NO26G00020, NO26G00020 (gene) Nannochloropsis oceanica

Overview
NameNO26G00020
Unique NameNO26G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length884
Alignment locationchr26:4497..5380 +

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Properties
Property NameValue
DescriptionWinged helix-turn-helix transcription repressor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:4497..5380 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR021660DUF3253
Homology
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: EWM26025.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 1.200e-24
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = 0 
Query:   89 SATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLR 164
            S+TILALT +RG  +TICPSEVPR+LCPS WRAYMPRVRAVAIRLAKEG IDITQ+GQVV VE E DI+GPIRLR
Sbjct:   42 SSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_104419980.1 (DUF3253 domain-containing protein [Lewinella xylanilytica] >PPK85480.1 uncharacterized protein DUF3253 [Lewinella xylanilytica])

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-13
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 0 
Query:   84 TDAQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRK 167
            TD +I A ILA T+ RGT KT+CPSEV R LCP  WR  M RVR  A  LA +GRIDI Q G    V+ ++D  GP+RLR RK
Sbjct:    6 TDTRIDAEILAQTEARGTDKTVCPSEVARGLCPDDWRPLMERVRDRARALAAKGRIDICQSG--TPVDPDKDWTGPVRLRFRK 86
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BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_106872847.1 (MULTISPECIES: DUF3253 domain-containing protein [unclassified Cyanobacteria (miscellaneous)] >PSN12121.1 DUF3253 domain-containing protein [filamentous cyanobacterium CCT1] >PSN76433.1 DUF3253 domain-containing protein [filamentous cyanobacterium CCP4])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:   88 ISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQE 169
            I AT+L L  +RG  KTICPSEV R+L P  WR+ MP VRA+A  L  EG I +TQKGQVV     +  +GPIR R  K E
Sbjct:    8 IRATLLDLVAQRGPDKTICPSEVARILSPGDWRSLMPTVRAIAQELEAEGHIVVTQKGQVV---DPKHARGPIRYRQAKME 85
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_083709791.1 (DUF3253 domain-containing protein [Williamsia sterculiae] >SIS03946.1 Protein of unknown function [Williamsia sterculiae])

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-10
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 0 
Query:   84 TDAQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQ 168
            +D +I+ T+L L D+R    +ICPS+V R L    WRA MP VR VA RLA +GR ++TQ+G+VV  E+    +GPIR+R  +Q
Sbjct:    7 SDKRIADTLLDLLDRRSPASSICPSDVARALRDDDWRALMPAVRRVADRLAADGRCEVTQRGEVVEAES---ARGPIRIRRPRQ 87
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: XP_024394552.1 (uncharacterized protein LOC112291424 [Physcomitrella patens] >PNR40470.1 hypothetical protein PHYPA_017872 [Physcomitrella patens])

HSP 1 Score: 75.5 bits (184), Expect = 2.200e-10
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 0 
Query:   87 QISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRL 165
            ++  TIL L  KR    TICPSE PR L P  WR  M   R VA +LA  GRI+ITQKG+  V+  E+ ++GPIRLRL
Sbjct:   39 ELRVTILELLGKRAPAATICPSEAPRALHPENWRDLMDITREVARQLALSGRIEITQKGR--VIHPEDPLRGPIRLRL 114
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_056850239.1 (DUF3253 domain-containing protein [Pedobacter sp. Leaf41] >KQN35105.1 hypothetical protein ASE92_10800 [Pedobacter sp. Leaf41])

HSP 1 Score: 73.6 bits (179), Expect = 8.500e-10
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:   86 AQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQE 169
            ++IS TILA  DKRG  K+ CPSE+ R+L    WR  M +VR VAI L +EG++ ITQKG  + V   + I+GP+R+++ + E
Sbjct:    5 SEISKTILAEADKRGPDKSTCPSEISRMLFGDDWRKEMGKVREVAIGLHREGKVVITQKGVPIDV---DHIKGPVRIKISQNE 84
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_044150987.1 (DUF3253 domain-containing protein [Lyngbya confervoides])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 0 
Query:   84 TDAQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQE 169
            ++ QI   ++ L   RG  KTICPSEV R L    WR+ MP+VR V + LA+ G I +TQKGQVV  +T    +GPIR RL   E
Sbjct:    4 SEQQIQDCLMQLVRDRGPEKTICPSEVARALSADDWRSLMPQVRTVGMALAQAGAIAVTQKGQVVDPQT---AKGPIRYRLLHHE 85
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_087031499.1 (DUF3253 domain-containing protein [Arthrobacter agilis] >OUM40678.1 S-adenosylmethionine tRNA ribosyltransferase [Arthrobacter agilis] >PPB45288.1 DUF3253 domain-containing protein [Arthrobacter agilis])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:   84 TDAQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQEG 170
            +DA + A IL + ++RG  KT+CPS+  R +   +WR  MP  R +A  L  EGR+D+TQ G+ V    E D +GPIR+R R   G
Sbjct:    6 SDAALRAEILRIAEQRGPDKTLCPSDAARSIGGESWRDLMPAARRIAFELTGEGRVDVTQHGEPV----EPDARGPIRIRRRVPRG 87
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_009556009.1 (DUF3253 domain-containing protein [Oscillatoriales cyanobacterium JSC-12] >EKQ69097.1 Protein of unknown function (DUF3253) [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:   86 AQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRLRKQ 168
            A I  TIL    +RG  KTICPSEV R+L    WR+ M  VR+V + L K+G I++TQ+G VV ++T   ++GPIR R+ ++
Sbjct:    5 ALIRKTILEKVQQRGLDKTICPSEVARMLGGEEWRSLMDDVRSVGLDLVKQGHIEVTQQGNVVDIQT---VKGPIRFRITQK 83
[Close]
BLAST of NO26G00020 vs. NCBI_GenBank
Match: WP_088301129.1 (DUF3253 domain-containing protein [Pedobacter sp. AJM] >OWK71371.1 hypothetical protein CBW18_09950 [Pedobacter sp. AJM])

