NO26G00090.1, NO26G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00090.1
Unique NameNO26G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr26:25872..27686 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:25872..27686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00090.1 vs.
Match: XP_005855932.1 (hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526]; EKU20433.1 hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.7 bits (535), Expect = 5.200e-51
Identity = 127/223 (56.95%), Postives = 152/223 (68.16%), Query Frame = 0 
Query:   27 IHKPLRRTSTATMERQRSTAAAGHFSLGLPLLLVVVLLPITTLAWQPRVSPSMQQ--------EPS-SKRRAALQRREDSLFHQTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNINRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREATMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWK 241
            I  P RR     + RQ++T      S+ L LL ++V  P +  +WQPR+ P+M+         EPS S  R A + R  +L  Q A  +S  F LSS  F  P P  AA+DK   I+EAR KL  EL+E KNI RLETAI+NADW+TLKQ S+QFDAYLRGDLMGTARKG +DKK+ANSIREATMYSLIKVNKGARASD  QA EGV ELRSNL+AF+SL W+
Sbjct:    6 ISTPHRRECEGGIRRQKTTC-----SISLCLLFLLVD-PASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWE 222
The following BLAST results are available for this feature:
BLAST of NO26G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855932.15.200e-5156.95hypothetical protein NGA_0560000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00090NO26G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00090.1NO26G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00090.1.cds1NO26G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00090.1.cds2NO26G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00090.1.cds3NO26G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
CTTTTTCGTGCCATGCCACGCGCCTCGCTTAGTTGTAATGTATCTGCGGC
ATGGCCTTCACTTTCATTCATCTCTGGCCTGTCTCTGCTAAGAAACGATC
GAGATTATTGCCTGGGCCTGTCCGAAACCAACAGCAGTGTTGACCTCCTC
TCTCCTCGCTTCAGAGTCTGGATGCGGATCATCCAGGCATGATGATTAAC
GTCAACATCTCAAGCAGCCCTTCCATCAACACGACACATACTTTCCTCTC
TCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGACATCCACCGCAA
CAATGGAACGACAACGATCAACGGCAGCCGCAGGGCATTTCTCCCTCGGT
CTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCACCACCTTGGCCTG
GCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGTCCTCCAAGCGCC
GCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCACCAGACCGCTGGG
TTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTAC
GCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTAAGGAGGCAAGGG
ACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATCAACAGGTTAGAA
ACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCAGGTTTCAAAACA
ATTTGACGCCTATCTCCGGGGGGACCTGATGGGCACGGCCCGAAAGGGTG
CCCTTGACAAGAAGGCCGCCAATTCTATTCGAGAGGCCACGATGTACAGC
CTCATAAAAGTCAACAAGGGTGCGCGGGCTTCGGACGCAGCCCAGGCCCA
AGAGGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCTTCCTCAGCTTGC
CGTGGAAGACAGAGGGGGAGGGGGAATGAGCAGAGGGAGGGAGGAAGAGG
CATAATGGCAGGGGATGGATGAATCCAAAGAATTAATTGCTCGAGACAGT
AATTGGAAGAGGCGAGAGATTAGGAGCACCAATTTTTCGGGTGGATGAGG
CCGACCGCCTCTAGAGGATTCTTACAGCTCTAGACTTTGCAATCATTCTT
CTCTTTTTTCCGCACTCTTTTTTCTTCTTCTCTCTTTTGGTGTTTCTCGA
GCTCCCTCGCTCGCGCTCGAGTTCGCTCTCTTGCCCTGTCCTCTTCCTCA
TTCCCATGTCTGCCTTCTCCCTCCCTCTCATCCCCAGAACCACACACGAC
CTCTTTCCTCCCCATACCCGGAGGTCTCTTTCCATCGCCTGCTATCCCGT
GCTGTACGTGAACGCTTATGTCCCACATTGCAATGCGCCCACACGACCAT
TACTATATCTATGCGCAC
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protein sequence of NO26G00090.1

>NO26G00090.1-protein ID=NO26G00090.1-protein|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MMINVNISSSPSINTTHTFLSQARTVIHKPLRRTSTATMERQRSTAAAGH
