NO25G02080, NO25G02080 (gene) Nannochloropsis oceanica

Overview
NameNO25G02080
Unique NameNO25G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2824
Alignment locationchr25:654535..657358 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:654535..657358 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
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BLAST of NO25G02080 vs. NCBI_GenBank
Match: XP_005854051.1 (hypothetical protein NGA_0110902 [Nannochloropsis gaditana CCMP526] >XP_005855219.1 hypothetical protein NGA_0110901 [Nannochloropsis gaditana CCMP526] >EKU21141.1 hypothetical protein NGA_0110901 [Nannochloropsis gaditana CCMP526] >EKU22310.1 hypothetical protein NGA_0110902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.4 bits (625), Expect = 5.700e-61
Identity = 198/429 (46.15%), Postives = 231/429 (53.85%), Query Frame = 0 
Query:  186 CSSRVNTKAVDAWLQEMGSAAFAIASQSPPWSFRQFSTCLPAEAAATESYPPLPEPGLQGLKTLCILAKGSILFLQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATRIYLKTLAVHGQLSLRPGNVRSKQETAVKKIIDALRKHQEAARLVPDWTVRLLLVAGRLLCSLGRRSDAVVLLQMHLPLLEALSMAAPLAVAYLWLQYTQWAYYDLGAWMDKPLEEQREAAAKVEAACRKALMLLHGADVMTRS---------------------LXXXXXXXXXXXXXXXXXXXXXXXXXLYAEALLATASFRLADLLL----------ERGAVSDALELCRISLHNAAPVHFPTLAVYLAAALQALGKGGKTEAAIEIRMEKKLRQVMAEKMKRRDPSCSTPLLPFPRSASLLNMHGLEDMWNLPTE 584
            C   + T+AVDAWL EMG AAF  A+ S P +FR      P     T     LP+P L GLKTL ILAKGSI  L+                               VA R+YLK LAVH QL       R KQ+   K I++AL  +QEAA  VP WTVRLL++AGRLL SL +R  A+ LL+ +LPLL+A  MAAPL  AYLWL YTQ  YYDLGA  D+   +Q EAAA V    R+AL+LL+ A  + R                       XXXXXXXXXXXXXXXXXX          EAL+ATASFRLADLLL          E  A  +AL LCR  L NAAP+HF +L VYLA AL+A G+GG  EAA E+  E                S S      PRSASLLNM G E++W LP E
Sbjct:    2 CGLGLTTQAVDAWLLEMGRAAF--AASSAPAAFRFLE---PRTTVRTLDEIHLPDPALDGLKTLSILAKGSIEHLR----------RKQKQCRPGCSSPSSSPSTNSVAARMYLKALAVHAQLCSGHEESRVKQKVVAKSILEALTSYQEAALHVPTWTVRLLVIAGRLLTSLKQRPQAIALLETYLPLLDASPMAAPLIKAYLWLYYTQLKYYDLGACWDRAFRDQGEAAAHVAVVFRQALLLLNDAREINRKPRPSSVSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVFFEASWQMEALVATASFRLADLLLSPLSGSSGRIEPAAAREALALCRTCLQNAAPLHFRSLRVYLATALRAAGEGGVEEAAAEVEAEXXXXXXXXXXXXXXXXSPS-----LPRSASLLNMRGRENVWLLPEE 410
