NO25G02030, NO25G02030 (gene) Nannochloropsis oceanica

Overview
NameNO25G02030
Unique NameNO25G02030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr25:637722..638890 -

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Properties
Property NameValue
DescriptionChalcone isomerase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:637722..638890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016872intramolecular lyase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036298Chalcone_isomerase_sf
IPR016087Chalcone_isomerase
Homology
BLAST of NO25G02030 vs. NCBI_GenBank
Match: XP_005854048.1 (chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >XP_005855216.1 chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >EKU21138.1 chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526] >EKU22307.1 chalcone isomerase-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.5 bits (750), Expect = 5.800e-76
Identity = 146/234 (62.39%), Postives = 188/234 (80.34%), Query Frame = 0
Query:    1 MARYSILLRGLILAAVLCVL-AHGKASLDICEVKENEVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPSMALASGIFGLYMGDKAISPEAKKGFAAVAPQHL 234
            MAR  I    L  A +LC+   +GK S D CEVK  EVVDKVTG+ FP+HR  P+ G+ ++ +L+G GPRRKNLFVVEVNVYAVGLY+E++ LG+LK F+GK +++L+KE  YYA L KE SG+NRAL L+FAR VPAGK+VEAL+A++GV+++++ DFK+ LLAAIG+S  + ET+TLAWT DD+L+L VR+K VKTFPS+ LA GIF LY+G+K ISPEAKKGFAAVAPQH+
Sbjct:    1 MARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHI 234          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: EWM21716.1 (chalcone isomerase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 5.800e-76
Identity = 146/234 (62.39%), Postives = 188/234 (80.34%), Query Frame = 0
Query:    1 MARYSILLRGLILAAVLCVL-AHGKASLDICEVKENEVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPSMALASGIFGLYMGDKAISPEAKKGFAAVAPQHL 234
            MAR  I    L  A +LC+   +GK S D CEVK  EVVDKVTG+ FP+HR  P+ G+ ++ +L+G GPRRKNLFVVEVNVYAVGLY+E++ LG+LK F+GK +++L+KE  YYA L KE SG+NRAL L+FAR VPAGK+VEAL+A++GV+++++ DFK+ LLAAIG+S  + ET+TLAWT DD+L+L VR+K VKTFPS+ LA GIF LY+G+K ISPEAKKGFAAVAPQH+
Sbjct:  365 MARSCIFRLALFCAILLCLSDGYGKTSNDTCEVKGKEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETSLLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHI 598          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: CEM34595.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 137.1 bits (344), Expect = 7.000e-29
Identity = 82/189 (43.39%), Postives = 111/189 (58.73%), Query Frame = 0
Query:   39 DKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGK-LKGFKGKDADSLSKEKGYY-ALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPSMALASGIFGLYMGDKAISPEAKKGF 226
            DKVTGI FP   +FP   K    +L+GAGPRRKNL + +VNVY+VGLYVE     K L  FKG+  +SL  +  +Y  LL KE   + + + L FAR V A KV +ALSA++GVE +++++F   L   +G S  K ETI + WT D +L + +R +   T     L    F LY+G   +S EAK  F
Sbjct:   11 DKVTGIEFPCEATFPGTPK---MTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKE---VPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAF 193          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: CBJ33403.1 (Similar to Chalcone Isomerase [Ectocarpus siliculosus])

