NO25G01820, NO25G01820 (gene) Nannochloropsis oceanica

Overview
NameNO25G01820
Unique NameNO25G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1550
Alignment locationchr25:544300..545849 -

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Properties
Property NameValue
DescriptionCamphor resistance protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:544300..545849 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003691CrcB
Homology
BLAST of NO25G01820 vs. NCBI_GenBank
Match: EWM21691.1 (camphor resistance protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 1.300e-25
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 0
Query:    1 MLHHAKFAGLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINVAGSFVLGALSVSSHVDPRLKLMMGVGFCG 80
            ML H +  GL LDG AIGSGA CGALLRYGA+KVQE  KC PWAIP INVAGSFVL ALSVS+ VDPR +LM+GVGFCG
Sbjct:   52 MLFHLRHTGLWLDGMAIGSGAVCGALLRYGAVKVQERTKCAPWAIPCINVAGSFVLSALSVSTQVDPRFRLMLGVGFCG 130          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: OEU14726.1 (hypothetical protein FRACYDRAFT_269651 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-14
Identity = 55/139 (39.57%), Postives = 72/139 (51.80%), Query Frame = 0
Query:   13 DGAAIGSGAFCGALLRYGAMKVQEHY---------KCGPWAIPVINVAGSFVLGALSVSSHVD--------------------PRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAI 123
            D AA+G+GAF GAL RY A K+   +         K   W    +N++GSF+LGA+     +D                    PR KLM+GVGFCGS TTFSTFS D+V  ++ G+L  A  YV  NN+  V AA   +
Sbjct:    8 DIAALGAGAFFGALSRYQAGKIASDFIATNPKAYGKLTGWHTAGLNISGSFLLGAIYAMPTIDVDKINQIQSNKPWERFQGLSPRAKLMLGVGFCGSFTTFSTFSYDVVTWMNEGRLVRAFSYVATNNICSVAAAGFGM 146          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: XP_005758604.1 (hypothetical protein EMIHUDRAFT_219523 [Emiliania huxleyi CCMP1516] >EOD06175.1 hypothetical protein EMIHUDRAFT_219523 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 87.4 bits (215), Expect = 6.400e-14
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:    9 GLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINVAGSFVLGALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVL 109
            GL  + A +G+GA  GA+LR+G  ++ + +  GP AI  +NV GSF LG+L+  +    R  L++GVGFCG+ TTFSTFSVD + +L  G+   A  Y L
Sbjct:    2 GLPTEAALVGAGAVPGAILRFGVSEIAKQHNVGPAAILALNVVGSFALGSLA-GNGAARRANLLLGVGFCGAFTTFSTFSVDTLTMLQRGQNSRAAAYGL 100          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_078497755.1 (fluoride efflux transporter CrcB [Paenibacillus selenitireducens] >OPA80407.1 hypothetical protein BVG16_06670 [Paenibacillus selenitireducens])

HSP 1 Score: 83.6 bits (205), Expect = 9.300e-13
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 0
Query:   14 GAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINVAGSFVLG----ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            G A+G G F GALLRYG  +        PW I +IN  G   LG    A      + P + L +G GF G+ TTFSTF+VD VHL+  G +G A+ Y++ + + G+L A   ++L
Sbjct:    5 GIAVGLGGFAGALLRYGISEWIPAVNGFPWGILIINWTGCLFLGWFLTAAGRQFQIPPHVTLAIGTGFVGAYTTFSTFAVDTVHLMQDGHMGKALLYIVSSVIVGLLLAFAGVRL 119          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_090915556.1 (fluoride efflux transporter CrcB [Paenibacillus polysaccharolyticus] >SCX93019.1 CrcB protein [Paenibacillus polysaccharolyticus])

HSP 1 Score: 82.8 bits (203), Expect = 1.600e-12
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 0
Query:   15 AAIGSGAFCGALLRYGAMKVQEHYKCG-PWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            A IG+G F G L RY    +      G PWA+ +IN  GS  LG    +++   + P+L+L +G GF G+ TTFSTF++D V L   G+   A  Y+L + V G++  AL IKL
Sbjct:    5 AYIGAGGFLGTLTRYTIQLMLPSANTGFPWAVLLINAIGSLFLGFFFTIAIPEKITPQLRLAIGTGFTGAFTTFSTFTLDFVRLTEGGEWLKAAAYLLLSVVAGLVLCALGIKL 118          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: AGY59208.1 (camphor resistance protein CrcB [Gloeobacter kilaueensis JS1])

