NO25G01680.1, NO25G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01680.1
Unique NameNO25G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length928
Alignment locationchr25:472705..474353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:472705..474353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01680.1 vs.
Match: EWM21665.1 (clathrin assembly small subunit protein ap19 [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 3.300e-78
Identity = 149/161 (92.55%), Postives = 157/161 (97.52%), Query Frame = 0 
Query:    1 MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFIEWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNLASMVAQMSRTR 162
            MINFLLLVSRQGKTRLSKWY+HY  KEKARAIRELT LVLARAPKMCNFIEWRDKK++YKRYASLFFIAAV+++DNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSKNEVLRVCSQMDELMEEQKDDNLA+MVAQMSR+R
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDDNLAAMVAQMSRSR 161
The following BLAST results are available for this feature:
BLAST of NO25G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21665.13.300e-7892.55clathrin assembly small subunit protein ap19 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01680NO25G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01680.1NO25G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01680.1.cds1NO25G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01680.1.cds2NO25G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01680.1.cds3NO25G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01680.1.cds4NO25G01680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01680.1.cds5NO25G01680.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01680.1 ID=NO25G01680.1|Name=NO25G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
ATGCGATAGAGCTTTACGGAATGGATATACCATATCTTTCCGGCCTGTCC
AAACAAGCGGTCCAACCTCCTCCATCGGGCGCCGAATGACGAACACTGGT
GCAACGGTCATGAGCGAGAGGGCGTCATGCCTGTGGCTCCGGACAAGAAG
CCACAACATAGTATGCGCAAGCAAATAAACATTGCCATATTCACGAGCTT
TACAATAACTTCTCTCCCTCCATCTGCTCACTGAAATCCGCACACAGAAG
AAAAAGAGAGGCTTGCTGCGGTGCCTTGCCGCTCGCAGACCCGTACGAAG
AGGCGCCCATTCTTGCGCCTTCGTCGTCATGATCAACTTCCTTCTCTTGG
TGAGCCGGCAAGGCAAGACCCGCCTCAGCAAGTGGTACGAGCATTACCCT
GCCAAAGAAAAGGCGCGCGCGATCCGGGAGTTGACGACTTTGGTCTTGGC
TCGGGCCCCCAAGATGTGCAACTTTATCGAGTGGCGGGACAAGAAGATCG
TTTACAAGCGGTATGCATCCCTGTTTTTCATCGCAGCTGTCGAAAACACA
GACAATGAGCTCATCACTCTCGAGATGATCCACCTGTTTGTGGAAATCTT
GGACCGTTACTTTGGCAACGTCTGCGAGCTCGACATCATTTTCAACTTTC
ACAAGGCATACTACATCCTGGACGAGCTCTTTATCGGGGGTCAGCTGCAA
GAGAGCAGCAAGAACGAAGTTCTGCGGGTGTGCTCGCAGATGGACGAGTT
GATGGAGGAACAGAAGGACGATAATCTAGCGTCCATGGTGGCGCAAATGT
CGCGGACGAGATAGGCAGGGAGAAAAAGAAGTGCCACACCTAAAGAAACG
AGTTCGTAAAAGAAATCCCCTCAAAAACTTGTAACAAAAGAGAAGTATGG
GTTTTTGTCGTTCAGTTTTTGCTCTCTG
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protein sequence of NO25G01680.1

>NO25G01680.1-protein ID=NO25G01680.1-protein|Name=NO25G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MINFLLLVSRQGKTRLSKWYEHYPAKEKARAIRELTTLVLARAPKMCNFI
