NO25G01600, NO25G01600 (gene) Nannochloropsis oceanica

Overview
NameNO25G01600
Unique NameNO25G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1648
Alignment locationchr25:451772..453419 -

Link to JBrowse

Properties
Property NameValue
DescriptionClathrin light chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:451772..453419 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
GO:0031410cytoplasmic vesicle
GO:0030659cytoplasmic vesicle membrane
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
GO:0016020membrane
GO:0005905clathrin-coated pit
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain
Homology
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BLAST of NO25G01600 vs. NCBI_GenBank
Match: CBJ28313.1 (Clathrin light chain [Ectocarpus siliculosus])

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-7
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 0 
Query:   74 SALDAFLEEWERKLDAKRGVENEKRSTVIEKARAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEADLEAENPWERVISLIDMQTDVGGPESPSCDLQRLKQMLIQLKAEPL 187
            SALD F+E W+  L  K  +E E ++  +E A+A+                             LE +LE+ENPWERV+SL+D Q++V        D  R+  +LIQLK +P+
Sbjct:  109 SALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELESENPWERVVSLVDTQSEV---VEDFKDTSRMTSILIQLKNDPI 218
The following BLAST results are available for this feature:
BLAST of NO25G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28313.12.700e-733.63Clathrin light chain [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004263NSK004263Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01600.1NO25G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603901gene_8762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01600.1NO25G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01600 ID=NO25G01600|Name=NO25G01600|organism=Nannochloropsis oceanica|type=gene|length=1648bp
GGCGTGGGCGATGCTTCTTACAATGTAAGTTTGGGGGCATGTCTATTTAT
CTAGATCGGTAGAAGAACGAGGACGTGCCAAGCCTGCATAGAGAAATAGT
CAGGAGGCGCAACTGTGGGCATGGCATGGGGTGTCGTCAACGGTCCTTCT
TTCTGCTCGTTGTAAACCATCGCTCATCTTCAGTGTCCCAACTCCCATCC
CGACCAATCAAAAACACATGTGCCGATCTCCCCTTCCTCGCCTACTCTAT
GCGTTACCTGCAGAGCACCGGCTCAGgtatgaaccaattactcgcccctc
ctagtcctgcattctttcgattcccctccttcactgcccttgatgcttca
tccgcccaccccctattgcactcatcattctctctcatgcataaacgcgc
gcacatacgctttccacagCCAATCTTGATGCTGCTCCTGCATCGTACGC
CGAGCTGGATGAGATGCCTACGGAGCTCCCTTCGACCTCGGCCTTGGAgt
gagtgcgggaaagagagggagggagggaggaagggtgggaaggagagacg
gctggttgtttactttatgtgcggagtgaatgagtgcaggagcggtcaag
agaagcctttgagtatttaaatcaatcaaccattctctacttttgaaact
tctagatgtcttgccccctacttctacttctacccaagtctacttccctc
cctccctcttcctccctccccactcccttccctattgccccacgaattcc
caaggggggatgagaaggcaagctggaggcgcagcgaggaagaaacaatg
aggaccaaccgaccgccatcaccaacaaaacacacactactcacgttact
cctttcctcgttccttccctccctcgttccttcccctccctccctccttc
ccctcccgtcagTGCTTTCCTCGAGGAATGGGAACGAAAGTTGGACGCCA
AACGAGGTGTGGAGAACGAGAAGAGGTCCACGGTCATAGAGAAAGCACGG
GCAGAGCTGGCGAAATTCGCGGAGGAGCGAGAGGAGATGAGAGAGAAGAA
GCAGAGTGCGAACAGGAAGGAGGAGCAGgtaaccagggcgggaggaaggg
agggagggacggagggagggggtggggagggcggaggacggaatggcgtg
agatgatggatgagaagaggctgaaggcgaagagtgaaggagacagaggc
gcgattttggtggtggcggcgtgtgagccacaggcctgacgagaccactt
gcacattcctccctccctccctctttttcgggcaagctcgagtagtaata
aactgagttggggactgaagacctctgatagcatgtgatgtaattgacct
catggatatgatgtaatgatgtaattgacctcatagacgtgtcactatcg
gccgcctcggttccatggtgcatgtaactaatcttcccctcccttactct
ctccctccccctttccttcagGTGAAGCTAGAGAAGCTGGAGGCCGACTT
GGAGGCGGAGAATCCCTGGGAGCGTGTGATAAGCCTCATTGATATGCAAA
CTGACGTGGGGGGGCCAGAGTCGCCCTCCTGCGACCTGCAACGGCTGAAG
CAGATGCTGATCCAACTCAAGGCGGAACCGTTGGGGGAAAAGAAATAG
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protein sequence of NO25G01600.1

>NO25G01600.1-protein ID=NO25G01600.1-protein|Name=NO25G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MGCRQRSFFLLVVNHRSSSVSQLPSRPIKNTCADLPFLAYSMRYLQSTGS
ANLDAAPASYAELDEMPTELPSTSALDAFLEEWERKLDAKRGVENEKRST
VIEKARAELAKFAEEREEMREKKQSANRKEEQVKLEKLEADLEAENPWER
VISLIDMQTDVGGPESPSCDLQRLKQMLIQLKAEPLGEKK*
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Synonyms
Publications