NO26G00020.1, NO26G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00020.1
Unique NameNO26G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length884
Alignment locationchr26:4497..5380 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:4497..5380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00020.1 vs.
Match: EWM26025.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 6.300e-29
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0 
Query:   71 SNKHTSSSSSSGPTDAQISATILALTDKRGTTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVVETEEDIQGPIRLR 164
            S+  TSSSS+S PTD+QIS+TILALT +RG  +TICPSEVPR+LCPS WRAYMPRVRAVAIRLAKEG IDITQ+GQVV VE E DI+GPIRLR
Sbjct:   24 SSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
The following BLAST results are available for this feature:
BLAST of NO26G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26025.16.300e-2978.49Winged helix-turn-helix transcription repressor [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00020NO26G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00020.1NO26G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00020.1.cds1NO26G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00020.1 ID=NO26G00020.1|Name=NO26G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
TTTCTTTTTACATCCGTGTCTGGGGCACGCAGCAGCTTTCTTATTCTGCC
AAAAGGATTGGTAGTCTTGAGATCTACCATCTTCCTGATCTCCTTAATCC
CCCTCTTGCCCGACCTGCTTTCCCTTTTTCCGACCTATGATTGTCTATCA
CCTTGTGTCCCCTTCCCCCTTCCTGCCCTTCCTGTCCTTTATCTCCTTTT
ATGCTCAATGGGCCGCCCTCCTATAATCGCTATGCTGAGAGCGACAAAAC
CGACTGTGAAGACAATGAAGACTTCTACCTGCTGTATGCAGCCAATTTGG
GACGGCGCATCGCTGCCCCTCTTCACTGGCAATGCGATTACCGTAAAAAT
TTCATAACCTCCCCACAACACGCACACAGCATGGCAAGAAAAACAAAATC
CAACTCTTCCTCCAACAAGCATACGTCCTCCTCCTCCTCGTCTGGACCGA
CTGATGCCCAGATTTCAGCTACAATTCTGGCGCTAACTGACAAGCGGGGC
ACAACTAAAACTATCTGTCCCTCAGAGGTGCCCCGTTTGCTGTGCCCTTC
GACCTGGCGAGCGTACATGCCGCGGGTGCGTGCCGTGGCCATCCGCTTGG
CCAAGGAAGGGCGTATCGACATAACACAAAAGGGGCAAGTTGTGGTGGTG
GAAACAGAGGAGGATATTCAAGGGCCGATTCGTTTAAGACTGCGAAAGCA
GGAGGGTATGGAGATTCGGAAGCAGGAGGGCATGGAGGAGACTGAGCTGA
AGGACAGAATAGAAAAAGGTGGCACAAACAGTAAGCGGGATTCACCGGCT
GCGCCTATAGAGCACTTTGTTGATAGAATAAAATGAAAATAGCATGGGCG
ATCAAGACCTGATCAAAGTCAATCAGGCTGCCTT
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protein sequence of NO26G00020.1

>NO26G00020.1-protein ID=NO26G00020.1-protein|Name=NO26G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MLNGPPSYNRYAESDKTDCEDNEDFYLLYAANLGRRIAAPLHWQCDYRKN
FITSPQHAHSMARKTKSNSSSNKHTSSSSSSGPTDAQISATILALTDKRG
TTKTICPSEVPRLLCPSTWRAYMPRVRAVAIRLAKEGRIDITQKGQVVVV
ETEEDIQGPIRLRLRKQEGMEIRKQEGMEETELKDRIEKGGTNSKRDSPA
APIEHFVDRIK*
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mRNA from alignment at chr26:4497..5380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00020.1 ID=NO26G00020.1|Name=NO26G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at chr26:4497..5380+ (Nannochloropsis oceanica)
TTTCTTTTTACATCCGTGTCTGGGGCACGCAGCAGCTTTCTTATTCTGCC
AAAAGGATTGGTAGTCTTGAGATCTACCATCTTCCTGATCTCCTTAATCC
CCCTCTTGCCCGACCTGCTTTCCCTTTTTCCGACCTATGATTGTCTATCA
CCTTGTGTCCCCTTCCCCCTTCCTGCCCTTCCTGTCCTTTATCTCCTTTT
ATGCTCAATGGGCCGCCCTCCTATAATCGCTATGCTGAGAGCGACAAAAC
CGACTGTGAAGACAATGAAGACTTCTACCTGCTGTATGCAGCCAATTTGG
GACGGCGCATCGCTGCCCCTCTTCACTGGCAATGCGATTACCGTAAAAAT
TTCATAACCTCCCCACAACACGCACACAGCATGGCAAGAAAAACAAAATC
CAACTCTTCCTCCAACAAGCATACGTCCTCCTCCTCCTCGTCTGGACCGA
CTGATGCCCAGATTTCAGCTACAATTCTGGCGCTAACTGACAAGCGGGGC
ACAACTAAAACTATCTGTCCCTCAGAGGTGCCCCGTTTGCTGTGCCCTTC
GACCTGGCGAGCGTACATGCCGCGGGTGCGTGCCGTGGCCATCCGCTTGG
CCAAGGAAGGGCGTATCGACATAACACAAAAGGGGCAAGTTGTGGTGGTG
GAAACAGAGGAGGATATTCAAGGGCCGATTCGTTTAAGACTGCGAAAGCA
GGAGGGTATGGAGATTCGGAAGCAGGAGGGCATGGAGGAGACTGAGCTGA
AGGACAGAATAGAAAAAGGTGGCACAAACAGTAAGCGGGATTCACCGGCT
GCGCCTATAGAGCACTTTGTTGATAGAATAAAATGAAAATAGCATGGGCG
ATCAAGACCTGATCAAAGTCAATCAGGCTGCCTT
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Coding sequence (CDS) from alignment at chr26:4497..5380+

>NO26G00020.1 ID=NO26G00020.1|Name=NO26G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at chr26:4497..5380+ (Nannochloropsis oceanica)
ATGCTCAATGGGCCGCCCTCCTATAATCGCTATGCTGAGAGCGACAAAAC
CGACTGTGAAGACAATGAAGACTTCTACCTGCTGTATGCAGCCAATTTGG
GACGGCGCATCGCTGCCCCTCTTCACTGGCAATGCGATTACCGTAAAAAT
TTCATAACCTCCCCACAACACGCACACAGCATGGCAAGAAAAACAAAATC
CAACTCTTCCTCCAACAAGCATACGTCCTCCTCCTCCTCGTCTGGACCGA
CTGATGCCCAGATTTCAGCTACAATTCTGGCGCTAACTGACAAGCGGGGC
ACAACTAAAACTATCTGTCCCTCAGAGGTGCCCCGTTTGCTGTGCCCTTC
GACCTGGCGAGCGTACATGCCGCGGGTGCGTGCCGTGGCCATCCGCTTGG
CCAAGGAAGGGCGTATCGACATAACACAAAAGGGGCAAGTTGTGGTGGTG
GAAACAGAGGAGGATATTCAAGGGCCGATTCGTTTAAGACTGCGAAAGCA
GGAGGGTATGGAGATTCGGAAGCAGGAGGGCATGGAGGAGACTGAGCTGA
AGGACAGAATAGAAAAAGGTGGCACAAACAGTAAGCGGGATTCACCGGCT
GCGCCTATAGAGCACTTTGTTGATAGAATAAAATGA
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Synonyms
Publications