NO26G00090, NO26G00090 (gene) Nannochloropsis oceanica

Overview
NameNO26G00090
Unique NameNO26G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr26:25872..27686 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:25872..27686 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G00090 vs. NCBI_GenBank
Match: XP_005855932.1 (hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526] >EKU20433.1 hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.7 bits (535), Expect = 5.200e-51
Identity = 127/223 (56.95%), Postives = 152/223 (68.16%), Query Frame = 0 
Query:   27 IHKPLRRTSTATMERQRSTAAAGHFSLGLPLLLVVVLLPITTLAWQPRVSPSMQQ--------EPS-SKRRAALQRREDSLFHQTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNINRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREATMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWK 241
            I  P RR     + RQ++T      S+ L LL ++V  P +  +WQPR+ P+M+         EPS S  R A + R  +L  Q A  +S  F LSS  F  P P  AA+DK   I+EAR KL  EL+E KNI RLETAI+NADW+TLKQ S+QFDAYLRGDLMGTARKG +DKK+ANSIREATMYSLIKVNKGARASD  QA EGV ELRSNL+AF+SL W+
Sbjct:    6 ISTPHRRECEGGIRRQKTTC-----SISLCLLFLLV-DPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWE 222
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BLAST of NO26G00090 vs. NCBI_GenBank
Match: EWM23042.1 (hypothetical protein Naga_100620g3 [Nannochloropsis gaditana])

HSP 1 Score: 210.3 bits (534), Expect = 6.800e-51
Identity = 128/226 (56.64%), Postives = 153/226 (67.70%), Query Frame = 0 
Query:   24 RTVIHKPLRRTSTATMERQRSTAAAGHFSLGLPLLLVVVLLPITTLAWQPRVSPSMQQ--------EPS-SKRRAALQRREDSLFHQTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNINRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREATMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWK 241
            R  I  P RR     + RQ++T      S+ L LL ++V  P +  +WQPR+ P+M+         EPS S  R A + R  +L  Q A  +S  F LSS  F  P P  AA+DK   I+EAR KL  EL+E KNI RLETAI+NADW+TLKQ S+QFDAYLRGDLMGTARKG +DKK+ANSIREATMYSLIKVNKGARASD  QA EGV ELRSNL+AF+SL W+
Sbjct:   52 RCGISTPHRRECEGGIRRQKTTC-----SISLCLLFLLV-DPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWE 271
The following BLAST results are available for this feature:
BLAST of NO26G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855932.15.200e-5156.95hypothetical protein NGA_0560000 [Nannochloropsis ... [more]
EWM23042.16.800e-5156.64hypothetical protein Naga_100620g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL051nonsL051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006135NSK006135Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00090.1NO26G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612229gene_10627Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100620g3gene7411Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00090.1NO26G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00090 ID=NO26G00090|Name=NO26G00090|organism=Nannochloropsis oceanica|type=gene|length=1815bp
CTTTTTCGTGCCATGCCACGCGCCTCGCTTAGTTGTAATGTATCTGCGGC
ATGGCCTTCACTTTCATTCATCTCTGGCCTGTCTCTGCTAAGAAACGATC
GAGATTATTGCCTGGGCCTGTCCGAAACCAACAGCAGTGTTGACCTCCTC
TCTCCTCGCTTCAGAGTCTGGATGCGGATCATCCAGGCATGATGATTAAC
GTCAACATCTCAAGCAGCCCTTCCATCAACACGACACATACTTTCCTCTC
TCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGACATCCACCGCAA
CAATGGAACGACAACGATCAACGGCAGCCGCAGGGCATTTCTCCCTCGGT
CTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCACCACCTTGGCCTG
GCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGTCCTCCAAGCGCC
GCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCACCAGACCGCTGGG
TTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTAC
GCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTAAGGAGGCAAGGG
ACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATCAACAGGTTAGAA
ACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCAGgtagggagggg
aaaggggggaggaaaggaggaaaggagggagggaggcgaggaagcaggaa
gaagttggggtttatgggtgtatatacatgtatatttaagggaagaagga
gtggctgtcgagcgaggaaaattgagatgtgcaaatggacagacgtgcag
agaggcttgtgtatacctctatccttcattgagcttattccttcccttct
ttctccctgccctctctcctccagGTTTCAAAACAATTTGACGCCTATCT
CCGGGGGGACCTGATGGGCACGGCCCGAAAGGGTGCCCTTGACAAGAAGG
CCGCCAATTCTATTCGAGAGGCCACGATGTACAGCCTCATAAAAgtgtgt
tgttcctccctcccttatcccgttccctcctttctatctttcctccctcc
ctccctccctccctcttcttccttctttatttacctcctccccctgtttt
tccatcctcgccattgtttcaaaatttagcgagtttgctcccgtcttagc
tagccctccctccctccctccctctcccccgccctccccgcctccctccc
ctttagGTCAACAAGGGTGCGCGGGCTTCGGACGCAGCCCAGGCCCAAGA
GGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCTTCCTCAGCTTGCCGT
GGAAGACAGAGGGGGAGGGGGAATGAGCAGAGGGAGGGAGGAAGAGGCAT
AATGGCAGGGGATGGATGAATCCAAAGAATTAATTGCTCGAGACAGTAAT
TGGAAGAGGCGAGAGATTAGGAGCACCAATTTTTCGGGTGGATGAGGCCG
ACCGCCTCTAGAGGATTCTTACAGCTCTAGACTTTGCAATCATTCTTCTC
TTTTTTCCGCACTCTTTTTTCTTCTTCTCTCTTTTGGTGTTTCTCGAGCT
CCCTCGCTCGCGCTCGAGTTCGCTCTCTTGCCCTGTCCTCTTCCTCATTC
CCATGTCTGCCTTCTCCCTCCCTCTCATCCCCAGAACCACACACGACCTC
TTTCCTCCCCATACCCGGAGGTCTCTTTCCATCGCCTGCTATCCCGTGCT
GTACGTGAACGCTTATGTCCCACATTGCAATGCGCCCACACGACCATTAC
TATATCTATGCGCAC
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protein sequence of NO26G00090.1

>NO26G00090.1-protein ID=NO26G00090.1-protein|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MMINVNISSSPSINTTHTFLSQARTVIHKPLRRTSTATMERQRSTAAAGH
FSLGLPLLLVVVLLPITTLAWQPRVSPSMQQEPSSKRRAALQRREDSLFH
QTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNI
NRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREA
TMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWKTEGEGE*
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Synonyms
Publications