HSP 1 Score: 81.6 bits (200), Expect = 3.500e-12
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 0
Query:    5 AKFAGLLLDGAAIGSGAFCGALLRY--GAMKVQEHYKCGPWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            A+   ++L+   +  G   G+L RY  G   VQ      P    +INVAGSFVLG   AL V S V  R +L++G GFCG  TTFSTFSV+ ++LL  G +  A+ Y+L N +GG+ AA L   L
Sbjct:   24 ARREAVVLESILVMVGGGLGSLARYWVGTAVVQRFGTVFPAGTLLINVAGSFVLGVLFALGVLSLVGSRTRLLLGAGFCGGFTTFSTFSVESLNLLQKGSVLPAMVYLLGNVLGGLAAAWLGFGL 148          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_062325029.1 (CrcB family protein [Paenibacillus pabuli])

HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   17 IGSGAFCGALLRYGAMKVQEHYKCG-PWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            IG G   G L RYG          G PWA+ +IN  GS  LG    ++V   + P+L+L +G GF G+LTTFSTF++D+V L   G  G A  Y++ + + G+L  AL IK+
Sbjct:    7 IGIGGLLGTLCRYGVQLSMPAANDGFPWAVLLINAIGSLFLGWFFTIAVPGKITPQLRLAIGTGFTGALTTFSTFTLDMVRLSGGGMWGKAAIYLVVSLLAGLLLCALGIKV 118          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_064635857.1 (fluoride efflux transporter CrcB [Paenibacillus sp. AD87] >OAX46852.1 putative fluoride ion transporter CrcB [Paenibacillus sp. AD87])

HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   17 IGSGAFCGALLRYGAMKVQEHYKCG-PWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            IG G   G L RYG          G PWA+ +IN  GS  LG    ++V   + P+L+L +G GF G+ TTFSTF++D+V L   G  G A+ Y++ + + G+L  AL IK+
Sbjct:    7 IGIGGILGTLCRYGIQLWMPAANEGFPWAVMLINAIGSLFLGWFFTIAVPGKITPQLRLAIGTGFTGAFTTFSTFTLDMVRLSEGGMWGKAVIYLVVSLLAGLLLCALGIKV 118          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_041244810.1 (fluoride efflux transporter CrcB [Gloeobacter kilaueensis])

HSP 1 Score: 80.1 bits (196), Expect = 1.000e-11
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = 0
Query:   20 GAFCGALLRY--GAMKVQEHYKCGPWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            G   G+L RY  G   VQ      P    +INVAGSFVLG   AL V S V  R +L++G GFCG  TTFSTFSV+ ++LL  G +  A+ Y+L N +GG+ AA L   L
Sbjct:    3 GGGLGSLARYWVGTAVVQRFGTVFPAGTLLINVAGSFVLGVLFALGVLSLVGSRTRLLLGAGFCGGFTTFSTFSVESLNLLQKGSVLPAMVYLLGNVLGGLAAAWLGFGL 112          
BLAST of NO25G01820 vs. NCBI_GenBank
Match: WP_053779122.1 (fluoride efflux transporter CrcB [Paenibacillus sp. A59] >KOY18211.1 hypothetical protein AMS66_01395 [Paenibacillus sp. A59])