FSLGLPLLLVVVLLPITTLAWQPRVSPSMQQEPSSKRRAALQRREDSLFH
QTAGFASAFFLLSSPSFALPTPVSAAEDKTAEIKEARDKLLIELEEGKNI
NRLETAIQNADWDTLKQVSKQFDAYLRGDLMGTARKGALDKKAANSIREA
TMYSLIKVNKGARASDAAQAQEGVNELRSNLKAFLSLPWKTEGEGE*
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mRNA from alignment at chr26:25872..27686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at chr26:25872..27686- (Nannochloropsis oceanica)
CTTTTTCGTGCCATGCCACGCGCCTCGCTTAGTTGTAATGTATCTGCGGC
ATGGCCTTCACTTTCATTCATCTCTGGCCTGTCTCTGCTAAGAAACGATC
GAGATTATTGCCTGGGCCTGTCCGAAACCAACAGCAGTGTTGACCTCCTC
TCTCCTCGCTTCAGAGTCTGGATGCGGATCATCCAGGCATGATGATTAAC
GTCAACATCTCAAGCAGCCCTTCCATCAACACGACACATACTTTCCTCTC
TCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGACATCCACCGCAA
CAATGGAACGACAACGATCAACGGCAGCCGCAGGGCATTTCTCCCTCGGT
CTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCACCACCTTGGCCTG
GCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGTCCTCCAAGCGCC
GCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCACCAGACCGCTGGG
TTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTTTGCCCTGCCTAC
GCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTAAGGAGGCAAGGG
ACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATCAACAGGTTAGAA
ACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCAGGTAGGGAGGGG
AAAGGGGGGAGGAAAGGAGGAAAGGAGGGAGGGAGGCGAGGAAGCAGGAA
GAAGTTGGGGTTTATGGGTGTATATACATGTATATTTAAGGGAAGAAGGA
GTGGCTGTCGAGCGAGGAAAATTGAGATGTGCAAATGGACAGACGTGCAG
AGAGGCTTGTGTATACCTCTATCCTTCATTGAGCTTATTCCTTCCCTTCT
TTCTCCCTGCCCTCTCTCCTCCAGGTTTCAAAACAATTTGACGCCTATCT
CCGGGGGGACCTGATGGGCACGGCCCGAAAGGGTGCCCTTGACAAGAAGG
CCGCCAATTCTATTCGAGAGGCCACGATGTACAGCCTCATAAAAGTGTGT
TGTTCCTCCCTCCCTTATCCCGTTCCCTCCTTTCTATCTTTCCTCCCTCC
CTCCCTCCCTCCCTCTTCTTCCTTCTTTATTTACCTCCTCCCCCTGTTTT
TCCATCCTCGCCATTGTTTCAAAATTTAGCGAGTTTGCTCCCGTCTTAGC
TAGCCCTCCCTCCCTCCCTCCCTCTCCCCCGCCCTCCCCGCCTCCCTCCC
CTTTAGGTCAACAAGGGTGCGCGGGCTTCGGACGCAGCCCAGGCCCAAGA
GGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCTTCCTCAGCTTGCCGT
GGAAGACAGAGGGGGAGGGGGAATGAGCAGAGGGAGGGAGGAAGAGGCAT
AATGGCAGGGGATGGATGAATCCAAAGAATTAATTGCTCGAGACAGTAAT
TGGAAGAGGCGAGAGATTAGGAGCACCAATTTTTCGGGTGGATGAGGCCG
ACCGCCTCTAGAGGATTCTTACAGCTCTAGACTTTGCAATCATTCTTCTC
TTTTTTCCGCACTCTTTTTTCTTCTTCTCTCTTTTGGTGTTTCTCGAGCT
CCCTCGCTCGCGCTCGAGTTCGCTCTCTTGCCCTGTCCTCTTCCTCATTC
CCATGTCTGCCTTCTCCCTCCCTCTCATCCCCAGAACCACACACGACCTC
TTTCCTCCCCATACCCGGAGGTCTCTTTCCATCGCCTGCTATCCCGTGCT
GTACGTGAACGCTTATGTCCCACATTGCAATGCGCCCACACGACCATTAC
TATATCTATGCGCAC
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Coding sequence (CDS) from alignment at chr26:25872..27686-

>NO26G00090.1 ID=NO26G00090.1|Name=NO26G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr26:25872..27686- (Nannochloropsis oceanica)
ATGATGATTAACGTCAACATCTCAAGCAGCCCTTCCATCAACACGACACA
TACTTTCCTCTCTCAAGCACGCACAGTCATCCACAAGCCACTACGGCGGA
CATCCACCGCAACAATGGAACGACAACGATCAACGGCAGCCGCAGGGCAT
TTCTCCCTCGGTCTTCCGCTTCTCCTCGTCGTCGTCCTTCTTCCCATCAC
CACCTTGGCCTGGCAGCCACGCGTCAGCCCATCCATGCAGCAGGAACCGT
CCTCCAAGCGCCGCGCTGCCTTGCAAAGAAGAGAAGACTCCCTCTTCCAC
CAGACCGCTGGGTTTGCTAGTGCTTTTTTTCTCCTTTCATCCCCGTCCTT
TGCCCTGCCTACGCCCGTCTCGGCAGCCGAGGACAAGACTGCGGAGATTA
AGGAGGCAAGGGACAAGCTTCTGATCGAGTTGGAGGAGGGAAAGAATATC
AACAGGTTAGAAACAGCCATTCAGAATGCGGATTGGGACACTTTGAAGCA
GGTTTCAAAACAATTTGACGCCTATCTCCGGGGGGACCTGATGGGCACGG
CCCGAAAGGGTGCCCTTGACAAGAAGGCCGCCAATTCTATTCGAGAGGCC
ACGATGTACAGCCTCATAAAAGTCAACAAGGGTGCGCGGGCTTCGGACGC
AGCCCAGGCCCAAGAGGGGGTGAATGAGCTTCGCAGCAACCTCAAAGCCT
TCCTCAGCTTGCCGTGGAAGACAGAGGGGGAGGGGGAATGA
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Synonyms
Publications