATCAAGCAATAGAA
CATCATAGCCCTGCCTTGCCCTGGCTACGGTCGTATGCATCGACGCATCC
ATGGATCAAACGCGCGTACAACACAGCTTCTACCACCATCACCTCACATC
TATTTGCTATTCTAGCAGCAGGTGTGGCATGCGGGACTCGAACGCAGTTA
CAGACCCCTCCCAGGGCTTCCTGCGTCTACCAAAAGCGCACCTTTTATTT
ACCTCCAGCCCCCCCCCTTCCACACGCTACTGAACCCCTTCCTCATCCCT
TTCCTCGCGCGTCGTACGCATGCCGCTGTCTTCTTCCTACATCTCCTTCT
TCCCCTCCTCTCCCGCCTCCCCTCATGTCCTTCCACGGAAACCTTATCCA
CCTGTCCTCCCACGCCCCTCCCTCCTTCCACCCAATACTTGACGCTTGCG
CCTAGCATTTTGTCTCAGGCAGTAGCAGCAGCAAGAGACTCTATGTTGGC
ATGAGACACACACTGACCTGCGCCTTGCTTCCCCTTTTTCTGAGGCGACC
TTTGTCGTCCTCCCACTGCTCTCCTTGTAAAGAGCTCCAACGCAGCCACA
GCTCAGCGCCACCACACCCACCAACCCCCCCTTCTCCTCCTCCTCCTCCC
CTTCTCGTGTTCCTCTACACATACACACACCTCTCAAAGCACGCACGGGC
CATAAGCAACCGGGGCAGCATCAGCAGCAGTAGCCGCAGCATCAGCACCA
GCGGCAAATCACCTCTTCCCAGTCCTCGTTCTCCCCTTCCTGCACGCACG
AACAAAAATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTA
AGGACACGAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGG
GGCGAGATCGTGTGGGCGCAGGTATGCAAGGACCGCAACACGGGCGACAG
CAAGCGCTACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGG
CCGTGGAGGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTG
GAGCGGAGCACACAGGGAATGGTTGACAAGGACAGGGGCCGTGGAGGTGG
AGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGATGGAA
TGGAGGTGGCAGGGCGGCAGGAAGACGTGCGCTTGTTCGTGGGAGGACTG
CCGGATGGATGCACAGAAAGAGACCTGATGGACCTCTTCAAGGACTGCGA
GCCTGTGGAGGCCTTCATGTGCGGCTCGAAGCATCCCCCCTGTGGCTTTG
TCACTATCAGGCGCTCCGACGCAAACTTGGAAAAGGCGCAGAGCTACGAC
GGCATCTACTACAAAGACTCCCAGTGGCGCCTGGCGGTCAAGGCGGCGAA
GCCCGTGACGGACCGCGTCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAG
CACGAGGCCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATAC
CGAGGGATGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCC
GGAGGGCGTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGCTCCGATC
CTGTTGAAGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTACGGT
TTCGTCGTCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTGCCTT
GGAAGGGGATTATTTCGACGACCGATGCCCCCACCGCTTGGCAGTCACCT
TCTCCAAGCCCAGGGGCGGCGGGGGCCGAGATGTGGGGGGCGGACGCGGT
GGGGGGGACGATCGTTATGGTGGAGGAGGAGGAGGGAGGGAAGGAGGAGG
CTACAGCCGCGGACGCAGTCGGTCACCTAGCTACCCCCGCGGTGGGGGCC
GTCGGGGTCGCTCACCTTCGTATGAACGTGCGCCACGACGAGGCCGATCT
CGCTCTCGGTCGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAGAGGCG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
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protein sequence of NO26G00130.1

