NO25G01820.1, NO25G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01820.1
Unique NameNO25G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr25:544300..545849 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:544300..545849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01820.1 vs.
Match: EWM21691.1 (camphor resistance protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 1.300e-25
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 MLHHAKFAGLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINVAGSFVLGALSVSSHVDPRLKLMMGVGFCG 80
            ML H +  GL LDG AIGSGA CGALLRYGA+KVQE  KC PWAIP INVAGSFVL ALSVS+ VDPR +LM+GVGFCG
Sbjct:   52 MLFHLRHTGLWLDGMAIGSGAVCGALLRYGAVKVQERTKCAPWAIPCINVAGSFVLSALSVSTQVDPRFRLMLGVGFCG 130
The following BLAST results are available for this feature:
BLAST of NO25G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21691.11.300e-2575.95camphor resistance protein, partial [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01820NO25G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01820.1NO25G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01820.1.cds1NO25G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01820.1.cds2NO25G01820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01820.1 ID=NO25G01820.1|Name=NO25G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
GCGGCGTTAATGACCCTGTTATCTTTATGTGGGGAAGGGGTCGCGCATAA
GAAAGCGTGTTTGATCGGTGTCAAGGAAGAACAGGAACTCAGTCAGGTGT
CAATCAATGCTATCGACCTGCCAGCAGCTGCCGACCCTTTTCACGCCTTG
CCTCCCCCAAGCTACATGTGCACACAACGAGTTCTGTGTAATGTCCCTGT
CCTTGTCCTGGATTTCACCCAAAAAATGCCGGGAACACAAAGCACATGCG
AGCCTCGGGGTTGGATTTGAAGGCTCTGCAACAGTAACAGACCACTGCTC
GCTTGAACCACCACCCCGGAATAGCAATAGAGCGACAAAGCAGGACGCCT
GCACTGGTGAAAAGGCACCAGTTCCCGGTCTTTTTTTATTTTACAGAGAA
AGATTAAACAAAAACAACATTACTTTGTTAGGCTCCCCTAGCACCCTCCA
ACACACCCAACGCACCGACAACCGCACGCACCATCCCAACCGCATTAATG
CTCCACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGATTGG
GAGCGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGGTGC
AGGAGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTAGCG
GGGTCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCCCAG
GTTGAAACTGATGATGGGAGTTGGATTTTGTGGCTCCCTCACAACTTTCT
CCACCTTCTCAGTCGATATCGTCCATCTGCTACATGCAGGCAAACTGGGC
ACGGCCATTGGATACGTCCTCTTCAACAATGTAGGGGGTGTCCTTGCGGC
CGCCTTGGCAATCAAGCTCTTTACTGGGAAAGGAGGATTTGGAGGAGGGG
GGGGGCTAGGTGGTAAGGGTGGAGGAGGGATCGGAGGGTTTCTCACCTCC
CCGCTTTCTTTCGCTCCCTCGTCCTTGCCGGCGGCGACGACGACGATGAG
GGCGGGAATGATGAAGGGGGGGAGGGAAGGAGTGAGGGAGGGGCGCGCAG
CAACAACGGGAGCAGCAGCAGAAGTGGTAGGGAGGGGAACGGGCCTACTG
CCTGTGCCGGCGGTGGGTGAATGGGGGCGAGGAGGAGGGAGAGGAGGAGA
AGAGCTGAGTGGAGGAGGGTTGTACCGGTGGCCGAGGGCATGGGGGGACA
GAAGCGAGAGGCCGTGAGAGCGAGGAGTGATGACGGCTCTGTCGGTGCGC
GTGGATGAAAGAGAGTGAGAGAGAGAGAGGCAGCGTCCATGTTCTCGTTT
TCTGCTGATAGCCTTAACGTATATATAGACAACATATTTGTACCATACAT
GTGTATAGTAGCAATATGGTCGATTCAAATGTTAACGGTTTAAACCCCCA
AAATCTGAAGCTCGACATGGTAAGA
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protein sequence of NO25G01820.1

>NO25G01820.1-protein ID=NO25G01820.1-protein|Name=NO25G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLHHAKFAGLLLDGAAIGSGAFCGALLRYGAMKVQEHYKCGPWAIPVINV
AGSFVLGALSVSSHVDPRLKLMMGVGFCGSLTTFSTFSVDIVHLLHAGKL
