NO25G01960.1, NO25G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01960.1
Unique NameNO25G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length748
Alignment locationchr25:599688..601662 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:599688..601662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01960.1 vs.
Match: XP_009839700.1 (hypothetical protein H257_13754 [Aphanomyces astaci]; ETV70636.1 hypothetical protein H257_13754 [Aphanomyces astaci])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = 0 
Query:   37 LVGAAAAGATVGMMIAGPVVAVAGGIVAGMMAANNEGQGGEVARATGRAASTAFESAKAFDKEHHMTEKLKDAAAKTMAKAQALDKEFHIVDKVKESTGKAMSQAKRMDEEHHITQKLSAGLVKGLDNVTKAM 170
            ++G+AAA A VG++IAGPV +V G     +MAA   G  GE+ARATG+  + +++ AKA ++ +HMT+K+K    K  A A+ LD  +HI  K        + +    +++HH+T +++   + GL  +TKA+
Sbjct:  113 MMGSAAAAAGVGLVIAGPVGSVLGAAGGAVMAAQG-GTSGELARATGQLVAASYDKAKAANERYHMTDKVKAGVVKATATAKHLDDTYHIQAKATSLARGGLGRLSSFNDKHHVTDRVAKSTLSGLQGLTKAL 244
The following BLAST results are available for this feature:
BLAST of NO25G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009839700.11.600e-1236.84hypothetical protein H257_13754 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01960NO25G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01960.1NO25G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01960.1.cds1NO25G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds2NO25G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds3NO25G01960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds4NO25G01960.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds5NO25G01960.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds6NO25G01960.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01960.1.cds7NO25G01960.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01960.1 ID=NO25G01960.1|Name=NO25G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=748bp
AGCACAGGAACGGCTGACACATCACAAACACAAGCAGCAGCAATGTCCAG
TGGTGGTCCCGGTCAGGATACTAGCAGCGGTGACAAGAAATTGATGGAAG
TGGGCGTCAAAGCTGGGGAGGCTCAGAGTTGCAAGGCCTCCCAGAATGAG
CTAGTGGGAGCTGCAGCAGCGGGTGCTACCGTCGGCATGATGATTGCAGG
TCCCGTCGTGGCGGTCGCGGGCGGGATAGTGGCTGGCATGATGGCTGCCA
ACAACGAAGGCCAGGGGGGCGAGGTGGCTCGGGCGACTGGTCGGGCGGCG
AGCACCGCATTTGAAAGTGCCAAAGCTTTCGACAAGGAGCATCATATGAC
TGAGAAGCTGAAGGATGCGGCGGCCAAGACGATGGCTAAGGCCCAGGCGC
TGGACAAGGAGTTTCATATCGTGGACAAGGTGAAAGAAAGCACGGGCAAG
GCGATGAGCCAGGCCAAGAGGATGGACGAGGAACATCACATCACTCAAAA
ACTGTCGGCAGGCCTGGTAAAGGGTCTTGACAACGTGACGAAAGCCATGA
CCGGTGGAAAGGAGAAGCGAGGCGGCACCGACGGTGAAGGGAAGCATGCG
TAGAGGGAGGGGGCGAGGGAGGGTTCGGAGTATGATGTAGAACGCGAGGA
TGATTTAGAAGAAATGAAGAGGGAGGGAGGGAGGGAGGGGAAAGAGTGAG
CCAAGGGAATTGGCGAACACAAAGAATAAGAATGAGAGATTAAGCAGA
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protein sequence of NO25G01960.1

>NO25G01960.1-protein ID=NO25G01960.1-protein|Name=NO25G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSSGGPGQDTSSGDKKLMEVGVKAGEAQSCKASQNELVGAAAAGATVGMM
IAGPVVAVAGGIVAGMMAANNEGQGGEVARATGRAASTAFESAKAFDKEH
HMTEKLKDAAAKTMAKAQALDKEFHIVDKVKESTGKAMSQAKRMDEEHHI
TQKLSAGLVKGLDNVTKAMTGGKEKRGGTDGEGKHA*
