NO25G01590, NO25G01590 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G01590
Unique Name	NO25G01590
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2021
Alignment location	chr25:449028..451048 +

Link to JBrowse

Properties


Property Name	Value
Description	60S ribosomal protein L3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:449028..451048 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0005198	structural molecule activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009000	Transl_B-barrel
IPR000597	Ribosomal_L3

Homology

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: CBJ28620.1 (Ribosomal protein L3 [Ectocarpus siliculosus])

HSP 1 Score: 614.8 bits (1584), Expect = 1.900e-172
Identity = 304/386 (78.76%), Postives = 338/386 (87.56%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASK 387
            MS RKF APR+GSLGFLPKKRTKKHRG IRSFPKDD +K PHLTAFMAYKAGMTH+ REVDR GSK+HKKEVVEAVTILE PP+ VVGVVGYV TP GLRTLTTVWA HLSDE +RRFYK+WY SKKKAFT+YAKK+++AP ++D EL RIK YA VVRVI+HTQ+  +KLRQKKAHI EIQVNGG ++ KVDFA+ L E+ V VD+VF+KDE ID +GASKGHG EGVVTRWGV+RLPRKTHRGLRKVACIGAWHPARVS +VAR GQHGYHHRTE+NKK+YRIGK GD  SA+TEADLT K ITPLGGFPHYG +NEDWLM+KG VIG +KR ITLRKSL +HS+R HLEQ+ LKFIDTSSK GHGRFQT EEK KFLGPLASK
Sbjct:   34 MSHRKFEAPRNGSLGFLPKKRTKKHRGHIRSFPKDDAAKEPHLTAFMAYKAGMTHIAREVDRPGSKVHKKEVVEAVTILETPPIVVVGVVGYVETPKGLRTLTTVWAGHLSDECKRRFYKHWYTSKKKAFTRYAKKFADAPQEIDAELGRIKQYAQVVRVIAHTQVGLVKLRQKKAHICEIQVNGGDVAAKVDFARGLFEQKVPVDAVFAKDECIDVLGASKGHGTEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFSVARAGQHGYHHRTELNKKIYRIGKKGDVASASTEADLTVKHITPLGGFPHYGEINEDWLMLKGCVIGCKKRCITLRKSLMSHSRRIHLEQVELKFIDTSSKYGHGRFQTKEEKDKFLGPLASK 419

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: ETI43909.1 (60S ribosomal protein [Phytophthora parasitica P1569] >ETK83957.1 60S ribosomal protein [Phytophthora parasitica] >ETL37372.1 60S ribosomal protein [Phytophthora parasitica] >ETL90533.1 60S ribosomal protein [Phytophthora parasitica] >ETM43802.1 60S ribosomal protein [Phytophthora parasitica] >ETO72564.1 60S ribosomal protein [Phytophthora parasitica P1976] >ETP13733.1 60S ribosomal protein [Phytophthora parasitica CJ01A1] >ETP41800.1 60S ribosomal protein [Phytophthora parasitica P10297] >KUF81666.1 60S ribosomal protein L3 [Phytophthora nicotianae])

HSP 1 Score: 614.4 bits (1583), Expect = 2.500e-172
Identity = 293/389 (75.32%), Postives = 338/389 (86.89%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  ++ EL RIK Y  VVRV++HTQI+K+KLRQKKAH+LE+QVNGGS++DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYGV+NEDWLMIKG ++GT+KR +TLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGIEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGAAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRALTLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: XP_008907307.1 (60S ribosomal protein L3 [Phytophthora parasitica INRA-310] >ETN07550.1 60S ribosomal protein L3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 614.0 bits (1582), Expect = 3.200e-172
Identity = 293/389 (75.32%), Postives = 338/389 (86.89%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  ++ EL RIK Y  VVRV++HTQI+K+KLRQKKAH+LE+QVNGGS++DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYGV+NEDWLMIKG ++GT+KR +TLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQIRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGIEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGVAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRALTLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: OWZ18683.1 (60S ribosomal protein [Phytophthora megakarya])

HSP 1 Score: 614.0 bits (1582), Expect = 3.200e-172
Identity = 293/389 (75.32%), Postives = 338/389 (86.89%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM YKAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  ++ EL R+K Y  VVRVI+HTQI+K+KLRQKKAH+LE+QVNGGS++DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYGV+NEDWLMIKG ++GT+KR +TLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRMKKYCQVVRVIAHTQIRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGIEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGAAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRALTLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: GAX99118.1 (60S ribosomal protein [Pythium insidiosum])

HSP 1 Score: 612.5 bits (1578), Expect = 9.400e-172
Identity = 292/389 (75.06%), Postives = 339/389 (87.15%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM YKAGMTH+VREVDR GSK+HKKEVVEAVTI+E PPM VVGVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWY+SK+KAFTKY+KK+   P +++ EL RIK Y  VVRV++HTQI+K+ LRQKKAH++E+QVNGGS++DKVDFAKSL EK V V +VF++DE +D IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  +VAR GQHGYHHRTE+NKK+YRIG AGD KSA TEADLTEK ITPLGGFPHYGVV EDW+M+KG V+G +KRV+TLRKSL  H+KR+ LE+I LKFIDTSSK GHGRFQT EEK KFLGPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIVREVDRPGSKVHKKEVVEAVTIVETPPMVVVGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYRSKRKAFTKYSKKYQTNPAEIENELNRIKKYCQVVRVLTHTQIRKVNLRQKKAHLIEVQVNGGSVADKVDFAKSLFEKQVPVSAVFAQDEMVDVIGVTKGHGYEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFSVARAGQHGYHHRTEINKKIYRIGAAGDAKSAMTEADLTEKSITPLGGFPHYGVVKEDWVMLKGAVVGVKKRVLTLRKSLLVHTKRSALEEIKLKFIDTSSKFGHGRFQTAEEKAKFLGPLARQNRA 389

