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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:654535..657358 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G02080.1 vs.
Match: XP_005854051.1 (hypothetical protein NGA_0110902 [Nannochloropsis gaditana CCMP526]; XP_005855219.1 hypothetical protein NGA_0110901 [Nannochloropsis gaditana CCMP526]; EKU21141.1 hypothetical protein NGA_0110901 [Nannochloropsis gaditana CCMP526]; EKU22310.1 hypothetical protein NGA_0110902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 268.1 bits (684), Expect = 8.200e-68 Identity = 247/605 (40.83%), Postives = 320/605 (52.89%), Query Frame = 0
Query: 186 CSSRVNTKAVDAWLQEMGSAAFAIASQSPPWSFRQFSTCLPAEAAATESYPPLPEPGLQGLKTLCILAKGSILFLQGQEQQRQLSLASSPSASPQSSFSSSSTSTDSVATRIYLKTLAVHGQLSLRPGNVRSKQETAVKKIIDALRKHQEAARLVPDWTVRLLLVAGRLLCSLGRRSDAVVLLQMHLPLLEALSMAAPLAVAYLWLQYTQWAYYDLGAWMDKPLEEQREAAAKVEAACRKALMLLHGADVMTR-----SLSSSSSSSSSSSSC------------SSSALHSSP----RRSLYAEALLATASFRLADLLL----------ERGAVSDALELCRISLHNAAPVHFPTLAVYLAAALQALGKGGKTEAAIEIRMEKKLRQVMAEKMKRRDPSCSTPLLPFPRSASLLNMHGLEDMWNLPTEPQLLIDNHDHHHHLPQVHRRFEQHHRQQQQQRHEQQRQQQQQQQQQQQRIR----------LNIPRTEKHKETQAKTEAVAMAVCGEKELEREGRKETHVAIPPSICTARPRPASASPSPESDGSN-ENNFSAD---------VPPQKRRRSQRPHILDQLACCVALPWWAVTAHG 740
C + T+AVDAWL EMG AAFA +S + F + P T LP+P L GLKTL ILAKGSI L+ +++Q + SSPS+SP ST+SVA R+YLK LAVH QL R KQ+ K I++AL +QEAA VP WTVRLL++AGRLL SL +R A+ LL+ +LPLL+A MAAPL AYLWL YTQ YYDLGA D+ +Q EAAA V R+AL+LL+ A + R S+S+SS+S +SS S S S+ SSP S EAL+ATASFRLADLLL E A +AL LCR L NAAP+HF +L VYLA AL+A G+GG EAA E+ E+ R A + ++ S S+P L PRSASLLNM G E++W LP E + +H + QQ + Q +Q + I L+IPR+E + + + V + + RK+ VA + ARPRP ++ P E G +N D VPP KR R+Q + L C A+ W AV+A+G
