NO25G01810.1, NO25G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01810.1
Unique NameNO25G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr25:542446..544122 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:542446..544122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01810.1 vs.
Match: EWM21690.1 (WD40/YVTN repeat-like-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 8.800e-67
Identity = 194/396 (48.99%), Postives = 236/396 (59.60%), Query Frame = 0 
Query:   13 PSVYIYNPSSSSAAAAT-----QAGYPSFFSTGGGLQATRLAALNAQTCFIACHHNIFRLALTYPAPPPFSSSTAGQQHQHQQVTPLTRMAFQRSPLFSPSPVVLFLFQASHKPTEVQHLCFIPNKQALAAIDSAATVHLYSRPSSS--PTSTPSSFPSPAPPGDFPRFGWAGLAFDPHHPSRLATLRTYGQVLSFLDVSPSS---SSSSTSFHPLWDAPTALAYLSPSSLHSCSFSVFSCSSSFLAVAEGYFFSLWDERCASPCEAREQPLPLTRIVTLEWREREKDGEREGGQVLRGMEGGRMGGGGELLVVGEEGVVMLYDMKTLG-------QAGGEGGRREGGRDGGRRGQTAGINSIASRLHEAFTGSVRAG-ARWVGLGLVRTEEGGEE 391
            P +Y+Y+P SS            A YP+FFS GG  QATRLAAL+  TC++A H ++FRL L YP    FSSS+      H ++  L  +A  R  L  PS    F     H  +E+Q L   P+K  LAAI+S ATVHLYS P+SS  PTS P+S PSPAPPG+FP FGWAGLAF PH+PSRLAT+R YGQ L+FLD++ SS   SSS  S H L D PT+L YL PSSL           S  LAVAEG  FSLWDER A PC AREQPLPLTRI     R   ++G REGG+     EGGR GG G LLV GE+GV+M YD++ L        + GG+GG REGGR+GG+ G    + S+  R    +   V+         G  R  EGG+E
Sbjct:   17 PFIYMYHPLSSPLTTPRPLKPPDASYPAFFSAGGQ-QATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPP-SHLRL--LQHVAVDRL-LPPPSS---FTPSRPHPGSEIQSLALHPDKTRLAAINSMATVHLYSLPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQTLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYL-PSSL-----------SPLLAVAEGSSFSLWDERDAHPCIAREQPLPLTRI-----RALGREGGREGGR-----EGGREGGKG-LLVAGEDGVLMRYDLRCLSRPVERTREGGGKGG-REGGREGGKEG--GNVRSLVLRCQARWRAPVKHNIIALFFAGRKRGREGGKE 378
The following BLAST results are available for this feature:
BLAST of NO25G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21690.18.800e-6748.99WD40/YVTN repeat-like-containing domain protein [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01810NO25G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01810.1NO25G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01810.1.cds1NO25G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01810.1.cds2NO25G01810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01810.1 ID=NO25G01810.1|Name=NO25G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
ATGCCTACCTCTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACAT
TTATAATCCCTCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACC
CTTCCTTTTTCTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCC
TTGAACGCCCAAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCT
CGCCCTTACTTACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGC
AGCAGCATCAACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAG
CGCTCACCCCTCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGC
ATCACACAAACCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGC
AGGCCCTCGCGGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGC
CCCTCTTCCAGTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCC
TCCAGGGGATTTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTC
ATCATCCTTCTCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCC
TTTCTCGACGTCTCTCCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCC
GCTCTGGGACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTC
ACTCCTGCTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTC
GCTGAGGGTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTG
TGAGGCGCGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAAT
GGAGGGAAAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGG
GGAATGGAAGGAGGGAGGATGGGAGGGGGGGGGGAGCTATTGGTCGTGGG
GGAGGAAGGGGTGGTGATGCTCTATGATATGAAGACACTTGGCCAGGCCG
GCGGTGAAGGAGGGAGGAGGGAGGGAGGGAGGGATGGGGGGAGGAGGGGT
CAGACAGCAGGCATCAATTCGATCGCTAGCCGGCTCCATGAGGCCTTCAC
GGGCTCGGTCCGTGCGGGTGCCCGGTGGGTGGGCCTGGGGTTGGTGAGGA
CGGAGGAAGGGGGGGAGGAGGAAGAGGTGATTCTAGGGGTGAGTGACAAG
GGAACCATCCATGCAGTGAGGCATGCAGAGAGGATGGGTGGTGGTGATTG
GTGGTGA
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protein sequence of NO25G01810.1

>NO25G01810.1-protein ID=NO25G01810.1-protein|Name=NO25G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MPTSPLLPSIVGPSVYIYNPSSSSAAAATQAGYPSFFSTGGGLQATRLAA
LNAQTCFIACHHNIFRLALTYPAPPPFSSSTAGQQHQHQQVTPLTRMAFQ
RSPLFSPSPVVLFLFQASHKPTEVQHLCFIPNKQALAAIDSAATVHLYSR
PSSSPTSTPSSFPSPAPPGDFPRFGWAGLAFDPHHPSRLATLRTYGQVLS
FLDVSPSSSSSSTSFHPLWDAPTALAYLSPSSLHSCSFSVFSCSSSFLAV
AEGYFFSLWDERCASPCEAREQPLPLTRIVTLEWREREKDGEREGGQVLR
GMEGGRMGGGGELLVVGEEGVVMLYDMKTLGQAGGEGGRREGGRDGGRRG
QTAGINSIASRLHEAFTGSVRAGARWVGLGLVRTEEGGEEEEVILGVSDK
GTIHAVRHAERMGGGDWW*
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mRNA from alignment at chr25:542446..544122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01810.1 ID=NO25G01810.1|Name=NO25G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at chr25:542446..544122+ (Nannochloropsis oceanica)
ATGCCTACCTCTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACAT
TTATAATCCCTCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACC
CTTCCTTTTTCTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCC
TTGAACGCCCAAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCT
CGCCCTTACTTACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGC
AGCAGCATCAACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAG
CGCTCACCCCTCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGC
ATCACACAAACCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGC
AGGCCCTCGCGGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGC
CCCTCTTCCAGTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCC
TCCAGGGGATTTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTC
ATCATCCTTCTCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCC
TTTCTCGACGTCTCTCCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCC
GCTCTGGGACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTC
ACTCCTGCTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTC
GCTGAGGGTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTG
TGAGGCGCGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAAT
GGAGGGAAAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGG
GGAATGGAAGGAGGGAGGATGGGAGGGGGGGGGGAGCTATTGGTCGTGGG
GGAGGAAGGGGTGGTGATGCTCTATGATATGAAGACACTTGGCCAGGCCG
GCGGTGAAGGAGGGAGGAGGGAGGGAGGGAGGGATGGGGGGAGGAGGGGT
CAGACAGCAGGCATCAATTCGATGTGAGACAAGGTGGAGGGCGCCAGTGA
AGCTCAGCGTGGTGGCGATGCTGTCGGGGGGAGGGAGGGAGGGAGGCAGG
GAGGAAGAGAGGCAAGGGAGGGGGGGAGTGAGGTTGTATGTCACGGGTTT
AGATTCGGAATTGTTGGCCTGCGCGGTGTCGGGAGGAGGGAGAAGGAAGG
AGGGAGGAAGCGGAGGAGAGGGGAGCTACGGGCTGCAGCCCCTTACCAAG
CAAAAGCGACGGATGCAGAGAGAAGAGGAAAAAGAAAAAGAAGAAAAGAG
GGGGAAAGAAAAAGCACGATTTGAACAAGGGAAGGAGGAAGGGATAGGGA
CGAGGCGTCCACAATTCCACACTTCGAGGGAGGCGGGAAGGGAGGGAGGG
AGGGCAAGGTGCTGCTGGTACAGGGCCCTGCCTCTCATCCTAGCGCTAGC
CGGCTCCATGAGGCCTTCACGGGCTCGGTCCGTGCGGGTGCCCGGTGGGT
GGGCCTGGGGTTGGTGAGGACGGAGGAAGGGGGGGAGGAGGAAGAGGTGA
TTCTAGGGGTGAGTGACAAGGGAACCATCCATGCAGTGAGGCATGCAGAG
AGGATGGGTGGTGGTGATTGGTGGTGA
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Coding sequence (CDS) from alignment at chr25:542446..544122+

>NO25G01810.1 ID=NO25G01810.1|Name=NO25G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr25:542446..544122+ (Nannochloropsis oceanica)
ATGCCTACCTCTCCCCTCCTCCCCTCCATCGTCGGGCCTTCCGTCTACAT
TTATAATCCCTCGTCGTCCTCTGCGGCGGCGGCAACGCAAGCTGGGTACC
CTTCCTTTTTCTCCACGGGCGGTGGTCTACAAGCCACGCGCCTGGCCGCC
TTGAACGCCCAAACCTGCTTCATTGCCTGCCACCACAACATCTTCCGGCT
CGCCCTTACTTACCCCGCTCCTCCTCCTTTCTCCTCCTCGACTGCCGGGC
AGCAGCATCAACATCAACAAGTTACGCCTCTGACAAGAATGGCCTTCCAG
CGCTCACCCCTCTTTTCCCCCTCCCCCGTCGTCCTCTTCCTCTTCCAAGC
ATCACACAAACCCACGGAAGTCCAACATCTGTGCTTCATTCCCAACAAGC
AGGCCCTCGCGGCCATTGACAGCGCAGCCACGGTCCACCTCTACTCTCGC
CCCTCTTCCAGTCCGACCTCTACCCCTTCCTCCTTCCCCTCCCCTGCCCC
TCCAGGGGATTTTCCTCGGTTTGGCTGGGCAGGCTTGGCCTTCGATCCTC
ATCATCCTTCTCGCCTTGCCACTTTAAGAACCTACGGTCAAGTCCTCTCC
TTTCTCGACGTCTCTCCCTCCTCCTCCTCCTCCTCCACCTCATTTCACCC
GCTCTGGGACGCCCCCACCGCGCTCGCCTACCTCTCCCCTTCCTCCCTTC
ACTCCTGCTCCTTCTCTGTTTTCTCTTGTTCTTCTTCGTTCCTCGCAGTC
GCTGAGGGTTATTTCTTCTCCCTGTGGGATGAGAGGTGTGCTTCCCCCTG
TGAGGCGCGCGAGCAGCCTCTTCCCCTGACGCGGATCGTGACGTTGGAAT
GGAGGGAAAGAGAGAAGGATGGGGAGAGGGAGGGGGGGCAGGTGTTGAGG
GGAATGGAAGGAGGGAGGATGGGAGGGGGGGGGGAGCTATTGGTCGTGGG
GGAGGAAGGGGTGGTGATGCTCTATGATATGAAGACACTTGGCCAGGCCG
GCGGTGAAGGAGGGAGGAGGGAGGGAGGGAGGGATGGGGGGAGGAGGGGT
CAGACAGCAGGCATCAATTCGATCGCTAGCCGGCTCCATGAGGCCTTCAC
GGGCTCGGTCCGTGCGGGTGCCCGGTGGGTGGGCCTGGGGTTGGTGAGGA
CGGAGGAAGGGGGGGAGGAGGAAGAGGTGATTCTAGGGGTGAGTGACAAG
GGAACCATCCATGCAGTGAGGCATGCAGAGAGGATGGGTGGTGGTGATTG
GTGGTGA
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Synonyms
Publications