NO25G01680, NO25G01680 (gene) Nannochloropsis oceanica

Overview
NameNO25G01680
Unique NameNO25G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr25:472705..474353 -

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Properties
Property NameValue
DescriptionClathrin assembly small subunit protein ap19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:472705..474353 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Homology
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: EWM21665.1 (clathrin assembly small subunit protein ap19 [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 3.300e-78
Identity = 149/161 (92.55%), Postives = 157/161 (97.52%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNLASMVAQMSRTR 162
            MINFLLLVSRQGKTRLSKWY+HY  KEKARAIRELT LVLARAPKMCNFIEWRDKK++YKRYASLFFIAAV+++DNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSKNEVLRVCSQMDELMEEQKDDNLA+MVAQMSR+R
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLAAMVAQMSRSR 161
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: CBN76726.1 (Clathrin assembly complex, small subunit [Ectocarpus siliculosus])

HSP 1 Score: 255.0 bits (650), Expect = 1.600e-64
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MINFLLL+SRQGKTRL+KWY+ Y AKEKAR +RE+T+ VLARA KMCNF+EWRDKKIVYKRYASLFF+A ++  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG+LQESSK EVLRVCSQMD+LMEE K++
Sbjct:    1 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEE 148
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: XP_009840272.1 (hypothetical protein H257_14209 [Aphanomyces astaci] >ETV70175.1 hypothetical protein H257_14209 [Aphanomyces astaci])

HSP 1 Score: 233.4 bits (594), Expect = 4.900e-58
Identity = 111/148 (75.00%), Postives = 127/148 (85.81%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MI+F+LLVSRQGKTRLSKWY   P K+KAR IRE+TTLVL R  K CNFIEW+D+KIVYKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSAVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: XP_008878532.1 (hypothetical protein H310_12992 [Aphanomyces invadans] >ETV92762.1 hypothetical protein H310_12992 [Aphanomyces invadans])

HSP 1 Score: 233.4 bits (594), Expect = 4.900e-58
Identity = 111/148 (75.00%), Postives = 127/148 (85.81%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MI+F+LLVSRQGKTRLSKWY   P K+KAR IRE+TTLVL R  K CNFIEW+D+KIVYKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: XP_009036665.1 (hypothetical protein AURANDRAFT_25892 [Aureococcus anophagefferens] >XP_009043101.1 hypothetical protein AURANDRAFT_35471 [Aureococcus anophagefferens] >EGB02199.1 hypothetical protein AURANDRAFT_35471 [Aureococcus anophagefferens] >EGB08675.1 hypothetical protein AURANDRAFT_25892 [Aureococcus anophagefferens])

HSP 1 Score: 231.1 bits (588), Expect = 2.400e-57
Identity = 121/169 (71.60%), Postives = 135/169 (79.88%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWR-DKKIVYKRYASLFFI--------------------AAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MINF+LLVSRQGKTRL+KWYE Y  KEKAR +RE T  VLARAPKMCNFIEWR DKKIVYKRYASLFFI                    A V++ DNELITLEMIHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI G+L+ESSK EVL +C+QMDE+M+E K++
Sbjct:    1 MINFMLLVSRQGKTRLTKWYESYSTKEKARIVREAT--VLARAPKMCNFIEWRADKKIVYKRYASLFFICCGDRRRERAPRRRKLKFLPAGVDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEE 167
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: OQR96893.1 (Aps1, sigma subunit of the adaptin 1 complex [Thraustotheca clavata])