Sbjct: 2 CGLGLTTQAVDAWLLEMGRAAFAASSAPAAFRFLE-----PRTTVRTLDEIHLPDPALDGLKTLSILAKGSIEHLRRKQKQCRPG-CSSPSSSP---------STNSVAARMYLKALAVHAQLCSGHEESRVKQKVVAKSILEALTSYQEAALHVPTWTVRLLVIAGRLLTSLKQRPQAIALLETYLPLLDASPMAAPLIKAYLWLYYTQLKYYDLGACWDRAFRDQGEAAAHVAVVFRQALLLLNDAREINRKPRPSSVSTSSTSFNSSPSTSPPCSPMPSPPPSPSSSPSSPVVFFEASWQMEALVATASFRLADLLLSPLSGSSGRIEPAAAREALALCRTCLQNAAPLHFRSLRVYLATALRAAGEGGVEEAAAEVEAERARR---AGREGGKERSSSSPSL--PRSASLLNMRGRENVWLLPEESWWAMCGRFYHKYKEPDPALQAPCTSPQQASLPVLRSPQALEQAPRHHSISPPRSPESCRDLDIPRSEGEGRVEVRRDTVVLQAPTPRP-----RKDLTVA--ALLRAARPRPLASPPKLEDSGCGMTSNIDQDMERLTLARCVPPHKRHRTQDQALRAPLGHCAAVSWEAVSANG 579
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G02080.1 ID=NO25G02080.1|Name=NO25G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp
CGGCGACGCCATACTTACGCGGTCACACGCTTTGCTTGCCCTCGGCATTA
TTTTACAAAATTTCAAGCAAGAGGGATGTGGGCAAAAATTTCCTACCTGT
CCTTGACACCCCCACCTTCGACCTTTCGAATGTTTTGAGGACCTCAATTG
CATAACGGAGAGAAAGATGTGTCACTTGTACTTGTGGCCTTACCTTTTTT
ACCAGCAGCCATAGGAGCTTGTACGAATATATTGACCACGCTTTCCACAA
AGAATGCAAAAAACCGTCGCGTCGTTTTCTTGTCATGTCTTGCATACTTC
CATGGGCAGTAGCGCCCCCACCCCTTCATCCCATTGCCCTCTTGTCCTGC
CCCTCTTATTACTCATCGTATATTATAAGCAGATTCTTAACCTTGCTCCC
CACTCACAAAACACCTATGTCAAACAAGACACCAGCGCCACGACGATGAC
TCCGAGCGCTGCCGCCACCTCGTCCTCGCCCGGTACGGGGAGGTGGGGCC
TGCAAGATGCCTTTCACGACATACAGAACGCGATTTCGGAAGGATTGGCC
TGCACTCATTGTCAAGCCTGCCACTACAACTTGGCAGCCTGCTCGTGCTG
CTTATCAACATTTTACTGCGGCAAAGATTGTCAACAAGCACACTGGTTGG
TCGCACACCAGCGAGAATGCTCCGCAATGGCACACCACGGCTTCCAAAAC
TTCATGCGGGCCATGGAGGAGCAGCAAGAGCAGCAGCGGGAGCACCACCA
GATGAAGGCCTGTCCACCCTCGGCTGCCGGCAATACTACGAGAGGGTGGC
AACAACCATGCAGTTCGAGGGTTAATACCAAGGCTGTAGATGCTTGGCTG
CAGGAAATGGGTAGTGCGGCCTTTGCAATTGCCTCCCAGTCCCCCCCCTG
GTCCTTCCGCCAATTCTCTACCTGCTTGCCCGCAGAAGCCGCCGCCACTG
AAAGTTATCCACCTTTGCCAGAGCCCGGCTTGCAAGGCTTAAAAACCCTT
TGCATTCTAGCCAAGGGTAGCATTCTATTTTTGCAGGGGCAGGAGCAACA
ACGGCAACTGTCCCTTGCCTCCTCTCCCTCCGCCTCCCCTCAGTCCTCCT
TCTCCTCCTCTTCCACCTCGACAGACTCAGTCGCTACCCGCATATACCTA
AAAACGCTAGCCGTCCACGGACAGCTCTCTCTCCGACCAGGTAACGTCCG
GTCCAAGCAGGAGACAGCCGTTAAGAAGATCATCGATGCCCTACGCAAGC
ATCAGGAAGCAGCCCGCCTCGTCCCCGACTGGACTGTTCGCCTCCTCCTC
GTGGCGGGCCGGTTACTCTGCTCCCTAGGTCGACGCTCAGATGCCGTGGT
GCTGCTTCAAATGCACCTCCCTCTTCTGGAGGCCTTGTCCATGGCTGCGC
CTCTAGCTGTGGCCTACCTGTGGCTGCAATACACGCAGTGGGCATACTAC