HSP 1 Score: 126.3 bits (316), Expect = 1.200e-25
Identity = 73/199 (36.68%), Postives = 110/199 (55.28%), Query Frame = 0
Query:   36 EVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGK-LKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPSMALASGIFGLYMGDKAISPEAKKGFAAVAPQHL 234
            +V D  TG+  P  R+  +A        +G G R K++  V VNVY VGLYVE     K LK + G+D + LSK+K  Y +L       ++ L LVFAR+V A KVV+A +A++GV + +L  F    +  +G S  + E++TL W   D+L + VR+K + +    +L + +F L++G   +SP AK  FA   P  L
Sbjct:   32 DVRDPATGLVLP--RTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVL-GGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFL 227          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: CBJ30273.1 (Chalcone Isomerase [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-15
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 0
Query:   13 LAAVLCVLAHGKASLDICEVKENEVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYV-ESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKI------LTDFKEKLLAAIGTSAGKGETITLAWTA-DDKLALSVRNKHVKTFPSMALASGIFGLYMGDKAISPEAKKGFA 227
            LAA   +L    A  ++C     +V ++ T ISF    S P    S   SLMG G R K +    V VYAVGLYV E A   +L+  KG+D +SL K  G++  +   KS   + + L  AR V   K+V AL+  E V+ +I      L  F++ LL A+G      + +   +      L +SV  K   T  S  L+S +  +Y+G KA+SP AKK FA
Sbjct:   11 LAAAGALLLLLAAPQNLC--ARADVTERATKISFREKVSLPGGSGS---SLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGESLGKNDGFFTRVA--KSNFEKTMVLKMAREVGTEKMVSALA--ESVKPRISGSKKPLDSFQDILLKAVGKEGAAKKGMQFGFVCKPGALCVSVNGKDAGTIKSGPLSSAMVDVYLGKKAVSPGAKKAFA 223          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: AOC83894.1 (chalcone isomerase 3a, partial [Conocephalum conicum])

HSP 1 Score: 84.7 bits (208), Expect = 4.100e-13
Identity = 72/224 (32.14%), Postives = 105/224 (46.88%), Query Frame = 0
Query:   23 GKASLDICEVKENEVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFK--------EKLLAAIGTSAGKGETIT------LAWTADDKLALSVRNKHVKTFP------SMALASGIFGLYMGDKAISPEAKKGFA 227
            G+AS+ +    ENEV++ VTGI F      P  G SK+  L+GAG R K +  ++V VYAVGLYVE +    L+ +K K A  L K++ ++  +    S + ++L +V AR +   +   AL      +E +    K        EK L A G    K   +T      L WT    L +SV        P      S AL S ++ +Y+G   +SP AK   A
Sbjct:   80 GRASVGV----ENEVLEPVTGIKFLKTTIAP--GASKELVLVGAGVRDKKIAFLKVKVYAVGLYVEPSVASSLEAWKAKAASELEKDESFFKAII--DSPVEKSLRIVLARDIEGAQFWGAL------DEALAPRLKAAGAGVAGEKALVAFG-DVFKNRPLTDRTVIFLTWTQPSTLHISVSTDGASPSPPDASIESGALLSCLYDVYLGKDPVSPAAKAAIA 288          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: AOC83895.1 (chalcone isomerase 3a, partial [Conocephalum japonicum])

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-12
Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 0
Query:   23 GKASLDICEVKENEVVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFK--------EKLLAAIG----TSAGKGET-ITLAWTADDKLALSVRNKHVKTFP------SMALASGIFGLYMGDKAISPEAKKGFA 227
            G+AS+ +    ENEV++ VTGI F      P  G SK+  L+GAG R K +  ++V VYAVGLYVE +    L+ +K K A  L K++ +   +    S + ++L +V AR +   +   AL      +E +    K        EK L A G        K  T I L WT    L +SV        P      S AL S ++ +Y+G   +SP AK   A