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mRNA from alignment at chr25:599688..601662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01960.1 ID=NO25G01960.1|Name=NO25G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at chr25:599688..601662- (Nannochloropsis oceanica)
AGCACAGGAACGGCTGACACATCACAAACACAAGCAGCAGCAATGTCCAG
TGGTGGTCCCGGTCAGGATACTAGCAGCGGTGACAAGAAATTGATGGAAG
TGGGCGTCAAAGGTGAGGACCGAGAACCTTGACGACACGCGTCTGCCTCG
CTGGGGGTTACAGACCTTCTTCTTGATGTAAGGCCATATCGTTAGACCAA
CACAGCATGCTGTGCAAAGTGTCACATCCCTTGTTTGGAACGGGCCCCAG
TGCGGGCACACGTGAGGCATTTTATCGATTGAGTGGTCTCCTATCCCTCC
CTCTCTCCCGCCCTCCCCTCTGTTATGCGCCATATCTCCTTCCTCAAGTC
TCTCGTCGTCTCTCTTCCCGTACACACGAACGATGTGGCAGCTGGGGAGG
CTCAGAGTTGCAAGGCCTCCCAGAATGAGCTAGTGGGAGCTGCAGCAGCG
GGTGCTACCGTCGGTAAGCAAGCTTCAGTCAGATGGCAGGGAGGGGAACG
CCCCCCGTACTTTTACTGCTCCTCTCGACATCCCATATGTCGCCCTTACC
CTTAATGTATTCACTTGTCTTGTCCTATCGTTTCTTGGTAGGCATGATGA
TTGCAGGTCCCGTCGTGGCGGTCGCGGGCGGGATAGTGGCTGGCATGATG
GCTGCCAACAACGAAGGCCAGGGGGGCGAGGTAGGGAAGGAGGGAGGGAA
GGAGGAAAGGAGCAAGAAAGGGACTTTAGCTTGTCTTCAAGGACTGACTG
TTTCAATAATCCGCTTGGTCATTAGGTGGCTCGGGCGACTGGTCGGGCGG
CGAGCACCGCATTTGAAAGTGCCAAAGCTTTCGACAAGGAGCATCATGTA
AGGAATGAGAGGCTGGGAGGGAAGAGAAGAGGAACGATGAGAGAGCTGGG
AGTCATAAGACACTGTCTTAGCATGCTGTTGTGTTGCCTGGTCTGTCAAT
CTAGATGGCCGAAGGGCTGAAGAGAGAAACGGAAGCGAGAGTGTGCGGGG
CCGGCAGAGGAGGAGGCCACGGGGGAGGTGACCGGCATTAAGCAGCTGTA
GTCCCTCCGATGAGGCATGTGGACAGTCACTCCCACTCCTCTTCCTGATT
GCACCCTCTCACTTTCATTTTATCCAAACACAAATAGATGACTGAGAAGC
TGAAGGATGCGGCGGCCAAGACGATGGCTAAGGCCCAGGCGCTGGACAAG
GAGTTTCATGTATGCTGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAT
GAGGGAGTGTAGGAGAGGGAGGGAGGGAGGGAGGGAGTTGTAGGAGAGGG
AGGGAGGGAATGAGGGAGTTGTAGGAGAGGGAGGAAGGGAATGAGGGAGT
TGTAGGAGAGAAAAAAGAGAGATAAAGAAGATTTTTGCCTTACTCGCCCT
CTCTCCCACTCCTCCTCCCTCCCTCCCTCCCTCCCCTCCTCTCCATCCCC
CAAACCCAGATCGTGGACAAGGTGAAAGAAAGCACGGGCAAGGCGATGAG
CCAGGCCAAGAGGATGGACGAGGAACATCACATCACTCAAAAACTGTCGG
CAGGTAGGGGGGGAGGGAGAGAGGGAGGGATGAAAGGAAAAAGAACATGT
TGGTTATACTCGTACATGCGCATATCCATCTGTCAGCTCGCTTTCCCTGA
TATCAAATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTAGGCCTGGTAAAGG
GTCTTGACAACGTGACGAAAGCCATGACCGGTGGAAAGGAGAAGCGAGGC
GGCACCGACGGTGAAGGGAAGCATGCGTAGAGGGAGGGGGCGAGGGAGGG
TTCGGAGTATGATGTAGAACGCGAGGATGATTTAGAAGAAATGAAGAGGG
AGGGAGGGAGGGAGGGGAAAGAGTGAGCCAAGGGAATTGGCGAACACAAA
GAATAAGAATGAGAGATTAAGCAGA
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Coding sequence (CDS) from alignment at chr25:599688..601662-

>NO25G01960.1 ID=NO25G01960.1|Name=NO25G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr25:599688..601662- (Nannochloropsis oceanica)
ATGTCCAGTGGTGGTCCCGGTCAGGATACTAGCAGCGGTGACAAGAAATT
GATGGAAGTGGGCGTCAAAGCTGGGGAGGCTCAGAGTTGCAAGGCCTCCC
AGAATGAGCTAGTGGGAGCTGCAGCAGCGGGTGCTACCGTCGGCATGATG
ATTGCAGGTCCCGTCGTGGCGGTCGCGGGCGGGATAGTGGCTGGCATGAT
GGCTGCCAACAACGAAGGCCAGGGGGGCGAGGTGGCTCGGGCGACTGGTC
GGGCGGCGAGCACCGCATTTGAAAGTGCCAAAGCTTTCGACAAGGAGCAT
CATATGACTGAGAAGCTGAAGGATGCGGCGGCCAAGACGATGGCTAAGGC
CCAGGCGCTGGACAAGGAGTTTCATATCGTGGACAAGGTGAAAGAAAGCA
CGGGCAAGGCGATGAGCCAGGCCAAGAGGATGGACGAGGAACATCACATC
ACTCAAAAACTGTCGGCAGGCCTGGTAAAGGGTCTTGACAACGTGACGAA
AGCCATGACCGGTGGAAAGGAGAAGCGAGGCGGCACCGACGGTGAAGGGA
AGCATGCGTAG
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Synonyms
Publications