GTAIGYVLFNNVGGVLAAALAIKLFTGKGGFGGGGGLGGKGGGGIGGFLT
SPLSFAPSSLPAATTTMRAGMMKGGREGVREGRAATTGAAAEVVGRGTGL
LPVPAVGEWGRGGGRGGEELSGGGLYRWPRAWGDRSERP*
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mRNA from alignment at chr25:544300..545849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01820.1 ID=NO25G01820.1|Name=NO25G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at chr25:544300..545849- (Nannochloropsis oceanica)
GCGGCGTTAATGACCCTGTTATCTTTATGTGGGGAAGGGGTCGCGCATAA
GAAAGCGTGTTTGATCGGTGTCAAGGAAGAACAGGAACTCAGTCAGGTGT
CAATCAATGCTATCGACCTGCCAGCAGCTGCCGACCCTTTTCACGCCTTG
CCTCCCCCAAGCTACATGTGCACACAACGAGTTCTGTGTAATGTCCCTGT
CCTTGTCCTGGATTTCACCCAAAAAATGCCGGGAACACAAAGCACATGCG
AGCCTCGGGGTTGGATTTGAAGGCTCTGCAACAGTAACAGACCACTGCTC
GCTTGAACCACCACCCCGGAATAGCAATAGAGCGACAAAGCAGGACGCCT
GCACTGGTGAAAAGGCACCAGTTCCCGGTCTTTTTTTATTTTACAGAGAA
AGATTAAACAAAAACAACATTACTTTGTTAGGCTCCCCTAGCACCCTCCA
ACACACCCAACGCACCGACAACCGCACGCACCATCCCAACCGCATTAATG
CTCCACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGATTGG
GAGCGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGGTGC
AGGAGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTAGCG
GGGTCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCCCAG
GTTGAAACTGATGATGGGAGTTGGATTTTGTGGTACGTGCAGAGAGGGTG
GGAGGAATTGAAGGAGGGGGAGCGTGTGTGTGTGGGCATGGAAACCGCCG
TTGATCCTACCAACCCCCATTTCCTTCCTTCCCTCCTTTCCCTCCCCCTC
TCCACAGGCTCCCTCACAACTTTCTCCACCTTCTCAGTCGATATCGTCCA
TCTGCTACATGCAGGCAAACTGGGCACGGCCATTGGATACGTCCTCTTCA
ACAATGTAGGGGGTGTCCTTGCGGCCGCCTTGGCAATCAAGCTCTTTACT
GGGAAAGGAGGATTTGGAGGAGGGGGGGGGCTAGGTGGTAAGGGTGGAGG
AGGGATCGGAGGGTTTCTCACCTCCCCGCTTTCTTTCGCTCCCTCGTCCT
TGCCGGCGGCGACGACGACGATGAGGGCGGGAATGATGAAGGGGGGGAGG
GAAGGAGTGAGGGAGGGGCGCGCAGCAACAACGGGAGCAGCAGCAGAAGT
GGTAGGGAGGGGAACGGGCCTACTGCCTGTGCCGGCGGTGGGTGAATGGG
GGCGAGGAGGAGGGAGAGGAGGAGAAGAGCTGAGTGGAGGAGGGTTGTAC
CGGTGGCCGAGGGCATGGGGGGACAGAAGCGAGAGGCCGTGAGAGCGAGG
AGTGATGACGGCTCTGTCGGTGCGCGTGGATGAAAGAGAGTGAGAGAGAG
AGAGGCAGCGTCCATGTTCTCGTTTTCTGCTGATAGCCTTAACGTATATA
TAGACAACATATTTGTACCATACATGTGTATAGTAGCAATATGGTCGATT
CAAATGTTAACGGTTTAAACCCCCAAAATCTGAAGCTCGACATGGTAAGA
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Coding sequence (CDS) from alignment at chr25:544300..545849-

>NO25G01820.1 ID=NO25G01820.1|Name=NO25G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr25:544300..545849- (Nannochloropsis oceanica)
ATGCTCCACCACGCTAAATTTGCCGGCTTGCTCCTCGACGGGGCCGCGAT
TGGGAGCGGAGCGTTTTGCGGGGCTTTGCTTCGGTATGGGGCGATGAAGG
TGCAGGAGCATTACAAATGCGGCCCCTGGGCCATCCCGGTGATCAATGTA
GCGGGGTCGTTCGTGTTGGGGGCGTTGTCTGTGAGTAGCCATGTTGACCC
CAGGTTGAAACTGATGATGGGAGTTGGATTTTGTGGCTCCCTCACAACTT
TCTCCACCTTCTCAGTCGATATCGTCCATCTGCTACATGCAGGCAAACTG
GGCACGGCCATTGGATACGTCCTCTTCAACAATGTAGGGGGTGTCCTTGC
GGCCGCCTTGGCAATCAAGCTCTTTACTGGGAAAGGAGGATTTGGAGGAG
GGGGGGGGCTAGGTGGTAAGGGTGGAGGAGGGATCGGAGGGTTTCTCACC
TCCCCGCTTTCTTTCGCTCCCTCGTCCTTGCCGGCGGCGACGACGACGAT
GAGGGCGGGAATGATGAAGGGGGGGAGGGAAGGAGTGAGGGAGGGGCGCG
CAGCAACAACGGGAGCAGCAGCAGAAGTGGTAGGGAGGGGAACGGGCCTA
CTGCCTGTGCCGGCGGTGGGTGAATGGGGGCGAGGAGGAGGGAGAGGAGG
AGAAGAGCTGAGTGGAGGAGGGTTGTACCGGTGGCCGAGGGCATGGGGGG
ACAGAAGCGAGAGGCCGTGA
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Synonyms
Publications