>NO26G00130.1-protein ID=NO26G00130.1-protein|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSLLGFKLFIGNLSKDTNDIGLEKYFKDAIGGEIVWAQVCKDRNTGDSKR
YGFITFKDEADGIRAVEELHDSELDGSKITVERSTQGMVDKDRGRGGGGG
GGGGGGGGGGGGDGMEVAGRQEDVRLFVGGLPDGCTERDLMDLFKDCEPV
EAFMCGSKHPPCGFVTIRRSDANLEKAQSYDGIYYKDSQWRLAVKAAKPV
TDRVRRGRSRSPPRARGRSRSPPPRSGGVLYRGMDGGREVRLFVGGLPEG
VSEKDLMHKFRRSDPVEAFLPPRQSKAPLYGFVVIRDEGRNVKEAFALEG
DYFDDRCPHRLAVTFSKPRGGGGRDVGGGRGGGDDRYGGGGGGREGGGYS
RGRSRSPSYPRGGGRRGRSPSYERAPRRGRSRSRSRSRSRRYSPY*
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mRNA from alignment at chr26:41783..46054+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=4272bp|location=Sequence derived from alignment at chr26:41783..46054+ (Nannochloropsis oceanica)
TGGTGCCTTGCCTCGGGTCTGTTGATGAAGGATAAAGGGAAAGGGGAGGG
GAGGTTTACGCTCGAGCATATTATAGTACGTTCGGAGGAAAAGAACAAAT
GCAAGTGTGGACTTTTTGCTAAGTACGCATTCTTATGTATGTAAACGACT
GTGAATTTGGTCGAGTACATAGAGAGCTGGCAGCAAATGATGCTGCACCA
GCTATCTCATCACTGAAGGAAAAAGAACCCACCTGCATCAAGCAATAGAA
CATCATAGCCCTGCCTTGCCCTGGCTACGGTCGTATGCATCGACGCATCC
ATGGATCAAACGCGCGTACAACACAGCTTCTACCACCATCACCTCACATC
TATTTGCTATTCTAGCAGCAGGTGTGGCATGCGGGACTCGAACGCAGTTA
CAGACCCCTCCCAGGGCTTCCTGCGTCTACCAAAAGCGCACCTTTTATTT
ACCTCCAGCCCCCCCCCTTCCACACGCTACTGAACCCCTTCCTCATCCCT
TTCCTCGCGCGTCGTACGCATGCCGCTGTCTTCTTCCTACATCTCCTTCT
TCCCCTCCTCTCCCGCCTCCCCTCATGTCCTTCCACGGAAACCTTATCCA
CCTGTCCTCCCACGCCCCTCCCTCCTTCCACCCAATACTTGACGCTTGCG
CCTAGCATTTTGTCTCAGGCAGTAGCAGCAGCAAGAGACTCTATGTTGGC
ATGAGACACACACTGACCTGCGCCTTGCTTCCCCTTTTTCTGAGGCGACC
TTTGTCGTCCTCCCACTGCTCTCCTTGTAAAGAGCTCCAACGCAGCCACA
GCTCAGCGCCACCACACCCACCAACCCCCCCTTCTCCTCCTCCTCCTCCC
CTTCTCGTGTTCCTCTACACATACACACACCTCTCAAAGCACGCACGGGC
CATAAGCAACCGGGGCAGCATCAGCAGCAGTAGCCGCAGCATCAGCACCA
GCGGCAAATCACCTCTTCCCAGTCCTCGTTCTCCCCTTCCTGCACGCACG
AACAAAAATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTA
AGGACACGAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGG
GGCGAGATCGTGTGGGCGCAGGTGCGTCCCTCCCTCCCTCCCTCCCACCC
TCTCTTTCTCCCTCCCTCCCTCCCGACCAAGCTTTTTAACCATCCCCTCA
TTCTCACTCCCTAGGTATGCAAGGACCGCAACACGGGCGACAGCAAGCGC
TACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGGTATGATG
TAGGCCCTCCTCCTCCCTCCCCCCTCCCTCCCCTCCTCCCTGGCACCCTG
CCTCTCGCACTGTGACGAAAGACGCACGTGAAGTTCCCCCCCTTTTCGCT
CCCCGTCATACCTACCTACTTAGGGACCTCCGTCCAACCGACGACACAGA