The following BLAST results are available for this feature:
BLAST of NO25G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854051.15.700e-6146.15hypothetical protein NGA_0110902 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006424NSK006424Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G02080.1NO25G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604192gene_8832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G02080.1NO25G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G02080 ID=NO25G02080|Name=NO25G02080|organism=Nannochloropsis oceanica|type=gene|length=2824bp
CGGCGACGCCATACTTACGCGGTCACACGCTTTGCTTGCCCTCGGCATTA
TTTTACAAAATTTCAAGCAAGAGGGATGTGGGCAAAAATTTCCTACCTGT
CCTTGACACCCCCACCTTCGACCTTTCGAATGTTTTGAGGACCTCAATTG
CATAACGGAGAGAAAGATGTGTCACTTGTACTTGTGGCCTTACCTTTTTT
ACCAGCAGCCATAGGAGCTTGTACGAATATATTGACCACGCTTTCCACAA
AGAATGCAAAAAACCGTCGCGTCGTTTTCTTGTCATGTCTTGCATACTTC
CATGGGCAGTAGCGCCCCCACCCCTTCATCCCATTGCCCTCTTGTCCTGC
CCCTCTTATTACTCATCGTATATTATAAGCAGATTCTTAACCTTGCTCCC
CACTCACAAAACACCTATGTCAAACAAGACACCAGCGCCACGACGATGAC
TCCGAGCGCTGCCGCCACCTCGTCCTCGCCCGGTACGGGGAGGTGGGGCC
TGCAAGATGCCTTTCACGACATACAGAACGCGATTTCGGAAGGATTGGCC
TGCACTCATTGTCAAGCCTGCCACTACAACTTGGCAGCCTGCTCGTGCTG
CTTATCAACATTTTACTGCGgtgcgtaagaagaaaatgtgatgccggaaa
atcgatagaaagtccttcgtcctttcccccctgactcccgaatggttaac
cctcattttcctcatcgctctcatcttaacaatagGCAAAGATTGTCAAC
AAGCACACTGGTTGGTCGCACACCAGCGAGAATGCTCCGCAATGGCACAC
CACGGCTTCCAAAACTTCATGCGGGCCATGGAGGAGCAGCAAGAGCAGCA
GCGGGAGCACCACCAGATGAAGGCCTGTCCACCCTCGGCTGCCGGCAATA
CTACGAGAGGGTGGCAACAACCATGCAGTTCGAGGGTTAATACCAAGGCT
GTAGATGCTTGGCTGCAGGAAATGGGTAGTGCGGCCTTTGCAATTGCCTC
CCAGTCCCCCCCCTGGTCCTTCCGCCAATTCTCTACCTGCTTGCCCGCAG
AAGCCGCCGCCACTGAAAGTTATCCACCTTTGCCAGAGCCCGGCTTGCAA
GGCTTAAAAACCCTTTGCATTCTAGCCAAGGGTAGCATTCTATTTTTGCA
GGGGCAGGAGCAACAACGGCAACTGTCCCTTGCCTCCTCTCCCTCCGCCT
CCCCTCAGTCCTCCTTCTCCTCCTCTTCCACCTCGACAGACTCAGTCGCT
ACCCGCATATACCTAAAAACGCTAGCCGTCCACGGACAGCTCTCTCTCCG
ACCAGGTAACGTCCGGTCCAAGCAGGAGACAGCCGTTAAGAAGATCATCG
ATGCCCTACGCAAGCATCAGGAAGCAGCCCGCCTCGTCCCCGACTGGACT
GTTCGCCTCCTCCTCGTGGCGGGCCGGTTACTCTGCTCCCTAGGTCGACG
CTCAGATGCCGTGGTGCTGCTTCAAATGCACCTCCCTCTTCTGGAGGCCT
TGTCCATGGCTGCGCCTCTAGCTGTGGCCTACCTGTGGCTGCAATACACG
CAGTGGGCATACTACGATCTGGGTGCCTGGATGGACAAGCCCCTCGAGGA
GCAGCGGGAGGCAGCCGCCAAAGTCGAAGCGGCCTGTCGCAAGGCTTTGA
