NO26G00120.1, NO26G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00120.1
Unique NameNO26G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1201
Alignment locationchr26:39551..41806 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:39551..41806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00120.1 vs.
Match: EWM23045.1 (hypothetical protein Naga_100570g2 [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 3.000e-82
Identity = 183/304 (60.20%), Postives = 225/304 (74.01%), Query Frame = 0 
Query:    9 KRPNLAPYVLMGVLLLPSTAAFLLPSSPLSLSLPPLLAAGRSSSRLQLQQGEPQQSSTP--------PSLSSE------------DAPLSPSNPPDRSSSFISSTAAARLERLPDDTTERIEVVRVPEYEEMLAWAVDMDAQVEERRIAGLGGRVAEPSATAVDLTKKKPLEEKEALKINKIVQMLSRRVETKRVFFPNEMEELREALRDVETLLRDDAEHLKKAQQDAAAHNQAGRAKSRFQKRREMMIEETGDFDPIYGSKEVRDQIYLYLWSLVKRDPRYLDAP-SGGDGMEG----GEEE 288
            +RP L+  +++G+  LPS   FL P  P  L +   L+AGRSSS    QQ   +  +          P + S+            D+PLSPSNPPDRSS  +S +AAARLERLPDDT ERIEVVRVP++EEMLAWA+ MDA+VE RRIAGLGG VAEP +  VDLTK++PL +++  K+N +++MLS+R E+KRVF+PNEMEELREALRD+E+L++DDAEHLKKAQQDA   N+AGRAKSRFQK+RE+MIEETGDFDPIYGSKEVRDQIYLYLWSLVKR+PR L  P S G+  EG    GE+E
Sbjct:   11 RRPKLS-IIVLGIFFLPSVQGFLHPPLPALLQISYPLSAGRSSSSSGGQQAPTEHVNQQKRRKQPLGPEIGSQSDEEKGKAQANADSPLSPSNPPDRSSPALSPSAAARLERLPDDTEERIEVVRVPDFEEMLAWAIRMDARVERRRIAGLGGLVAEPPSPQVDLTKRRPLSKRDEDKMNTVIRMLSQRAESKRVFYPNEMEELREALRDMESLMKDDAEHLKKAQQDALILNKAGRAKSRFQKKREVMIEETGDFDPIYGSKEVRDQIYLYLWSLVKREPRLLVTPWSEGEEEEGKDGRGEQE 313
The following BLAST results are available for this feature:
BLAST of NO26G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23045.13.000e-8260.20hypothetical protein Naga_100570g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00120NO26G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00120.1NO26G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00120.1.cds1NO26G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds2NO26G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds3NO26G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds4NO26G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds5NO26G00120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds6NO26G00120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00120.1.cds7NO26G00120.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00120.1 ID=NO26G00120.1|Name=NO26G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
CAACAGACCCGAGGCAAGGCACCACCACCCACAACTACACATGCCTTTTC
GCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGC
GTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCT
TTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTC
TCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTA
AGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTC
TTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACG
ACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGAAATG
TTGGCGTGGGCCGTGGACATGGACGCACAGGTGGAGGAGCGGCGGATTGC
AGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGTAGACCTGA
CCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAAACAAAATT
GTGCAGATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTTTCTTCCCTAA
CGAAATGGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAAACTTTACTCA
GAGACGATGCGGAGCACCTGAAAAAGGCGCAGCAGGACGCCGCCGCTCAC
AACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGCGGGAGATGAT
GATTGAGGAAACGGGTGATTTTGATCCCATCTACGGGAGCAAAGAAGTGC
GTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATCCACGC
TATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAGGAGGA
GTAGGGAGGGGGGGAGAGGGAGGGAAACGTGTACAATAGACGTAAAGGAT
GGAAAGGGGGAGAGATGAATGCACGTGAAAAGGATATGGAGAGACTTGAG
GCAAATGCCTAAAGAGGGAGCCAAGGGATATAAAGGCGGAGATAGATGAA
CTGAAGTGTGAAGAAAAGACCAGAACACGGCAGCCAGAAAACAGCAACCC
TAACATTAAGAGGAAGGCCTCGCGGACGACATACAGAGTGATGCATTGCC
GGATAGAAGAATACGATTGGGGATTTGAAAGAATACTCATGCTCTCCCTC
T
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protein sequence of NO26G00120.1

>NO26G00120.1-protein ID=NO26G00120.1-protein|Name=NO26G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPFRSRKRKRPNLAPYVLMGVLLLPSTAAFLLPSSPLSLSLPPLLAAGRS
SSRLQLQQGEPQQSSTPPSLSSEDAPLSPSNPPDRSSSFISSTAAARLER
LPDDTTERIEVVRVPEYEEMLAWAVDMDAQVEERRIAGLGGRVAEPSATA
VDLTKKKPLEEKEALKINKIVQMLSRRVETKRVFFPNEMEELREALRDVE
TLLRDDAEHLKKAQQDAAAHNQAGRAKSRFQKRREMMIEETGDFDPIYGS
KEVRDQIYLYLWSLVKRDPRYLDAPSGGDGMEGGEEE*
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mRNA from alignment at chr26:39551..41806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00120.1 ID=NO26G00120.1|Name=NO26G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at chr26:39551..41806- (Nannochloropsis oceanica)
CAACAGACCCGAGGCAAGGCACCACCACCCACAACTACACATGCCTTTTC
GCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGTCTTGATGGGC
GTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCATCCTCTCCCCT
TTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCCTCCTCTCGTC
TCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACCACCCTCATTA
AGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCGACCGCTCCTC
TTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGCCTCCCAGACG
ACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTACGAGGGTGCG
TCGCTAATTGTACATTCCCTGCTCACGGTAGCTCTTCTTCTATCTCCTCG
TGCTCTCTATTTTCCGTTCTCTTGTCCCGCTCGTTCACACCCTCTTCTAT
ATGACAAATTAAAAATATCTTGAAGTGCTGTCTTAATTTCCCTTAAATCC
TTTCTCTTACCCCATCCCTCCACAGAAATGTTGGCGTGGGCCGTGGACAT
GGACGCACAGGTGGAGGAGCGGCGGATTGCAGGCCTAGGTGGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGGTGG
GTCGGATCAACGAAGCCATGTATAAACCCTTGTGGTATCCCCTGGTCAAT
TATCACCTCACTTGATTTCCACCTTGCCTGCCCCCTGTATGGGAACATGA