CATGTGTCTGCCATCTACTCTCAAGGGGACCCAAAGCTAACCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCGTGGA
GGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTGGAGCGGA
GCACACAGGGAATGGTTGACAAGGGTAAGCAACGGGAGATAAGGAGGGAT
GGAGATGGGAAGGGAGGGGTCGAGGGAGGGCTTGTACTTTTGCCTGGTGC
CACGTGCTCTCTCATACTCACCAAATAGCACGCTCTTTCCCTCCCTCGTC
CCTCCCTCCCTCCCTCCCTCCCTCCTCCCCCCTTATGAAAATACAGACAG
GGGCCGTGGAGGTGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGCG
GCGGCGGCGATGGAATGGAGGTGGCAGGGCGGCAGGAAGACGTGCGCTTG
TTCGTGGGAGGACTGCCGGATGGATGCACAGAAAGAGACCTGATGGAGTG
AGTGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGGAGGGTATGGG
ATACACAAGCCACAATAACAGTTGCATGCCCACTCATTTTTCCCCTTCCC
CTCCCTTCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCCCCAGCCTCTTCA
AGGACTGCGAGCCTGTGGAGGCCTTCATGTGCGGCTCGAAGCATCCCCCC
TGTGGCTTTGTCACTATCAGGCGCTCCGACGCAAACTTGGAAAAGGCGCA
GAGCTACGACGGTACGCCCCCTCCTCCCTCCCTCCCTCCCTCCCTCACTC
CCGTCCTGCCCTTCCTTCTTGTCTAGGTTCTTCCCACACTTACCCGCCTC
TCCCTTTCTCCTCACCTTCCCTCCCTCTCTCCCTTCCCCCCTCCCTCCCT
CCCCTCCCTCGCAGGCATCTACTACAAAGACTCCCAGTGGCGCCTGGCGG
TCAAGGTAAGGAGTGAAGGAGGGGAATCAAGAGGGAATAAAAGGGAGCTT
GAGCCATTCACTTGTACTTCTTTACTGACCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTGGCAGGCGGCGAAGCCCGTGACGGACCGCG
TCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAGCACGAGGTATAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGG
GAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGAAGGGAGGGGTTGTTCAA
GTGACGATAAAATGGGCTGTCACAGACCAACTTGCAGAGAGTAACATTCA
CCCTCTTCTCCTCCCTCCTTTCCTCCCGCCCTCCCTCCCTCCCTCCCTCA
GGCCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATACCGAGG
GATGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCCGGAGG
GCGTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGGTAGGGAGGGAGG
GAGGGAGGGAGGGGGGGAGGGAGGGGGGGGGAGGAGTCGCTTTGTTCCTT
TGCGTGTGTCTATATTGGATGGTGATTTAGGCCTCTCTCGTCGAGGACCC
GGCCATCCACCTCGAGGGATGTCACCCCTCTCTCCCTCTCTCCCTCCCTC
GCTCCCTCCTTTCTTCCCTCCCTCCTTCCTTCCTTCCCGGGCCTCCTTCC
TTCTAGGTAGAAGACGACGACAACGAGACCCACCACCTCCCTTTGCCCAT
CTCAACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCTCAGCTCC
GATCCTGTTGAAGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTA
CGGTTTCGTCGTCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTG
CCTTGGAAGGGTGAGGAGGGTGGGAGGGCGGGCGGACGGGAGGGAGGGAA
AGAGGAGATTTCGTGTAAAATGTCTTCCTGCCTAAAGTTGATGATCCTGT
TGATCCTCACAGCCCCCGTCCCCTCCTCCCTCCCTCCCTCCTTCCCCTCC
