NO25G01600.1, NO25G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01600.1
Unique NameNO25G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length698
Alignment locationchr25:451772..453419 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:451772..453419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G01600.1 vs.
Match: CBJ28313.1 (Clathrin light chain [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 5.700e-13
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = 0 
Query:   74 SALDAFLEEWERKLDAKRGVENEKRSTVIEKARAELAKFAEEREEMREKKQSANRKEEQVKLEKLEADLEAENPWERVISLIDMQTDVGGPESPSCDLQRLKQMLIQLKAEPL 187
            SALD F+E W+  L  K  +E E ++  +E A+A+L   + ER   +E K   NR++EQ+ LE+LE +LE+ENPWERV+SL+D Q++V        D  R+  +LIQLK +P+
Sbjct:  109 SALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELESENPWERVVSLVDTQSEV---VEDFKDTSRMTSILIQLKNDPI 218
The following BLAST results are available for this feature:
BLAST of NO25G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28313.15.700e-1343.36Clathrin light chain [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01600NO25G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01600.1NO25G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01600.1.cds1NO25G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01600.1.cds2NO25G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01600.1.cds3NO25G01600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01600.1.cds4NO25G01600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01600.1 ID=NO25G01600.1|Name=NO25G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
GGCGTGGGCGATGCTTCTTACAATGTAAGTTTGGGGGCATGTCTATTTAT
CTAGATCGGTAGAAGAACGAGGACGTGCCAAGCCTGCATAGAGAAATAGT
CAGGAGGCGCAACTGTGGGCATGGCATGGGGTGTCGTCAACGGTCCTTCT
TTCTGCTCGTTGTAAACCATCGCTCATCTTCAGTGTCCCAACTCCCATCC
CGACCAATCAAAAACACATGTGCCGATCTCCCCTTCCTCGCCTACTCTAT
GCGTTACCTGCAGAGCACCGGCTCAGCCAATCTTGATGCTGCTCCTGCAT
CGTACGCCGAGCTGGATGAGATGCCTACGGAGCTCCCTTCGACCTCGGCC
TTGGATGCTTTCCTCGAGGAATGGGAACGAAAGTTGGACGCCAAACGAGG
TGTGGAGAACGAGAAGAGGTCCACGGTCATAGAGAAAGCACGGGCAGAGC
TGGCGAAATTCGCGGAGGAGCGAGAGGAGATGAGAGAGAAGAAGCAGAGT
GCGAACAGGAAGGAGGAGCAGGTGAAGCTAGAGAAGCTGGAGGCCGACTT
GGAGGCGGAGAATCCCTGGGAGCGTGTGATAAGCCTCATTGATATGCAAA
CTGACGTGGGGGGGCCAGAGTCGCCCTCCTGCGACCTGCAACGGCTGAAG
CAGATGCTGATCCAACTCAAGGCGGAACCGTTGGGGGAAAAGAAATAG
back to top

protein sequence of NO25G01600.1

>NO25G01600.1-protein ID=NO25G01600.1-protein|Name=NO25G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MGCRQRSFFLLVVNHRSSSVSQLPSRPIKNTCADLPFLAYSMRYLQSTGS
ANLDAAPASYAELDEMPTELPSTSALDAFLEEWERKLDAKRGVENEKRST
VIEKARAELAKFAEEREEMREKKQSANRKEEQVKLEKLEADLEAENPWER
VISLIDMQTDVGGPESPSCDLQRLKQMLIQLKAEPLGEKK*
back to top