TAAATTTAGATTCCTCCGCCAATACTGCCGCGTCTCGCCATGCCAAAGCC
GTCGAATGACACCAATAGTCATGTTTTCCGCCCTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCCGT
AGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAATAA
ACAAAATTGTGCAGATGCTCTCACGGTAAGCCCTCTCCCTCACTCTCCCT
CCTTCCTTCCTTCTGTCTTGCCTGTCTCTCTTGTCTCTCACGCACTGGTG
TTTCTCGTTCCCACCAAACAACAGGCGGGTCGAGACCAAGCGCGTTTTCT
TCCCTAACGAAATGGAAGAATTGCGAGAGGTTAGTTTCCCCTCTCTCCCT
CCCTCCCTCCCTTCTCACCTCCTCCTTTTCTTCCTCCGTTTATAGAGGAG
CTGTATCGCATTCGTTCACCCTCCCTCCCTCCCTCCCTCCCTTCTTTATT
CCTCTCCTCCTTCCTACACCAGGCCCTCCGGGACGTGGAAACTTTACTCA
GAGACGATGCGGAGCACCTGAAAAAGGCGCAGCAGGTGAGGGGAGGAGGG
AAGGAGGGAGAGCTTGAAGCAGACAGTTTCAAAAAGAGACAGTGGGAGAC
GGAGGGAGAGAGGAAAGGAGGGAGGAATGGTTCGAAAGAAGCTTCTCGAT
ATGACATTCAACTCGCCGTTTCTCTGTCTCTTTCTCCTTTTCCCCTCTCC
CTCCCTCAGGACGCCGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCG
CTTCCAAAAGCGGCGGGAGATGATGATTGAGGAAACGGGTGATTTTGATC
CCATCTACGGGTAAGCATCCCCCCCCTCCCCTCCTCCTTCCTTTGCTTCT
TTCCTTCTTTCCTCCGTCCCTCCATTTCTCCCGCTTTATCCGTCTTTAAT
CCCTCTTGCACGTGTGTCAGGTCCGTGTCTTTATCTACTCCTCCCTCCCC
CCCGCCCTCCCTCCCTCCCTCCCCCACTCCCTCCCTTCCAGGAGCAAAGA
AGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACGAGATC
CACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAGGAGAG
GAGGAGTAGGGAGGGGGGGAGAGGGAGGGAAACGTGTACAATAGACGTAA
AGGATGGAAAGGGGGAGAGATGAATGCACGTGAAAAGGATATGGAGAGAC
TTGAGGCAAATGCCTAAAGAGGGAGCCAAGGGATATAAAGGCGGAGATAG
ATGAACTGAAGTGTGAAGAAAAGACCAGAACACGGCAGCCAGAAAACAGC
AACCCTAACATTAAGAGGAAGGCCTCGCGGACGACATACAGAGTGATGCA
TTGCCGGATAGAAGAATACGATTGGGGATTTGAAAGAATACTCATGCTCT
CCCTCT
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Coding sequence (CDS) from alignment at chr26:39551..41806-

>NO26G00120.1 ID=NO26G00120.1|Name=NO26G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr26:39551..41806- (Nannochloropsis oceanica)
ATGCCTTTTCGCTCGAGAAAACGAAAGAGGCCAAACCTGGCCCCATATGT
CTTGATGGGCGTCCTTCTCCTCCCTTCCACCGCCGCCTTCCTCCTTCCAT
CCTCTCCCCTTTCCCTTTCCCTCCCTCCCCTCCTCGCCGCCGGCCGCTCC
TCCTCTCGTCTCCAATTACAACAGGGAGAGCCGCAGCAGTCATCAACACC
ACCCTCATTAAGCAGTGAAGACGCCCCTCTCTCACCCTCCAACCCTCCCG
ACCGCTCCTCTTCCTTTATCTCGTCCACTGCTGCGGCCCGTTTGGAGCGC
CTCCCAGACGACACTACGGAGCGTATCGAGGTTGTTCGTGTTCCTGAGTA
CGAGGAAATGTTGGCGTGGGCCGTGGACATGGACGCACAGGTGGAGGAGC
GGCGGATTGCAGGCCTAGGCGGGCGTGTGGCCGAGCCCTCGGCGACAGCC
GTAGACCTGACCAAGAAGAAGCCGCTGGAGGAGAAAGAGGCGCTGAAAAT
AAACAAAATTGTGCAGATGCTCTCACGGCGGGTCGAGACCAAGCGCGTTT
TCTTCCCTAACGAAATGGAAGAATTGCGAGAGGCCCTCCGGGACGTGGAA
ACTTTACTCAGAGACGATGCGGAGCACCTGAAAAAGGCGCAGCAGGACGC
CGCCGCTCACAACCAGGCGGGGCGCGCCAAGAGCCGCTTCCAAAAGCGGC
GGGAGATGATGATTGAGGAAACGGGTGATTTTGATCCCATCTACGGGAGC
AAAGAAGTGCGTGATCAAATTTACCTTTATCTCTGGTCGCTAGTGAAACG
AGATCCACGCTATCTCGATGCACCTTCGGGGGGCGATGGTATGGAGGGAG
GAGAGGAGGAGTAG
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Synonyms
Publications