HSP 1 Score: 229.6 bits (584), Expect = 7.100e-57
Identity = 109/148 (73.65%), Postives = 128/148 (86.49%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MI+F+LLVSRQGKTRLSKWY   P K+KAR IR++T+LVL R  K CNFIEW+D+KIVYKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SK EVLRVC+Q ++ MEE K++
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIRDVTSLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEIIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEVLRVCNQQEDFMEETKEE 148
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: XP_008607765.1 (hypothetical protein SDRG_03896 [Saprolegnia diclina VS20] >XP_012203525.1 hypothetical protein SPRG_09014 [Saprolegnia parasitica CBS 223.65] >EQC38941.1 hypothetical protein SDRG_03896 [Saprolegnia diclina VS20] >KDO25715.1 hypothetical protein SPRG_09014 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 229.2 bits (583), Expect = 9.300e-57
Identity = 108/148 (72.97%), Postives = 128/148 (86.49%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            MI+F+LLVSRQGKTRLSKWY   P K+KAR IR++T+LVL R  K CNFIEW+D+KIVYKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SK E+LRVC+Q ++ MEE K++
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSAVPLKDKARIIRDVTSLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEIIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCNQQEDFMEETKEE 148
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: CCI46255.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 228.4 bits (581), Expect = 1.600e-56
Identity = 110/151 (72.85%), Postives = 130/151 (86.09%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNLA 152
            MI  +LLVSRQGKTRL+KWY +   KEKAR IRE+TTLVL+R PK CNFIE++DKKIVYKRYASLFFIA +   +NELITLE IHL+VE+LDRYFGNVCELDIIFNFHKAYYILDELF+GG LQESSK EVLR+C+Q ++ ++E K++  A
Sbjct:    1 MIESILLVSRQGKTRLAKWYINATIKEKARMIREITTLVLSRPPKQCNFIEFKDKKIVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFVGGYLQESSKREVLRICTQQEDYVDESKEEGFA 151
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: CCA18011.1 (Clathrin assembly complex putative [Albugo laibachii Nc14])