GATCTGGGTGCCTGGATGGACAAGCCCCTCGAGGAGCAGCGGGAGGCAGC
CGCCAAAGTCGAAGCGGCCTGTCGCAAGGCTTTGATGCTCTTACACGGAG
CCGATGTCATGACTAGATCCCTCTCCTCCTCGTCGTCCTCCTCGTCGTCC
TCCTCGTCCTGCTCCTCGTCCGCTTTGCACTCTTCTCCCCGCAGATCTCT
TTACGCAGAGGCCTTGTTAGCAACGGCAAGTTTCCGGCTCGCCGATCTAC
TCCTTGAGCGAGGAGCAGTATCAGACGCCCTCGAACTATGTCGCATCTCC
CTTCATAACGCCGCGCCCGTCCACTTTCCCACCCTGGCAGTGTACCTGGC
AGCCGCATTGCAAGCACTGGGGAAGGGCGGAAAGACAGAAGCAGCAATCG
AGATTAGAATGGAGAAGAAACTCCGGCAGGTTATGGCTGAGAAAATGAAG
CGGCGTGACCCGTCCTGCTCCACTCCTTTGCTTCCTTTCCCTCGCTCGGC
ATCGCTCTTGAACATGCATGGGTTGGAGGACATGTGGAATTTGCCTACCG
AGCCGCAGCTGCTCATTGACAATCACGATCATCACCACCACCTACCTCAA
GTGCACCGTCGCTTTGAACAGCACCATCGGCAGCAGCAGCAACAGCGGCA
CGAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAA
TCAGATTGAATATTCCGAGAACAGAAAAACATAAAGAAACGCAAGCCAAA
ACGGAGGCTGTTGCCATGGCCGTGTGTGGTGAGAAAGAATTGGAGAGGGA
AGGAAGGAAAGAAACCCACGTGGCCATTCCTCCTTCTATCTGTACAGCCC
GTCCCAGGCCTGCGTCAGCGTCTCCGTCTCCTGAGTCTGATGGTTCAAAC
GAAAATAATTTTTCAGCGGACGTCCCTCCCCAGAAGCGTCGCCGCAGCCA
GCGCCCTCACATTCTCGACCAACTTGCCTGCTGTGTGGCGCTGCCCTGGT
GGGCGGTTACTGCCCATGGCTAATAGTGACGACCGACCCCAAGATTTACA
CATAAGAAAACCAGATACTAAAGGGCCTCTTGGGCTGGAAAAGGTGTATT
ATACAGCAGAAATGTACAAAAGAGAACCACAACCTGAGCCTGAATCTAAG
AATAATGAGAGGAAGGAATGCGTGTGCATGCACTGTGCCCAGTGAAGAAA
GTATATAGTCCCCACTACCTACAAAGCAAGAGAAAACAAGCAATTTCAAC
GGAGAAAAG back to topprotein sequence of NO25G02080.1 >NO25G02080.1-protein ID=NO25G02080.1-protein|Name=NO25G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MQKTVASFSCHVLHTSMGSSAPTPSSHCPLVLPLLLLIVYYKQILNLAPH
SQNTYVKQDTSATTMTPSAAATSSSPGTGRWGLQDAFHDIQNAISEGLAC
THCQACHYNLAACSCCLSTFYCGKDCQQAHWLVAHQRECSAMAHHGFQNF
MRAMEEQQEQQREHHQMKACPPSAAGNTTRGWQQPCSSRVNTKAVDAWLQ
EMGSAAFAIASQSPPWSFRQFSTCLPAEAAATESYPPLPEPGLQGLKTLC
ILAKGSILFLQGQEQQRQLSLASSPSASPQSSFSSSSTSTDSVATRIYLK
TLAVHGQLSLRPGNVRSKQETAVKKIIDALRKHQEAARLVPDWTVRLLLV
AGRLLCSLGRRSDAVVLLQMHLPLLEALSMAAPLAVAYLWLQYTQWAYYD
LGAWMDKPLEEQREAAAKVEAACRKALMLLHGADVMTRSLSSSSSSSSSS
SSCSSSALHSSPRRSLYAEALLATASFRLADLLLERGAVSDALELCRISL
HNAAPVHFPTLAVYLAAALQALGKGGKTEAAIEIRMEKKLRQVMAEKMKR
