NO26G00120, NO26G00120 (gene) Nannochloropsis oceanica

Overview
NameNO26G00120
Unique NameNO26G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2256
Alignment locationchr26:39551..41806 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:39551..41806 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G00120 vs. NCBI_GenBank
Match: EWM23045.1 (hypothetical protein Naga_100570g2 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 3.000e-82
Identity = 182/304 (59.87%), Postives = 223/304 (73.36%), Query Frame = 0 
Query:    9 KRPNLAPYVLMGVLLLPSTAAFLLPSSPLSLSLPPLLAAGRSSSRLQLQQ--------------------GEPQQSSTPPSLSSEDAPLSPSNPPDRSSSFISSTAAARLERLPDDTTERIEVVRVPEYEEMLAWAVDMDAQVEERRIAGLGGRVAEPSATAVDLTKKKPLEEKEALKINKIVQMLSRRVETKRVFFPNEMEELREALRDVETLLRDDAEHLKKAQQDAAAHNQAGRAKSRFQKRREMMIEETGDFDPIYGSKEVRDQIYLYLWSLVKRDPRYLDAP-SGGDGMEG----GEEE 288
            +RP L+  +++G+  LPS   FL P  P  L +   L+AGRSSS    QQ                    G         + ++ D+PLSPSNPPDRSS  +S +AAARLERLPDDT ERIEVVRVP++EEMLAWA+ MDA+VE RRIAGLGG VAEP +  VDLTK++PL +++  K+N +++MLS+R E+KRVF+PNEMEELREALRD+E+L++DDAEHLKKAQQDA   N+AGRAKSRFQK+RE+MIEETGDFDPIYGSKEVRDQIYLYLWSLVKR+PR L  P S G+  EG    GE+E
Sbjct:   11 RRPKLS-IIVLGIFFLPSVQGFLHPPLPALLQISYPLSAGRSSSSSGGQQAPTEHVNQQKRRKQPLGPEIGSQSDEEKGKAQANADSPLSPSNPPDRSSPALSPSAAARLERLPDDTEERIEVVRVPDFEEMLAWAIRMDARVERRRIAGLGGLVAEPPSPQVDLTKRRPLSKRDEDKMNTVIRMLSQRAESKRVFYPNEMEELREALRDMESLMKDDAEHLKKAQQDALILNKAGRAKSRFQKKREVMIEETGDFDPIYGSKEVRDQIYLYLWSLVKREPRLLVTPWSEGEEEEGKDGRGEQE 313
The following BLAST results are available for this feature:
BLAST of NO26G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23045.13.000e-8259.87hypothetical protein Naga_100570g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL051nonsL051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006130NSK006130Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00120.1NO26G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612206gene_10621Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100570g2gene7406Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00120.1NO26G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00120 ID=NO26G00120|Name=NO26G00120|organism=Nannochloropsis oceanica|type=gene|length=2256bp
CAACAGACCCGAGGCAAGGCACCACCACCCACAACTACACATGCCTTTTC
GCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGC
GTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCT
TTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTC
TCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTA
AGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTC
TTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACG
ACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGgtgcg
tcgctaattgtacattccctgctcacggtagctcttcttctatctcctcg
tgctctctattttccgttctcttgtcccgctcgttcacaccctcttctat
atgacaaattaaaaatatcttgaagtgctgtcttaatttcccttaaatcc
tttctcttaccccatccctccacagAAATGTTGGCGTGGGCCGTGGACAT
GGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGgtggggagggag
ggagggagggagggaaggagggagagagggagggagggagggaggggtgg
gtcggatcaacgaagccatgtataaacccttgtggtatcccctggtcaat
tatcacctcacttgatttccaccttgcctgccccctgtatgggaacatga
taaatttagattcctccgccaatactgccgcgtctcgccatgccaaagcc
gtcgaatgacaccaatagtcatgttttccgccctcctccctccctccctc
cctccctccctcccagGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGT
AGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAA
ACAAAATTGTGCAGATGCTCTCACGgtaagccctctccctcactctccct
ccttccttccttctgtcttgcctgtctctcttgtctctcacgcactggtg
tttctcgttcccaccaaacaacagGCGGGTCGAGACCAAGCGCGTTTTCT
TCCCTAACGAAATGGAAGAATTGCGAGAGgttagtttcccctctctccct
ccctccctcccttctcacctcctccttttcttcctccgtttatagaggag
ctgtatcgcattcgttcaccctccctccctccctccctcccttctttatt
cctctcctccttcctacaccagGCCCTCCGGGACGTGGAAACTTTACTCA
GAGACGATGCGGAGCACCTGAAAAAGGCGCAGCAGgtgaggggaggaggg
aaggagggagagcttgaagcagacagtttcaaaaagagacagtgggagac
ggagggagagaggaaaggagggaggaatggttcgaaagaagcttctcgat
atgacattcaactcgccgtttctctgtctctttctccttttcccctctcc
ctccctcagGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCG
CTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAACGGGTGATTTTGATC
CCATCTACGGgtaagcatcccccccctcccctcctccttcctttgcttct
ttccttctttcctccgtccctccatttctcccgctttatccgtctttaat
ccctcttgcacgtgtgtcaggtccgtgtctttatctactcctccctcccc
cccgccctccctccctccctcccccactccctcccttccagGAGCAAAGA
AGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATC
CACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAG
GAGGAGTAGGGAGGGGGGGAGAGGGAGGGAAACGTGTACAATAGACGTAA
AGGATGGAAAGGGGGAGAGATGAATGCACGTGAAAAGGATATGGAGAGAC
TTGAGGCAAATGCCTAAAGAGGGAGCCAAGGGATATAAAGGCGGAGATAG
ATGAACTGAAGTGTGAAGAAAAGACCAGAACACGGCAGCCAGAAAACAGC
AACCCTAACATTAAGAGGAAGGCCTCGCGGACGACATACAGAGTGATGCA
TTGCCGGATAGAAGAATACGATTGGGGATTTGAAAGAATACTCATGCTCT
CCCTCT
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protein sequence of NO26G00120.1

>NO26G00120.1-protein ID=NO26G00120.1-protein|Name=NO26G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPFRSRKRKRPNLAPYVLMGVLLLPSTAAFLLPSSPLSLSLPPLLAAGRS
SSRLQLQQGEPQQSSTPPSLSSEDAPLSPSNPPDRSSSFISSTAAARLER
LPDDTTERIEVVRVPEYEEMLAWAVDMDAQVEERRIAGLGGRVAEPSATA
VDLTKKKPLEEKEALKINKIVQMLSRRVETKRVFFPNEMEELREALRDVE
TLLRDDAEHLKKAQQDAAAHNQAGRAKSRFQKRREMMIEETGDFDPIYGS
KEVRDQIYLYLWSLVKRDPRYLDAPSGGDGMEGGEEE*
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Synonyms
Publications