TGCTCTTACACGGAGCCGATGTCATGACTAGATCCCTCTCCTCCTCGTCG
TCCTCCTCGTCGTCCTCCTCGTCCTGCTCCTCGTCCGCTTTGCACTCTTC
TCCCCGCAGATCTCTTTACGCAGAGGCCTTGTTAGCAACGGCAAGTTTCC
GGCTCGCCGATCTACTCCTTGAGCGAGGAGCAGTATCAGACGCCCTCGAA
CTATGTCGCATCTCCCTTCATAACGCCGCGCCCGTCCACTTTCCCACCCT
GGCAGTGTACCTGGCAGCCGCATTGCAAGCACTGGGGAAGGGCGGAAAGA
CAGAAGCAGCAATCGAGATTAGAATGGAGAAGAAACTCCGGCAGGTTATG
GCTGAGAAAATGAAGCGGCGTGACCCGTCCTGCTCCACTCCTTTGCTTCC
TTTCCCTCGCTCGGCATCGCTCTTGAACATGCATGGGTTGGAGGACATGT
GGAATTTGCCTACCGAGCCGCAGCTGCTCATTGACAATCACGATCATCAC
CACCACCTACCTCAAGTGCACCGTCGCTTTGAACAGCACCATCGGCAGCA
GCAGCAACAGCGGCACGAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGAATCAGATTGAATATTCCGAGAACAGAAAAACATAAA
GAAACGCAAGCCAAAACGGAGGCTGTTGCCATGGCCGTGTGTGGTGAGAA
AGAATTGGAGAGGGAAGGAAGGAAAGAAACCCACGTGGCCATTCCTCCTT
CTATCTGTACAGCCCGTCCCAGGCCTGCGTCAGCGTCTCCGTCTCCTGAG
TCTGATGGTTCAAACGAAAATAATTTTTCAGCGGACGTCCCTCCCCAGAA
GCGTCGCCGCAGCCAGCGCCCTCACATTCTCGACCAACTTGCCTGCTGTG
TGGCGCTGCCCTGGTGGGCGGTTACTGCCCATGGCTAATAGTGACGACCG
ACCCCAAGATTTACACATAAGAAAACCAGATACTAAAGGGCCTCTTGGGC
TGGAAAAGGTGTATTATACAGCAGAAATGTACAAAAGAGAACCACAACCT
GAGCCTGAATCTAAGAATAATGAGAGGAAGGAATGCGTGTGCATGCACTG
TGCCCAGTGAAGAAAGTATATAGTCCCCACTACCTACAAAGCAAGAGAAA
ACAAGCAATTTCAACGGAGAAAAG
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protein sequence of NO25G02080.1

>NO25G02080.1-protein ID=NO25G02080.1-protein|Name=NO25G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MQKTVASFSCHVLHTSMGSSAPTPSSHCPLVLPLLLLIVYYKQILNLAPH
SQNTYVKQDTSATTMTPSAAATSSSPGTGRWGLQDAFHDIQNAISEGLAC
THCQACHYNLAACSCCLSTFYCGKDCQQAHWLVAHQRECSAMAHHGFQNF
MRAMEEQQEQQREHHQMKACPPSAAGNTTRGWQQPCSSRVNTKAVDAWLQ
EMGSAAFAIASQSPPWSFRQFSTCLPAEAAATESYPPLPEPGLQGLKTLC
ILAKGSILFLQGQEQQRQLSLASSPSASPQSSFSSSSTSTDSVATRIYLK
TLAVHGQLSLRPGNVRSKQETAVKKIIDALRKHQEAARLVPDWTVRLLLV
AGRLLCSLGRRSDAVVLLQMHLPLLEALSMAAPLAVAYLWLQYTQWAYYD
LGAWMDKPLEEQREAAAKVEAACRKALMLLHGADVMTRSLSSSSSSSSSS
SSCSSSALHSSPRRSLYAEALLATASFRLADLLLERGAVSDALELCRISL
HNAAPVHFPTLAVYLAAALQALGKGGKTEAAIEIRMEKKLRQVMAEKMKR
RDPSCSTPLLPFPRSASLLNMHGLEDMWNLPTEPQLLIDNHDHHHHLPQV
HRRFEQHHRQQQQQRHEQQRQQQQQQQQQQQRIRLNIPRTEKHKETQAKT
EAVAMAVCGEKELEREGRKETHVAIPPSICTARPRPASASPSPESDGSNE
NNFSADVPPQKRRRSQRPHILDQLACCVALPWWAVTAHG*
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Synonyms
Publications