RDPSCSTPLLPFPRSASLLNMHGLEDMWNLPTEPQLLIDNHDHHHHLPQV
HRRFEQHHRQQQQQRHEQQRQQQQQQQQQQQRIRLNIPRTEKHKETQAKT
EAVAMAVCGEKELEREGRKETHVAIPPSICTARPRPASASPSPESDGSNE
NNFSADVPPQKRRRSQRPHILDQLACCVALPWWAVTAHG* back to topmRNA from alignment at chr25:654535..657358+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G02080.1 ID=NO25G02080.1|Name=NO25G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2824bp|location=Sequence derived from alignment at chr25:654535..657358+ (Nannochloropsis oceanica)
CGGCGACGCCATACTTACGCGGTCACACGCTTTGCTTGCCCTCGGCATTA
TTTTACAAAATTTCAAGCAAGAGGGATGTGGGCAAAAATTTCCTACCTGT
CCTTGACACCCCCACCTTCGACCTTTCGAATGTTTTGAGGACCTCAATTG
CATAACGGAGAGAAAGATGTGTCACTTGTACTTGTGGCCTTACCTTTTTT
ACCAGCAGCCATAGGAGCTTGTACGAATATATTGACCACGCTTTCCACAA
AGAATGCAAAAAACCGTCGCGTCGTTTTCTTGTCATGTCTTGCATACTTC
CATGGGCAGTAGCGCCCCCACCCCTTCATCCCATTGCCCTCTTGTCCTGC
CCCTCTTATTACTCATCGTATATTATAAGCAGATTCTTAACCTTGCTCCC
CACTCACAAAACACCTATGTCAAACAAGACACCAGCGCCACGACGATGAC
TCCGAGCGCTGCCGCCACCTCGTCCTCGCCCGGTACGGGGAGGTGGGGCC
TGCAAGATGCCTTTCACGACATACAGAACGCGATTTCGGAAGGATTGGCC
TGCACTCATTGTCAAGCCTGCCACTACAACTTGGCAGCCTGCTCGTGCTG
CTTATCAACATTTTACTGCGGTGCGTAAGAAGAAAATGTGATGCCGGAAA
ATCGATAGAAAGTCCTTCGTCCTTTCCCCCCTGACTCCCGAATGGTTAAC
CCTCATTTTCCTCATCGCTCTCATCTTAACAATAGGCAAAGATTGTCAAC
AAGCACACTGGTTGGTCGCACACCAGCGAGAATGCTCCGCAATGGCACAC
CACGGCTTCCAAAACTTCATGCGGGCCATGGAGGAGCAGCAAGAGCAGCA
GCGGGAGCACCACCAGATGAAGGCCTGTCCACCCTCGGCTGCCGGCAATA
CTACGAGAGGGTGGCAACAACCATGCAGTTCGAGGGTTAATACCAAGGCT
GTAGATGCTTGGCTGCAGGAAATGGGTAGTGCGGCCTTTGCAATTGCCTC
CCAGTCCCCCCCCTGGTCCTTCCGCCAATTCTCTACCTGCTTGCCCGCAG
AAGCCGCCGCCACTGAAAGTTATCCACCTTTGCCAGAGCCCGGCTTGCAA
GGCTTAAAAACCCTTTGCATTCTAGCCAAGGGTAGCATTCTATTTTTGCA
GGGGCAGGAGCAACAACGGCAACTGTCCCTTGCCTCCTCTCCCTCCGCCT
CCCCTCAGTCCTCCTTCTCCTCCTCTTCCACCTCGACAGACTCAGTCGCT
ACCCGCATATACCTAAAAACGCTAGCCGTCCACGGACAGCTCTCTCTCCG
ACCAGGTAACGTCCGGTCCAAGCAGGAGACAGCCGTTAAGAAGATCATCG
ATGCCCTACGCAAGCATCAGGAAGCAGCCCGCCTCGTCCCCGACTGGACT
GTTCGCCTCCTCCTCGTGGCGGGCCGGTTACTCTGCTCCCTAGGTCGACG