HSP 1 Score: 80.1 bits (196), Expect = 1.000e-11
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 0
Query:   17 IGSGAFCGALLRYGAMKVQEHYKCG-PWAIPVINVAGSFVLG---ALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKLGTAIGYVLFNNVGGVLAAALAIKL 125
            IG G   G L RYG          G PWA+ +IN  GS  LG    ++V   + P+L+L +G GF G+ TTFSTF++DIV L   G  G A+ Y++ +   G+L  AL IK+
Sbjct:    7 IGIGGIVGTLCRYGIQLWMPVTNEGFPWAVLLINAIGSLFLGWFFTIAVPGKITPQLRLAIGTGFTGAFTTFSTFTLDIVRLSEGGMWGEAVIYLVVSLFAGLLLCALGIKV 118          
The following BLAST results are available for this feature:
BLAST of NO25G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21691.11.300e-2575.95camphor resistance protein, partial [Nannochlorops... [more]
OEU14726.11.000e-1439.57hypothetical protein FRACYDRAFT_269651 [Fragilario... [more]
XP_005758604.16.400e-1445.00hypothetical protein EMIHUDRAFT_219523 [Emiliania ... [more]
WP_078497755.19.300e-1340.00fluoride efflux transporter CrcB [Paenibacillus se... [more]
WP_090915556.11.600e-1240.35fluoride efflux transporter CrcB [Paenibacillus po... [more]
AGY59208.13.500e-1243.20camphor resistance protein CrcB [Gloeobacter kilau... [more]
WP_062325029.17.900e-1241.07CrcB family protein [Paenibacillus pabuli][more]
WP_064635857.17.900e-1240.18fluoride efflux transporter CrcB [Paenibacillus sp... [more]
WP_041244810.11.000e-1147.27fluoride efflux transporter CrcB [Gloeobacter kila... [more]
WP_053779122.11.000e-1141.07fluoride efflux transporter CrcB [Paenibacillus sp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006384NSK006384Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01820.1NO25G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604036gene_8794Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101206g1gene8738Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01820.1NO25G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01820 ID=NO25G01820|Name=NO25G01820|organism=Nannochloropsis oceanica|type=gene|length=1550bp
GCGGCGTTAATGACCCTGTTATCTTTATGTGGGGAAGGGGTCGCGCATAA
GAAAGCGTGTTTGATCGGTGTCAAGGAAGAACAGGAACTCAGTCAGGTGT
CAATCAATGCTATCGACCTGCCAGCAGCTGCCGACCCTTTTCACGCCTTG
CCTCCCCCAAGCTACATGTGCACACAACGAGTTCTGTGTAATGTCCCTGT
CCTTGTCCTGGATTTCACCCAAAAAATGCCGGGAACACAAAGCACATGCG
AGCCTCGGGGTTGGATTTGAAGGCTCTGCAACAGTAACAGACCACTGCTC
GCTTGAACCACCACCCCGGAATAGCAATAGAGCGACAAAGCAGGACGCCT
GCACTGGTGAAAAGGCACCAGTTCCCGGTCTTTTTTTATTTTACAGAGAA
AGATTAAACAAAAACAACATTACTTTGTTAGGCTCCCCTAGCACCCTCCA
ACACACCCAACGCACCGACAACCGCACGCACCATCCCAACCGCATTAATG
CTCCACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGATTGG
GAGCGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGGTGC
AGGAGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTAGCG
GGGTCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCCCAG
GTTGAAACTGATGATGGGAGTTGGATTTTGTGgtacgtgcagagagggtg
ggaggaattgaaggagggggagcgtgtgtgtgtgggcatggaaaccgccg
ttgatcctaccaacccccatttccttccttccctcctttccctccccctc
tccacagGCTCCCTCACAACTTTCTCCACCTTCTCAGTCGATATCGTCCA
TCTGCTACATGCAGGCAAACTGGGCACGGCCATTGGATACGTCCTCTTCA
ACAATGTAGGGGGTGTCCTTGCGGCCGCCTTGGCAATCAAGCTCTTTACT
GGGAAAGGAGGATTTGGAGGAGGGGGGGGGCTAGGTGGTAAGGGTGGAGG
AGGGATCGGAGGGTTTCTCACCTCCCCGCTTTCTTTCGCTCCCTCGTCCT
TGCCGGCGGCGACGACGACGATGAGGGCGGGAATGATGAAGGGGGGGAGG
GAAGGAGTGAGGGAGGGGCGCGCAGCAACAACGGGAGCAGCAGCAGAAGT
GGTAGGGAGGGGAACGGGCCTACTGCCTGTGCCGGCGGTGGGTGAATGGG
GGCGAGGAGGAGGGAGAGGAGGAGAAGAGCTGAGTGGAGGAGGGTTGTAC
CGGTGGCCGAGGGCATGGGGGGACAGAAGCGAGAGGCCGTGAGAGCGAGG
AGTGATGACGGCTCTGTCGGTGCGCGTGGATGAAAGAGAGTGAGAGAGAG
AGAGGCAGCGTCCATGTTCTCGTTTTCTGCTGATAGCCTTAACGTATATA
TAGACAACATATTTGTACCATACATGTGTATAGTAGCAATATGGTCGATT
CAAATGTTAACGGTTTAAACCCCCAAAATCTGAAGCTCGACATGGTAAGA
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protein sequence of NO25G01820.1

>NO25G01820.1-protein ID=NO25G01820.1-protein|Name=NO25G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLHHAKFAGLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINV
AGSFVLGALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKL
GTAIGYVLFNNVGGVLAAALAIKLFTGKGGFGGGGGLGGKGGGGIGGFLT
SPLSFAPSSLPAATTTMRAGMMKGGREGVREGRAATTGAAAEVVGRGTGL
LPVPAVGEWGRGGGRGGEELSGGGLYRWPRAWGDRSERP*
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Synonyms
Publications