HSP 1 Score: 228.0 bits (580), Expect = 2.100e-56
Identity = 110/151 (72.85%), Postives = 130/151 (86.09%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNLA 152
            MI  +LLVSRQGKTRL+KWY +   KEKAR IRE+TTLVL+R PK CNFIE++DKKIVYKRYASLFFIA +   +NELITLE IHL+VE+LDRYFGNVCELDIIFNFHKAYYILDELF+GG LQESSK EVLR+C+Q ++ ++E K++  A
Sbjct:    1 MIESILLVSRQGKTRLAKWYINATIKEKARMIREITTLVLSRPPKQCNFIEFKDKKIVYKRYASLFFIACISKDENELITLEAIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFLGGYLQESSKREVLRICTQQEDYVDESKEEGFA 151
[Close]
BLAST of NO25G01680 vs. NCBI_GenBank
Match: XP_009840271.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV70176.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 227.3 bits (578), Expect = 3.500e-56
Identity = 108/144 (75.00%), Postives = 123/144 (85.42%), Query Frame = 0 
Query:    5 LLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDD 149
            +LLVSRQGKTRLSKWY   P K+KAR IRE+TTLVL R  K CNFIEW+D+KIVYKRYASL+F+A +   +NELITLE+IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SK E+LRVC Q ++ MEE K+D
Sbjct:    1 MLLVSRQGKTRLSKWYSAVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 144
The following BLAST results are available for this feature:
BLAST of NO25G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21665.13.300e-7892.55clathrin assembly small subunit protein ap19 [Nann... [more]
CBN76726.11.600e-6482.43Clathrin assembly complex, small subunit [Ectocarp... [more]
XP_009840272.14.900e-5875.00hypothetical protein H257_14209 [Aphanomyces astac... [more]
XP_008878532.14.900e-5875.00hypothetical protein H310_12992 [Aphanomyces invad... [more]
XP_009036665.12.400e-5771.60hypothetical protein AURANDRAFT_25892 [Aureococcus... [more]
OQR96893.17.100e-5773.65Aps1, sigma subunit of the adaptin 1 complex [Thra... [more]
XP_008607765.19.300e-5772.97hypothetical protein SDRG_03896 [Saprolegnia dicli... [more]
CCI46255.11.600e-5672.85unnamed protein product [Albugo candida][more]
CCA18011.12.100e-5672.85Clathrin assembly complex putative [Albugo laibach... [more]
XP_009840271.13.500e-5675.00hypothetical protein, variant [Aphanomyces astaci]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004269NSK004269Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01680.1NO25G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
APS1gene8765Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01680.1NO25G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01680 ID=NO25G01680|Name=NO25G01680|organism=Nannochloropsis oceanica|type=gene|length=1649bp
ATGCGATAGAGCTTTACGGAATGGATATACCATATCTTTCCGGCCTGTCC
AAACAAGCGGTCCAACCTCCTCCATCGGGCGCCGAATGACGAACACTGGT
GCAACGGTCATGAGCGAGAGGGCGTCATGCCTGTGGCTCCGGACAAGAAG
CCACAACATAGTATGCGCAAGCAAATAAACATTGCCATATTCACGAGCTT
TACAATAACTTCTCTCCCTCCATCTGCTCACTGAAATCCGCACACAGAAG
AAAAAGAGAGGCTTGCTGCGGTGCCTTGCCGCTCGCAGACCCGTACGAAG
AGGCGCCCATTCTTGCGCCTTCGTCGTCATGATCAACTTCCTTCTCTTGG
TGAGCCGGCAAGGCAAGACCCGCCTCAGCAAGTGGTACGAGCATTACCCT
GCCAAAGAAAAGGCGCGCGCGATCCGGGAGTTGACGACTTTGGTCTTGGC
TCGGGCCCCCAAGATGTGCAACTTTATCGAGTGGCGGGACAAGAAGgtga
gtttgctgtcgcctttgagaatgggggagaggggtgtggagtgtagggtt
ttgacatgttgtagggtacaaaggtggattacgcggtgcggatgataatc
tgcaatgtgtgttggtctttggatttctgttgtctcgcggagtattatgc
tcgcttgtgggtcgtcgatcatgatggcgatcaggcaagcgaccaagctg
tcctgctcctgcgtctgctggaagatgagactgacatcgctttctttcct
ctccatgccttatagATCGTTTACAAGCGGTATGCATCCCTGTTTTTCAT
CGCAGCTGTCGAAAACACAGACAATGAGCTCATCACTCTCGAGgtaggtt
ggtatgggatttgaagacatacacagagacgaagagagggaacactcctc
atcacttcccctccctcctttctttcctcctctttttcctcctattcatt
caccagATGATCCACCTGTTTGTGGAAATCTTGGACCGTTACTTTGGCAA
CGTCTGCGAGCTCGACATCATTTTCAACTTTCACAAGgtagggagggcga
ggagggaacaaaggtgggggtgctggataagattgagaggattgtggtgg
tggaagaaggaggaaacttgaatgtcggatttttctccctattctatttt
tgggataccagctcgatatctgccgctgccgtgcctccttctcttcagct
tgtttgtcgcctgcgctgtcacgcaaccaacttcaccttaacattccttc
cgtaacgccttccaccctggcggccctccacacagGCATACTACATCCTG
GACGAGCTCTTTATCGGGGGTCAGCTGCAAGAGAGCAGCAAGAACGAAGT
TCTGCGGgtaagtgtttgttgtggaggcccatgtatccgttttagctcca
gcgccttactcttccttatccggctcttttcgcttcatcactcaccagGT
GTGCTCGCAGATGGACGAGTTGATGGAGGAACAGAAGGACGATAATCTAG
CGTCCATGGTGGCGCAAATGTCGCGGACGAGATAGGCAGGGAGAAAAAGA
AGTGCCACACCTAAAGAAACGAGTTCGTAAAAGAAATCCCCTCAAAAACT
TGTAACAAAAGAGAAGTATGGGTTTTTGTCGTTCAGTTTTTGCTCTCTG
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protein sequence of NO25G01680.1

>NO25G01680.1-protein ID=NO25G01680.1-protein|Name=NO25G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFI
EWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCE
LDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNL
ASMVAQMSRTR*
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Synonyms
Publications