CTCAGATGCCGTGGTGCTGCTTCAAATGCACCTCCCTCTTCTGGAGGCCT
TGTCCATGGCTGCGCCTCTAGCTGTGGCCTACCTGTGGCTGCAATACACG
CAGTGGGCATACTACGATCTGGGTGCCTGGATGGACAAGCCCCTCGAGGA
GCAGCGGGAGGCAGCCGCCAAAGTCGAAGCGGCCTGTCGCAAGGCTTTGA
TGCTCTTACACGGAGCCGATGTCATGACTAGATCCCTCTCCTCCTCGTCG
TCCTCCTCGTCGTCCTCCTCGTCCTGCTCCTCGTCCGCTTTGCACTCTTC
TCCCCGCAGATCTCTTTACGCAGAGGCCTTGTTAGCAACGGCAAGTTTCC
GGCTCGCCGATCTACTCCTTGAGCGAGGAGCAGTATCAGACGCCCTCGAA
CTATGTCGCATCTCCCTTCATAACGCCGCGCCCGTCCACTTTCCCACCCT
GGCAGTGTACCTGGCAGCCGCATTGCAAGCACTGGGGAAGGGCGGAAAGA
CAGAAGCAGCAATCGAGATTAGAATGGAGAAGAAACTCCGGCAGGTTATG
GCTGAGAAAATGAAGCGGCGTGACCCGTCCTGCTCCACTCCTTTGCTTCC
TTTCCCTCGCTCGGCATCGCTCTTGAACATGCATGGGTTGGAGGACATGT
GGAATTTGCCTACCGAGCCGCAGCTGCTCATTGACAATCACGATCATCAC
CACCACCTACCTCAAGTGCACCGTCGCTTTGAACAGCACCATCGGCAGCA
GCAGCAACAGCGGCACGAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGAATCAGATTGAATATTCCGAGAACAGAAAAACATAAA
GAAACGCAAGCCAAAACGGAGGCTGTTGCCATGGCCGTGTGTGGTGAGAA
AGAATTGGAGAGGGAAGGAAGGAAAGAAACCCACGTGGCCATTCCTCCTT
CTATCTGTACAGCCCGTCCCAGGCCTGCGTCAGCGTCTCCGTCTCCTGAG
TCTGATGGTTCAAACGAAAATAATTTTTCAGCGGACGTCCCTCCCCAGAA
GCGTCGCCGCAGCCAGCGCCCTCACATTCTCGACCAACTTGCCTGCTGTG
TGGCGCTGCCCTGGTGGGCGGTTACTGCCCATGGCTAATAGTGACGACCG
ACCCCAAGATTTACACATAAGAAAACCAGATACTAAAGGGCCTCTTGGGC
TGGAAAAGGTGTATTATACAGCAGAAATGTACAAAAGAGAACCACAACCT
GAGCCTGAATCTAAGAATAATGAGAGGAAGGAATGCGTGTGCATGCACTG
TGCCCAGTGAAGAAAGTATATAGTCCCCACTACCTACAAAGCAAGAGAAA
ACAAGCAATTTCAACGGAGAAAAG back to topCoding sequence (CDS) from alignment at chr25:654535..657358+ >NO25G02080.1 ID=NO25G02080.1|Name=NO25G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at chr25:654535..657358+ (Nannochloropsis oceanica)
ATGCAAAAAACCGTCGCGTCGTTTTCTTGTCATGTCTTGCATACTTCCAT
GGGCAGTAGCGCCCCCACCCCTTCATCCCATTGCCCTCTTGTCCTGCCCC
TCTTATTACTCATCGTATATTATAAGCAGATTCTTAACCTTGCTCCCCAC
TCACAAAACACCTATGTCAAACAAGACACCAGCGCCACGACGATGACTCC
GAGCGCTGCCGCCACCTCGTCCTCGCCCGGTACGGGGAGGTGGGGCCTGC
AAGATGCCTTTCACGACATACAGAACGCGATTTCGGAAGGATTGGCCTGC
ACTCATTGTCAAGCCTGCCACTACAACTTGGCAGCCTGCTCGTGCTGCTT