CTCCCTCCCACCCTCCCCTAGGGATTATTTCGACGACCGATGCCCCCACC
GCTTGGCAGTCACCTTCTCCAAGCCCAGGGGCGGCGGGGGCCGAGATGTG
GGGGGCGGACGCGGTGGGGGGGACGATCGTTATGGTACGTAGAGGGAGGG
GAGGAGGGAGGGAGGGAAGGAAGGAGGGATTGGCGGCTTCTCTTCTTTTT
AAGTAAGGAAGACACTCACGTACTTTCTTCCCTCCCTCCCTCCCTCCCCT
CCCTCCTTCCTTCCTCCCTCCCCCCCTCCTTCCTTCTCTTTCCCCGCCCT
TTCCCTCTGTCTGTCTCTGTCTCCCGTCCTCTCCCATCAGGTGGAGGAGG
AGGAGGGAGGGAAGGAGGAGGCTACAGCCGCGGACGCAGTCGGTCACCTA
GCTACCCCCGCGGTGGGGGCCGTCGGGGTCGCTCACCTTCGTATGAACGT
GAGTAGAGGGAGGGGGGGAGGAAGGAGGGAGGGAGGGAGGGATGTGTTCG
AAGTGAGTTTTTTGGGCTATTTGCTTTCCGCAAAGCAGGTGCTTTTAACG
TAGCGGTGGGAAGGCCACAGAGACTCGCTGGCATTCCCTCTTGATAACGT
TTTTGATTAAGACATGTAATGTGATCAAATTAAATCTTATGTAATCTAAT
TTAATTGTATCGAACAGGTGCGCCACGACGAGGCCGATCTCGCTCTCGGT
CGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAGAGGCGCAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr26:41783..46054+

>NO26G00130.1 ID=NO26G00130.1|Name=NO26G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr26:41783..46054+ (Nannochloropsis oceanica)
ATGTCTCTCCTGGGTTTCAAGCTCTTTATAGGAAACCTCTCTAAGGACAC
GAATGATATCGGCCTCGAGAAATACTTCAAGGATGCCATCGGGGGCGAGA
TCGTGTGGGCGCAGGTATGCAAGGACCGCAACACGGGCGACAGCAAGCGC
TACGGCTTTATCACCTTCAAGGACGAGGCGGACGGGATCCGGGCCGTGGA
GGAGTTGCATGATTCCGAGCTGGACGGCTCTAAGATCACAGTGGAGCGGA
GCACACAGGGAATGGTTGACAAGGACAGGGGCCGTGGAGGTGGAGGAGGG
GGAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGATGGAATGGAGGT
GGCAGGGCGGCAGGAAGACGTGCGCTTGTTCGTGGGAGGACTGCCGGATG
GATGCACAGAAAGAGACCTGATGGACCTCTTCAAGGACTGCGAGCCTGTG
GAGGCCTTCATGTGCGGCTCGAAGCATCCCCCCTGTGGCTTTGTCACTAT
CAGGCGCTCCGACGCAAACTTGGAAAAGGCGCAGAGCTACGACGGCATCT
ACTACAAAGACTCCCAGTGGCGCCTGGCGGTCAAGGCGGCGAAGCCCGTG
ACGGACCGCGTCCGTCGAGGCCGCAGCCGGAGCCCACCCCGAGCACGAGG
CCGATCCCGCTCTCCTCCTCCTCGCTCCGGAGGGGTCCTATACCGAGGGA
TGGACGGAGGGAGGGAGGTCCGCCTCTTCGTGGGAGGACTGCCGGAGGGC
GTCTCCGAAAAGGACTTGATGCACAAGTTTCGACGCTCCGATCCTGTTGA
AGCCTTCCTCCCTCCCCGTCAGTCGAAGGCGCCCCTGTACGGTTTCGTCG
TCATCCGCGACGAGGGCCGAAACGTGAAGGAGGCCTTTGCCTTGGAAGGG
GATTATTTCGACGACCGATGCCCCCACCGCTTGGCAGTCACCTTCTCCAA
GCCCAGGGGCGGCGGGGGCCGAGATGTGGGGGGCGGACGCGGTGGGGGGG
ACGATCGTTATGGTGGAGGAGGAGGAGGGAGGGAAGGAGGAGGCTACAGC
CGCGGACGCAGTCGGTCACCTAGCTACCCCCGCGGTGGGGGCCGTCGGGG
TCGCTCACCTTCGTATGAACGTGCGCCACGACGAGGCCGATCTCGCTCTC
GGTCGCGTTCTCGCTCCCGTCGGTACTCGCCTTACTAG
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Synonyms
Publications