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0 
Query:   88 ISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLRL 165
            ISATIL + ++RG  K+ CPSE+ R L P  WR +M  +R VAI L ++G+I ITQKG  V +   + I+GPIR+++
Sbjct:    7 ISATILLMAEQRGPEKSTCPSEIARRLYPDDWRKHMKNIREVAIGLHQQGKIMITQKGMPVDI---DHIKGPIRIKI 80
The following BLAST results are available for this feature:
BLAST of NO26G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26025.11.200e-2481.33Winged helix-turn-helix transcription repressor [N... [more]
WP_104419980.11.300e-1356.63DUF3253 domain-containing protein [Lewinella xylan... [more]
WP_106872847.12.000e-1154.32MULTISPECIES: DUF3253 domain-containing protein [u... [more]
WP_083709791.11.700e-1047.62DUF3253 domain-containing protein [Williamsia ster... [more]
XP_024394552.12.200e-1052.56uncharacterized protein LOC112291424 [Physcomitrel... [more]
WP_056850239.18.500e-1046.99DUF3253 domain-containing protein [Pedobacter sp. ... [more]
WP_044150987.11.100e-948.24DUF3253 domain-containing protein [Lyngbya conferv... [more]
WP_087031499.11.100e-943.02DUF3253 domain-containing protein [Arthrobacter ag... [more]
WP_009556009.11.500e-946.34DUF3253 domain-containing protein [Oscillatoriales... [more]
WP_088301129.11.900e-948.05DUF3253 domain-containing protein [Pedobacter sp. ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00020.1NO26G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643451gene_10634Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00020.1NO26G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00020 ID=NO26G00020|Name=NO26G00020|organism=Nannochloropsis oceanica|type=gene|length=884bp
TTTCTTTTTACATCCGTGTCTGGGGCACGCAGCAGCTTTCTTATTCTGCC
AAAAGGATTGGTAGTCTTGAGATCTACCATCTTCCTGATCTCCTTAATCC
CCCTCTTGCCCGACCTGCTTTCCCTTTTTCCGACCTATGATTGTCTATCA
CCTTGTGTCCCCTTCCCCCTTCCTGCCCTTCCTGTCCTTTATCTCCTTTT
ATGCTCAATGGGCCGCCCTCCTATAATCGCTATGCTGAGAGCGACAAAAC
CGACTGTGAAGACAATGAAGACTTCTACCTGCTGTATGCAGCCAATTTGG
GACGGCGCATCGCTGCCCCTCTTCACTGGCAATGCGATTACCGTAAAAAT
TTCATAACCTCCCCACAACACGCACACAGCATGGCAAGAAAAACAAAATC
CAACTCTTCCTCCAACAAGCATACGTCCTCCTCCTCCTCGTCTGGACCGA
CTGATGCCCAGATTTCAGCTACAATTCTGGCGCTAACTGACAAGCGGGGC
ACAACTAAAACTATCTGTCCCTCAGAGGTGCCCCGTTTGCTGTGCCCTTC
GACCTGGCGAGCGTACATGCCGCGGGTGCGTGCCGTGGCCATCCGCTTGG
CCAAGGAAGGGCGTATCGACATAACACAAAAGGGGCAAGTTGTGGTGGTG
GAAACAGAGGAGGATATTCAAGGGCCGATTCGTTTAAGACTGCGAAAGCA
GGAGGGTATGGAGATTCGGAAGCAGGAGGGCATGGAGGAGACTGAGCTGA
AGGACAGAATAGAAAAAGGTGGCACAAACAGTAAGCGGGATTCACCGGCT
GCGCCTATAGAGCACTTTGTTGATAGAATAAAATGAAAATAGCATGGGCG
ATCAAGACCTGATCAAAGTCAATCAGGCTGCCTT
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protein sequence of NO26G00020.1

>NO26G00020.1-protein ID=NO26G00020.1-protein|Name=NO26G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MLNGPPSYNRYAESDKTDCEDNEDFYLLYAANLGRRIAAPLHWQCDYRKN
FITSPQHAHSMARKTKSNSSSNKHTSSSSSSGPTDAQISATILALTDKRG
TTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVV
ETEEDIQGPIRLRLRKQEGMEIRKQEGMEETELKDRIEKGGTNSKRDSPA
APIEHFVDRIK*
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Synonyms
Publications