ATCAACATTTTACTGCGGCAAAGATTGTCAACAAGCACACTGGTTGGTCG
CACACCAGCGAGAATGCTCCGCAATGGCACACCACGGCTTCCAAAACTTC
ATGCGGGCCATGGAGGAGCAGCAAGAGCAGCAGCGGGAGCACCACCAGAT
GAAGGCCTGTCCACCCTCGGCTGCCGGCAATACTACGAGAGGGTGGCAAC
AACCATGCAGTTCGAGGGTTAATACCAAGGCTGTAGATGCTTGGCTGCAG
GAAATGGGTAGTGCGGCCTTTGCAATTGCCTCCCAGTCCCCCCCCTGGTC
CTTCCGCCAATTCTCTACCTGCTTGCCCGCAGAAGCCGCCGCCACTGAAA
GTTATCCACCTTTGCCAGAGCCCGGCTTGCAAGGCTTAAAAACCCTTTGC
ATTCTAGCCAAGGGTAGCATTCTATTTTTGCAGGGGCAGGAGCAACAACG
GCAACTGTCCCTTGCCTCCTCTCCCTCCGCCTCCCCTCAGTCCTCCTTCT
CCTCCTCTTCCACCTCGACAGACTCAGTCGCTACCCGCATATACCTAAAA
ACGCTAGCCGTCCACGGACAGCTCTCTCTCCGACCAGGTAACGTCCGGTC
CAAGCAGGAGACAGCCGTTAAGAAGATCATCGATGCCCTACGCAAGCATC
AGGAAGCAGCCCGCCTCGTCCCCGACTGGACTGTTCGCCTCCTCCTCGTG
GCGGGCCGGTTACTCTGCTCCCTAGGTCGACGCTCAGATGCCGTGGTGCT
GCTTCAAATGCACCTCCCTCTTCTGGAGGCCTTGTCCATGGCTGCGCCTC
TAGCTGTGGCCTACCTGTGGCTGCAATACACGCAGTGGGCATACTACGAT
CTGGGTGCCTGGATGGACAAGCCCCTCGAGGAGCAGCGGGAGGCAGCCGC
CAAAGTCGAAGCGGCCTGTCGCAAGGCTTTGATGCTCTTACACGGAGCCG
ATGTCATGACTAGATCCCTCTCCTCCTCGTCGTCCTCCTCGTCGTCCTCC
TCGTCCTGCTCCTCGTCCGCTTTGCACTCTTCTCCCCGCAGATCTCTTTA
CGCAGAGGCCTTGTTAGCAACGGCAAGTTTCCGGCTCGCCGATCTACTCC
TTGAGCGAGGAGCAGTATCAGACGCCCTCGAACTATGTCGCATCTCCCTT
CATAACGCCGCGCCCGTCCACTTTCCCACCCTGGCAGTGTACCTGGCAGC
CGCATTGCAAGCACTGGGGAAGGGCGGAAAGACAGAAGCAGCAATCGAGA
TTAGAATGGAGAAGAAACTCCGGCAGGTTATGGCTGAGAAAATGAAGCGG
CGTGACCCGTCCTGCTCCACTCCTTTGCTTCCTTTCCCTCGCTCGGCATC
GCTCTTGAACATGCATGGGTTGGAGGACATGTGGAATTTGCCTACCGAGC
CGCAGCTGCTCATTGACAATCACGATCATCACCACCACCTACCTCAAGTG
CACCGTCGCTTTGAACAGCACCATCGGCAGCAGCAGCAACAGCGGCACGA
GCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAATCA
GATTGAATATTCCGAGAACAGAAAAACATAAAGAAACGCAAGCCAAAACG
GAGGCTGTTGCCATGGCCGTGTGTGGTGAGAAAGAATTGGAGAGGGAAGG
AAGGAAAGAAACCCACGTGGCCATTCCTCCTTCTATCTGTACAGCCCGTC
CCAGGCCTGCGTCAGCGTCTCCGTCTCCTGAGTCTGATGGTTCAAACGAA
AATAATTTTTCAGCGGACGTCCCTCCCCAGAAGCGTCGCCGCAGCCAGCG
CCCTCACATTCTCGACCAACTTGCCTGCTGTGTGGCGCTGCCCTGGTGGG
CGGTTACTGCCCATGGCTAA back to top
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