NO25G01810, NO25G01810 (gene) Nannochloropsis oceanica

Overview
NameNO25G01810
Unique NameNO25G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1677
Alignment locationchr25:542446..544122 +

Link to JBrowse

Properties
Property NameValue
DescriptionWD40/YVTN repeat-like-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:542446..544122 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011044Quino_amine_DH_bsu
Homology
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BLAST of NO25G01810 vs. NCBI_GenBank
Match: EWM21690.1 (WD40/YVTN repeat-like-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 1.200e-47
Identity = 147/330 (44.55%), Postives = 174/330 (52.73%), Query Frame = 0 
Query:   13 PSVYIYNPSSSSAAA-----ATQAGYPSFFSTGGGLQATRLAALNAQTCFIACHHNIFRLALTYPAPPPFSSSTAGQQHQHQQVTPLTRMAFQRSPLFSPSPVVLFLFQASHKPTEVQHLCFIPNKQALAAIDSAATVHLYSRP--SXXXXXXXXXXXXXXXPGDFPRFGWAGLAFDPHHPSRLATLRTYGQVLSFLDVSPSS---SSSSTSFHPLWDAPTALAYLSPSSLHSCSFSVFSCSSSFLAVAEGYFFSLWDERCASPCEAREQPLPLTRIVTLEWREREKDGEREGGQVLRGMEGGRMGGGGELLVVGEEGVVMLYDMKTLGQ 333
            P +Y+Y+P SS            A YP+FFS  GG QATRLAAL+  TC++A H ++FRL L YP    FSSS+         +  L  +A  R                S    E+Q L   P+K  LAAI+S ATVHLYS P  S               PG+FP FGWAGLAF PH+PSRLAT+R YGQ L+FLD++ SS   SSS  S H L D PT+L YL PSSL           S  LAVAEG  FSLWDER A PC AREQPLPLTRI  L        G                 G   LLV GE+GV+M YD++ L +
Sbjct:   17 PFIYMYHPLSSPLTTPRPLKPPDASYPAFFS-AGGQQATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPP---SHLRLLQHVAVDRLLPXXXXXXXXXXXXGS----EIQSLALHPDKTRLAAINSMATVHLYSLPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQTLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYL-PSSL-----------SPLLAVAEGSSFSLWDERDAHPCIAREQPLPLTRIRAL--------GRXXXXXXXXXXXXXXXXG---LLVAGEDGVLMRYDLRCLSR 315
The following BLAST results are available for this feature:
BLAST of NO25G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21690.11.200e-4744.55WD40/YVTN repeat-like-containing domain protein [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01810.1NO25G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100939g2gene8739Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01810.1NO25G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01810 ID=NO25G01810|Name=NO25G01810|organism=Nannochloropsis oceanica|type=gene|length=1677bp
ATGCCTACCTCTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACAT
TTATAATCCCTCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACC
CTTCCTTTTTCTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCC
TTGAACGCCCAAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCT
CGCCCTTACTTACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGC
AGCAGCATCAACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAG
CGCTCACCCCTCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGC
ATCACACAAACCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGC
AGGCCCTCGCGGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGC
CCCTCTTCCAGTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCC
TCCAGGGGATTTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTC
ATCATCCTTCTCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCC
TTTCTCGACGTCTCTCCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCC
GCTCTGGGACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTC
ACTCCTGCTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTC
GCTGAGGGTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTG
TGAGGCGCGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAAT
GGAGGGAAAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGG
GGAATGGAAGGAGGGAGGATGGGAGGGGGGGGGGAGCTATTGGTCGTGGG
GGAGGAAGGGGTGGTGATGCTCTATGATATGAAGACACTTGGCCAGGCCG
GCGGTGAAGGAGGGAGGAGGGAGGGAGGGAGGGATGGGGGGAGGAGGGGT
CAGACAGCAGGCATCAATTCGATgtgagacaaggtggagggcgccagtga
agctcagcgtggtggcgatgctgtcggggggagggagggagggaggcagg
gaggaagagaggcaagggagggggggagtgaggttgtatgtcacgggttt
agattcggaattgttggcctgcgcggtgtcgggaggagggagaaggaagg
agggaggaagcggaggagaggggagctacgggctgcagccccttaccaag
caaaagcgacggatgcagagagaagaggaaaaagaaaaagaagaaaagag
ggggaaagaaaaagcacgatttgaacaagggaaggaggaagggataggga
cgaggcgtccacaattccacacttcgagggaggcgggaagggagggaggg
agggcaaggtgctgctggtacagggccctgcctctcatcctagCGCTAGC
CGGCTCCATGAGGCCTTCACGGGCTCGGTCCGTGCGGGTGCCCGGTGGGT
GGGCCTGGGGTTGGTGAGGACGGAGGAAGGGGGGGAGGAGGAAGAGGTGA
TTCTAGGGGTGAGTGACAAGGGAACCATCCATGCAGTGAGGCATGCAGAG
AGGATGGGTGGTGGTGATTGGTGGTGA
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protein sequence of NO25G01810.1

>NO25G01810.1-protein ID=NO25G01810.1-protein|Name=NO25G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MPTSPLLPSIVGPSVYIYNPSSSSAAAATQAGYPSFFSTGGGLQATRLAA
LNAQTCFIACHHNIFRLALTYPAPPPFSSSTAGQQHQHQQVTPLTRMAFQ
RSPLFSPSPVVLFLFQASHKPTEVQHLCFIPNKQALAAIDSAATVHLYSR
PSSSPTSTPSSFPSPAPPGDFPRFGWAGLAFDPHHPSRLATLRTYGQVLS
FLDVSPSSSSSSTSFHPLWDAPTALAYLSPSSLHSCSFSVFSCSSSFLAV
AEGYFFSLWDERCASPCEAREQPLPLTRIVTLEWREREKDGEREGGQVLR
GMEGGRMGGGGELLVVGEEGVVMLYDMKTLGQAGGEGGRREGGRDGGRRG
QTAGINSIASRLHEAFTGSVRAGARWVGLGLVRTEEGGEEEEVILGVSDK
GTIHAVRHAERMGGGDWW*
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Synonyms
Publications