mRNA from alignment at chr25:451772..453419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01600.1 ID=NO25G01600.1|Name=NO25G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at chr25:451772..453419- (Nannochloropsis oceanica)
GGCGTGGGCGATGCTTCTTACAATGTAAGTTTGGGGGCATGTCTATTTAT
CTAGATCGGTAGAAGAACGAGGACGTGCCAAGCCTGCATAGAGAAATAGT
CAGGAGGCGCAACTGTGGGCATGGCATGGGGTGTCGTCAACGGTCCTTCT
TTCTGCTCGTTGTAAACCATCGCTCATCTTCAGTGTCCCAACTCCCATCC
CGACCAATCAAAAACACATGTGCCGATCTCCCCTTCCTCGCCTACTCTAT
GCGTTACCTGCAGAGCACCGGCTCAGGTATGAACCAATTACTCGCCCCTC
CTAGTCCTGCATTCTTTCGATTCCCCTCCTTCACTGCCCTTGATGCTTCA
TCCGCCCACCCCCTATTGCACTCATCATTCTCTCTCATGCATAAACGCGC
GCACATACGCTTTCCACAGCCAATCTTGATGCTGCTCCTGCATCGTACGC
CGAGCTGGATGAGATGCCTACGGAGCTCCCTTCGACCTCGGCCTTGGAGT
GAGTGCGGGAAAGAGAGGGAGGGAGGGAGGAAGGGTGGGAAGGAGAGACG
GCTGGTTGTTTACTTTATGTGCGGAGTGAATGAGTGCAGGAGCGGTCAAG
AGAAGCCTTTGAGTATTTAAATCAATCAACCATTCTCTACTTTTGAAACT
TCTAGATGTCTTGCCCCCTACTTCTACTTCTACCCAAGTCTACTTCCCTC
CCTCCCTCTTCCTCCCTCCCCACTCCCTTCCCTATTGCCCCACGAATTCC
CAAGGGGGGATGAGAAGGCAAGCTGGAGGCGCAGCGAGGAAGAAACAATG
AGGACCAACCGACCGCCATCACCAACAAAACACACACTACTCACGTTACT
CCTTTCCTCGTTCCTTCCCTCCCTCGTTCCTTCCCCTCCCTCCCTCCTTC
CCCTCCCGTCAGTGCTTTCCTCGAGGAATGGGAACGAAAGTTGGACGCCA
AACGAGGTGTGGAGAACGAGAAGAGGTCCACGGTCATAGAGAAAGCACGG
GCAGAGCTGGCGAAATTCGCGGAGGAGCGAGAGGAGATGAGAGAGAAGAA
GCAGAGTGCGAACAGGAAGGAGGAGCAGGTAACCAGGGCGGGAGGAAGGG
AGGGAGGGACGGAGGGAGGGGGTGGGGAGGGCGGAGGACGGAATGGCGTG
AGATGATGGATGAGAAGAGGCTGAAGGCGAAGAGTGAAGGAGACAGAGGC
GCGATTTTGGTGGTGGCGGCGTGTGAGCCACAGGCCTGACGAGACCACTT
GCACATTCCTCCCTCCCTCCCTCTTTTTCGGGCAAGCTCGAGTAGTAATA
AACTGAGTTGGGGACTGAAGACCTCTGATAGCATGTGATGTAATTGACCT
CATGGATATGATGTAATGATGTAATTGACCTCATAGACGTGTCACTATCG
GCCGCCTCGGTTCCATGGTGCATGTAACTAATCTTCCCCTCCCTTACTCT
CTCCCTCCCCCTTTCCTTCAGGTGAAGCTAGAGAAGCTGGAGGCCGACTT
GGAGGCGGAGAATCCCTGGGAGCGTGTGATAAGCCTCATTGATATGCAAA
CTGACGTGGGGGGGCCAGAGTCGCCCTCCTGCGACCTGCAACGGCTGAAG
CAGATGCTGATCCAACTCAAGGCGGAACCGTTGGGGGAAAAGAAATAG
back to top

Coding sequence (CDS) from alignment at chr25:451772..453419-

>NO25G01600.1 ID=NO25G01600.1|Name=NO25G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr25:451772..453419- (Nannochloropsis oceanica)
ATGGGGTGTCGTCAACGGTCCTTCTTTCTGCTCGTTGTAAACCATCGCTC
ATCTTCAGTGTCCCAACTCCCATCCCGACCAATCAAAAACACATGTGCCG
ATCTCCCCTTCCTCGCCTACTCTATGCGTTACCTGCAGAGCACCGGCTCA
GCCAATCTTGATGCTGCTCCTGCATCGTACGCCGAGCTGGATGAGATGCC
TACGGAGCTCCCTTCGACCTCGGCCTTGGATGCTTTCCTCGAGGAATGGG
AACGAAAGTTGGACGCCAAACGAGGTGTGGAGAACGAGAAGAGGTCCACG
GTCATAGAGAAAGCACGGGCAGAGCTGGCGAAATTCGCGGAGGAGCGAGA
GGAGATGAGAGAGAAGAAGCAGAGTGCGAACAGGAAGGAGGAGCAGGTGA
AGCTAGAGAAGCTGGAGGCCGACTTGGAGGCGGAGAATCCCTGGGAGCGT
GTGATAAGCCTCATTGATATGCAAACTGACGTGGGGGGGCCAGAGTCGCC
CTCCTGCGACCTGCAACGGCTGAAGCAGATGCTGATCCAACTCAAGGCGG
AACCGTTGGGGGAAAAGAAATAG
back to top
Synonyms
Publications