Sbjct:   73 GRASVGV----ENEVLEPVTGIKFLKTTIAP--GASKELVLVGAGVRDKKIAFLKVKVYAVGLYVEPSVASSLEAWKAKGASELEKDESFSKAII--DSPVEKSLRIVLARDIEGAQFWGAL------DEALAPRLKAAGAGVAGEKALVAFGDVFKNRPLKDRTVIFLTWTQPSTLHISVSTDGASPSPPDASIESGALLSCLYDVYLGKDPVSPAAKAAIA 281          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: XP_022140846.1 (fatty-acid-binding protein 3, chloroplastic [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 8.500e-11
Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = 0
Query:   24 KASLDICEVKENE-VVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAI-----GTSAGKGETITLAWTADDKLALSVRNKHV-----KTFPSMALASGIFGLYMGDKAISPEAKKGFA 227
            KAS  I  V   E VV+  T + F    S P  G S   SL+G G R K   ++ V VYA GLY+ ++   +L  ++G+ A  + ++   + ++ K  S   ++L++V  R V      +AL        K  T   E  L+       G S  KG  I L W    K+ +S+    +      T  S  + S +F ++ GD  +SP  K   A
Sbjct:   62 KASSSIASVGNTEYVVEPSTNVKFSTSLSLP--GCSTSLSLLGTGYREKVFAIIGVKVYAAGLYINTSVSNELNSWRGRSATVIQEDSSLFNIIFKSPS--EKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDELALSTFRSIFQGRSLKKGTFIFLTWLEPPKMLVSISVDGLPTGVEATIESNNVTSALFDVFFGDSPVSPTLKASVA 271          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: XP_014502457.1 (fatty-acid-binding protein 3, chloroplastic isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 74.7 bits (182), Expect = 4.200e-10
Identity = 60/211 (28.44%), Postives = 91/211 (43.13%), Query Frame = 0
Query:   37 VVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALS--------ALEGVEEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHV-----KTFPSMALASGIFGLYMGDKAISPEAKKGFAAVAPQHLK 235
            V +  T + F    +FP  G S   +L G G R K   ++ V VYA GLY++ +   +L  +KG   D++      +   T  +S   ++L+++  R V      +ALS        A    +E  LT F+   L     S  KG  I L W    KL +SV           T  S  +AS +F +++GD  +SP  K   A    + LK
Sbjct:   78 VEEPATNVKFQTCLNFP--GCSNSLTLFGTGYREKVFAIIGVKVYAAGLYLDQSITPELNAWKGLSKDAIQGNSSLFQ--TIFQSSFEKSLQIILVRDVDGQTFWDALSDAIAPRIPASTSADETALTTFRGVFL---DRSLKKGTFILLTWLNPTKLLVSVSPNRFPSTVDATIESANVASALFNVFLGDSPVSPSLKSSVAEGLSKVLK 281          
BLAST of NO25G02030 vs. NCBI_GenBank
Match: XP_004146009.1 (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus] >KGN55017.1 hypothetical protein Csa_4G622760 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-9
Identity = 54/200 (27.00%), Postives = 89/200 (44.50%), Query Frame = 0
Query:   37 VVDKVTGISFPIHRSFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKGKDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGVEEKILTDFKEKLLAAI-----GTSAGKGETITLAWTADDKLALSVR-----NKHVKTFPSMALASGIFGLYMGDKAISPEAKKGFA 227
            V +  T + FP   + P  G S   SL+G G R K   ++ V VYA GLY+ S+   +L  ++G+ A ++ ++   + ++ + +S   ++L++V  R V      +AL        K  T   E  L+       G S  KG  I L W    K+ +S+           T  S  + S +F ++ GD  +SP  K   A
Sbjct:   75 VEEPSTNVKFPTSLTLP--GCSTSLSLLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSRS--EKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIFLTWLEPPKMLVSISIDGSPTGIDATIESNNVTSSLFDVFFGDSPVSPTLKASVA 270          
The following BLAST results are available for this feature:
BLAST of NO25G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854048.15.800e-7662.39chalcone isomerase-like protein [Nannochloropsis g... [more]
EWM21716.15.800e-7662.39chalcone isomerase-like protein [Nannochloropsis g... [more]
CEM34595.17.000e-2943.39unnamed protein product [Vitrella brassicaformis C... [more]
CBJ33403.11.200e-2536.68Similar to Chalcone Isomerase [Ectocarpus siliculo... [more]
CBJ30273.11.500e-1535.14Chalcone Isomerase [Ectocarpus siliculosus][more]
AOC83894.14.100e-1332.14chalcone isomerase 3a, partial [Conocephalum conic... [more]
AOC83895.11.600e-1232.74chalcone isomerase 3a, partial [Conocephalum japon... [more]
XP_022140846.18.500e-1128.50fatty-acid-binding protein 3, chloroplastic [Momor... [more]
XP_014502457.14.200e-1028.44fatty-acid-binding protein 3, chloroplastic isofor... [more]
XP_004146009.11.200e-927.00PREDICTED: fatty-acid-binding protein 3 isoform X1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006419NSK006419Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G02030.1NO25G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604160gene_8826Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CHIgene8716Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G02030.1NO25G02030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G02030 ID=NO25G02030|Name=NO25G02030|organism=Nannochloropsis oceanica|type=gene|length=1169bp
ATGGCCCGCTATTCGATCCTCCTTCGTGGCCTGATCCTCGCGGCCGTCCT
CTGCGTCTTGGgtgagtgcctgcccctccaggccgctggtgttggttacc
ctcttatcactttgtctccttggtttcactccctctagtatacggggggg
gatagaacaatcgtcaggatttgttggggactggttcaggttctatcgtt
ccatttcccgtcccgtccctccctccctcgccccctcaccctctccctca
cctctctccttcccattctagCTCACGGCAAGGCTTCATTAGACATTTGC
GAGGTGAAGGAAAATGAGGTAGTGGACAAAGTAACGGGTATTTCCTTCCC
CATCCATCGCTCCTTTCCCTATGCCGGCAAAAGCAAGGATTTTTCCCTCA
TGGGGGCGGGGCCACGAAGGAAGAATTTGTTTGTGGTGGAAGTTAATGTT
TACGCGGTCGGCCTGTATGTGGAGAGTGCCCACCTAGGGAAGCTCAAAGG
CTTTAAAGGGAAGGATGCGGACAGCTTGAGTAAGGAGAAGGGTTACTATG
CCCTGCTAACAAAGGAGAAAAGCGGGATGAATCGAGCCTTGGAGCTGGTG
TTTGCGCGAGCAGTACCCGCGGGGAAGGTGGTTGAAGCGCTGTCTGCACT
GGAAGGAGTGGAGGAGAAGATTCTGACGGACTTCAAGGAAAAGCTGTTGG
CGGCTATAGGGACATCGGCCGGAAAAGGGGAGACCATCACCCTGGCGTGG
ACGgtcagtgcgagggagagggagggaaggggaaagaccagtgaagaccg
ttgggacgacttcggaagagaggagcttctccctgtcaatctatgtttcc
tcctttaccttcctatccccctctcagctgtctagcaggcattccccagc
ctggaacggcacggagtactttcaggtcgcacatggacgataaggttctc
attctcaatccccttcctttatcctccctccctcccttccttccttcctc
cccctagGCCGATGATAAGCTGGCCCTCTCTGTCCGCAACAAGCATGTTA
AGACGTTCCCTAGCATGGCGCTGGCCAGTGGTATCTTCGGCCTTTACATG
GGTGACAAGGCCATCTCACCCGAGGCCAAGAAGGGGTTCGCGGCTGTCGC
GCCCCAGCACTTGAAGTAG
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protein sequence of NO25G02030.1

>NO25G02030.1-protein ID=NO25G02030.1-protein|Name=NO25G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MARYSILLRGLILAAVLCVLAHGKASLDICEVKENEVVDKVTGISFPIHR
SFPYAGKSKDFSLMGAGPRRKNLFVVEVNVYAVGLYVESAHLGKLKGFKG
KDADSLSKEKGYYALLTKEKSGMNRALELVFARAVPAGKVVEALSALEGV
EEKILTDFKEKLLAAIGTSAGKGETITLAWTADDKLALSVRNKHVKTFPS
MALASGIFGLYMGDKAISPEAKKGFAAVAPQHLK*
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Synonyms
Publications