EWRDKKIVYKRYASLFFIAAVENTDNELITLEMIHLFVEILDRYFGNVCE
LDIIFNFHKAYYILDELFIGGQLQESSKNEVLRVCSQMDELMEEQKDDNL
ASMVAQMSRTR*
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mRNA from alignment at chr25:472705..474353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01680.1 ID=NO25G01680.1|Name=NO25G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at chr25:472705..474353- (Nannochloropsis oceanica)
ATGCGATAGAGCTTTACGGAATGGATATACCATATCTTTCCGGCCTGTCC
AAACAAGCGGTCCAACCTCCTCCATCGGGCGCCGAATGACGAACACTGGT
GCAACGGTCATGAGCGAGAGGGCGTCATGCCTGTGGCTCCGGACAAGAAG
CCACAACATAGTATGCGCAAGCAAATAAACATTGCCATATTCACGAGCTT
TACAATAACTTCTCTCCCTCCATCTGCTCACTGAAATCCGCACACAGAAG
AAAAAGAGAGGCTTGCTGCGGTGCCTTGCCGCTCGCAGACCCGTACGAAG
AGGCGCCCATTCTTGCGCCTTCGTCGTCATGATCAACTTCCTTCTCTTGG
TGAGCCGGCAAGGCAAGACCCGCCTCAGCAAGTGGTACGAGCATTACCCT
GCCAAAGAAAAGGCGCGCGCGATCCGGGAGTTGACGACTTTGGTCTTGGC
TCGGGCCCCCAAGATGTGCAACTTTATCGAGTGGCGGGACAAGAAGGTGA
GTTTGCTGTCGCCTTTGAGAATGGGGGAGAGGGGTGTGGAGTGTAGGGTT
TTGACATGTTGTAGGGTACAAAGGTGGATTACGCGGTGCGGATGATAATC
TGCAATGTGTGTTGGTCTTTGGATTTCTGTTGTCTCGCGGAGTATTATGC
TCGCTTGTGGGTCGTCGATCATGATGGCGATCAGGCAAGCGACCAAGCTG
TCCTGCTCCTGCGTCTGCTGGAAGATGAGACTGACATCGCTTTCTTTCCT
CTCCATGCCTTATAGATCGTTTACAAGCGGTATGCATCCCTGTTTTTCAT
CGCAGCTGTCGAAAACACAGACAATGAGCTCATCACTCTCGAGGTAGGTT
GGTATGGGATTTGAAGACATACACAGAGACGAAGAGAGGGAACACTCCTC
ATCACTTCCCCTCCCTCCTTTCTTTCCTCCTCTTTTTCCTCCTATTCATT
CACCAGATGATCCACCTGTTTGTGGAAATCTTGGACCGTTACTTTGGCAA
CGTCTGCGAGCTCGACATCATTTTCAACTTTCACAAGGTAGGGAGGGCGA
GGAGGGAACAAAGGTGGGGGTGCTGGATAAGATTGAGAGGATTGTGGTGG
TGGAAGAAGGAGGAAACTTGAATGTCGGATTTTTCTCCCTATTCTATTTT
TGGGATACCAGCTCGATATCTGCCGCTGCCGTGCCTCCTTCTCTTCAGCT
TGTTTGTCGCCTGCGCTGTCACGCAACCAACTTCACCTTAACATTCCTTC
CGTAACGCCTTCCACCCTGGCGGCCCTCCACACAGGCATACTACATCCTG
GACGAGCTCTTTATCGGGGGTCAGCTGCAAGAGAGCAGCAAGAACGAAGT
TCTGCGGGTAAGTGTTTGTTGTGGAGGCCCATGTATCCGTTTTAGCTCCA
GCGCCTTACTCTTCCTTATCCGGCTCTTTTCGCTTCATCACTCACCAGGT
GTGCTCGCAGATGGACGAGTTGATGGAGGAACAGAAGGACGATAATCTAG
CGTCCATGGTGGCGCAAATGTCGCGGACGAGATAGGCAGGGAGAAAAAGA
AGTGCCACACCTAAAGAAACGAGTTCGTAAAAGAAATCCCCTCAAAAACT
TGTAACAAAAGAGAAGTATGGGTTTTTGTCGTTCAGTTTTTGCTCTCTG
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Coding sequence (CDS) from alignment at chr25:472705..474353-

>NO25G01680.1 ID=NO25G01680.1|Name=NO25G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at chr25:472705..474353- (Nannochloropsis oceanica)
ATGATCAACTTCCTTCTCTTGGTGAGCCGGCAAGGCAAGACCCGCCTCAG
CAAGTGGTACGAGCATTACCCTGCCAAAGAAAAGGCGCGCGCGATCCGGG
AGTTGACGACTTTGGTCTTGGCTCGGGCCCCCAAGATGTGCAACTTTATC
GAGTGGCGGGACAAGAAGATCGTTTACAAGCGGTATGCATCCCTGTTTTT
CATCGCAGCTGTCGAAAACACAGACAATGAGCTCATCACTCTCGAGATGA
TCCACCTGTTTGTGGAAATCTTGGACCGTTACTTTGGCAACGTCTGCGAG
CTCGACATCATTTTCAACTTTCACAAGGCATACTACATCCTGGACGAGCT
CTTTATCGGGGGTCAGCTGCAAGAGAGCAGCAAGAACGAAGTTCTGCGGG
TGTGCTCGCAGATGGACGAGTTGATGGAGGAACAGAAGGACGATAATCTA
GCGTCCATGGTGGCGCAAATGTCGCGGACGAGATAG
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Synonyms
Publications