NO25G01960, NO25G01960 (gene) Nannochloropsis oceanica

Overview
NameNO25G01960
Unique NameNO25G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1975
Alignment locationchr25:599688..601662 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:599688..601662 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006408NSK006408Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01960.2NO25G01960.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO25G01960.1NO25G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673706gene_8814Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01960.2NO25G01960.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO25G01960.1NO25G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01960 ID=NO25G01960|Name=NO25G01960|organism=Nannochloropsis oceanica|type=gene|length=1975bp
AGCACAGGAACGGCTGACACATCACAAACACAAGCAGCAGCAATGTCCAG
TGGTGGTCCCGGTCAGGATACTAGCAGCGGTGACAAGAAATTGATGGAAG
TGGGCGTCAAAGgtgaggaccgagaaccttgacgacacgcgtctgcctcg
ctgggggttacagaccttcttcttgatgtaaggccatatcgttagaccaa
cacagcatgctgtgcaaagtgtcacatcccttgtttggaacgggccccag
tgcgggcacacgtgaggcattttatcgattgagtggtctcctatccctcc
ctctctcccgccctcccctctgttatgcgccatatctccttcctcaagtc
tctcgtcgtctctcttcccgtacacacgaacgatgtggcagCTGGGGAGG
CTCAGAGTTGCAAGGCCTCCCAGAATGAGCTAGTGGGAGCTGCAGCAGCG
GGTGCTACCGTCGgtaagcaagcttcagtcagatggcagggaggggaacg
ccccccgtacttttactgctcctctcgacatcccatatgtcgcccttacc
cttaatgtattcacttgtcttgtcctatcgtttcttggtagGCATGATGA
TTGCAGGTCCCGTCGTGGCGGTCGCGGGCGGGATAGTGGCTGGCATGATG
GCTGCCAACAACGAAGGCCAGGGGGGCGAGgtagggaaggagggagggaa
ggaggaaaggagcaagaaagggactttagcttgtcttcaaggactgactg
tttcaataatccgcttggtcattagGTGGCTCGGGCGACTGGTCGGGCGG
CGAGCACCGCATTTGAAAGTGCCAAAGCTTTCGACAAGGAGCATCATgta
aggaatgagaggctgggagggaagagaagaggaacgatgagagagctggg
agtcataagacactgtcttagcatgctgttgtgttgcctggtctgtcaat
ctagatggccgaagggctgaagagagaaacggaagcgagagtgtgcgggg
ccggcagaggaggaggccacgggggaggtgaccggcattaagcagctgta
gtccctccgatgaggcatgtggacagtcactcccactcctcttcctgatt
gcaccctctcactttcattttatccaaacacaaatagATGACTGAGAAGC
TGAAGGATGCGGCGGCCAAGACGATGGCTAAGGCCCAGGCGCTGGACAAG
GAGTTTCATgtatgctgggagggagggagggagggagggaggaagggaat
gagggagtgtaggagagggagggagggagggagggagttgtaggagaggg
agggagggaatgagggagttgtaggagagggaggaagggaatgagggagt
tgtaggagagaaaaaagagagataaagaagatttttgccttactcgccct
ctctcccactcctcctccctccctccctccctcccctcctctccatcccc
caaacccagATCGTGGACAAGGTGAAAGAAAGCACGGGCAAGGCGATGAG
CCAGGCCAAGAGGATGGACGAGGAACATCACATCACTCAAAAACTGTCGG
CAGgtagggggggagggagagagggagggatgaaaggaaaaagaacatgt
tggttatactcgtacatgcgcatatccatctgtcagctcgctttccctga
tatcaaattcctccctccctccctccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccccctagGCCTGGTAAAGG
GTCTTGACAACGTGACGAAAGCCATGACCGGTGGAAAGGAGAAGCGAGGC
GGCACCGACGGTGAAGGGAAGCATGCGTAGAGGGAGGGGGCGAGGGAGGG
TTCGGAGTATGATGTAGAACGCGAGGATGATTTAGAAGAAATGAAGAGGG
AGGGAGGGAGGGAGGGGAAAGAGTGAGCCAAGGGAATTGGCGAACACAAA
GAATAAGAATGAGAGATTAAGCAGA
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protein sequence of NO25G01960.2

>NO25G01960.2-protein ID=NO25G01960.2-protein|Name=NO25G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MRHISFLKSLVVSLPVHTNDVAAGEAQSCKASQNELVGAAAAGATVGMMI
AGPVVAVAGGIVAGMMAANNEGQGGEVARATGRAASTAFESAKAFDKEHH
MTEKLKDAAAKTMAKAQALDKEFHIVDKVKESTGKAMSQAKRMDEEHHIT
QKLSAGLVKGLDNVTKAMTGGKEKRGGTDGEGKHA*
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protein sequence of NO25G01960.1

>NO25G01960.1-protein ID=NO25G01960.1-protein|Name=NO25G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSSGGPGQDTSSGDKKLMEVGVKAGEAQSCKASQNELVGAAAAGATVGMM
IAGPVVAVAGGIVAGMMAANNEGQGGEVARATGRAASTAFESAKAFDKEH
HMTEKLKDAAAKTMAKAQALDKEFHIVDKVKESTGKAMSQAKRMDEEHHI
TQKLSAGLVKGLDNVTKAMTGGKEKRGGTDGEGKHA*
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Synonyms
Publications