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: XP_009514874.1 (hypothetical protein PHYSODRAFT_284116 [Phytophthora sojae] >EGZ27599.1 hypothetical protein PHYSODRAFT_284116 [Phytophthora sojae])

HSP 1 Score: 612.1 bits (1577), Expect = 1.200e-171
Identity = 290/389 (74.55%), Postives = 337/389 (86.63%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM YKAGMTH++REVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  ++ EL RIK Y  VVRV++HTQ++K+KLRQKKAH+LE+QVNGGS+ DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYG++NEDWLMIKG ++GT+KR +TLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGYKAGMTHIMREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQVRKVKLRQKKAHLLEVQVNGGSVGDKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGIEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGAAGDKKSCMTEQDLTEKDITPLGGFPHYGIINEDWLMIKGAIVGTKKRALTLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

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BLAST of NO25G01590 vs. NCBI_GenBank
Match: XP_002997686.1 (60S ribosomal protein L3 [Phytophthora infestans T30-4] >EEY67987.1 60S ribosomal protein L3 [Phytophthora infestans T30-4])

HSP 1 Score: 612.1 bits (1577), Expect = 1.200e-171
Identity = 290/389 (74.55%), Postives = 338/389 (86.89%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM +KAGMTH+VREVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP  ++ EL RIK Y  VVRV++HTQ++K+KLRQKKAH+LE+QVNGGS++DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YR+G AGD KS  TE DLTEK ITPLGGFPHYGV+NEDWLMIKG ++GT+KR +TLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGFKAGMTHIVREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPADIENELNRIKKYCQVVRVLAHTQVRKVKLRQKKAHLLEVQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGVEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRVGAAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRALTLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

[Close]

BLAST of NO25G01590 vs. NCBI_GenBank
Match: XP_024572798.1 (60s ribosomal protein [Plasmopara halstedii] >CEG36429.1 60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 612.1 bits (1577), Expect = 1.200e-171
Identity = 292/388 (75.26%), Postives = 338/388 (87.11%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNR 389
            M  RKF APRHG LGFLPKKRTK HRG++R FP+DD SK PHLTAFM +KAGMTH++REVDR GSK+HKKE+VE V+I+E PPM V+GVVGY+ TP GLRTLTTV+AEHLS+E++RRFYKNWYKSK+KAFTKYAKK+  AP +++ EL RIK Y  VVRV++HTQ++K+KLRQKKAH+LEIQVNGGS++DKVDFAKSL EK V V +VF+KDE ID IG +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TV R GQHGYHHRTE+NKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYGV+NEDWLMIKG ++GT+KR ITLRKSL  H+KR+ LE+INLKFIDTSSK GHGRFQT EEK K+LGPLA +NR
Sbjct:    1 MGHRKFEAPRHGHLGFLPKKRTKHHRGRVRKFPRDDASKAPHLTAFMGFKAGMTHIMREVDRPGSKVHKKEIVEPVSIVETPPMVVIGVVGYLETPRGLRTLTTVFAEHLSEEVKRRFYKNWYKSKRKAFTKYAKKYQTAPAEIENELNRIKKYCQVVRVLAHTQVRKVKLRQKKAHLLEIQVNGGSVADKVDFAKSLFEKQVPVTAVFAKDEMIDVIGVTKGHGVEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVPRAGQHGYHHRTEINKKIYRIGAAGDKKSCMTEQDLTEKDITPLGGFPHYGVINEDWLMIKGAIVGTKKRAITLRKSLLVHTKRSALEEINLKFIDTSSKFGHGRFQTAEEKAKWLGPLARQNR 388

[Close]

BLAST of NO25G01590 vs. NCBI_GenBank
Match: OQR98574.1 (60S ribosomal protein L3 [Achlya hypogyna])

HSP 1 Score: 572.4 bits (1474), Expect = 1.100e-159
Identity = 282/389 (72.49%), Postives = 319/389 (82.01%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            MS RKF APRHG+LGFLPKKRTK HRG+IR FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKEVVEAVTILE PP+ VVGVVGY+ TP GLRTLTTVWAEHLS+++RRRFYK                       ++ EL R+K Y  V+RVI+HTQI+K+KLRQKKAH+LEIQVNGGSI++KVDFAK+L EK V V SVFS+DE ID  G +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TVAR GQHGYHHRTEVNKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYG +NEDWLM+KG +IG +KR +TLRKSL  H+KRA LE INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDRTKAPHLTAFMGYKAGMTHIVREVDRPGSKLHKKEVVEAVTILETPPLVVVGVVGYLETPRGLRTLTTVWAEHLSEDVRRRFYKXXXXXXXXXXXXXXXXXXXXXXXIENELNRMKKYCQVIRVIAHTQIRKVKLRQKKAHLLEIQVNGGSIAEKVDFAKALFEKQVPVASVFSQDEMIDICGVTKGHGYEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVARAGQHGYHHRTEVNKKIYRIGAAGDAKSCMTEQDLTEKSITPLGGFPHYGEINEDWLMLKGAIIGVKKRALTLRKSLLVHTKRAALEPINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389

[Close]

BLAST of NO25G01590 vs. NCBI_GenBank
Match: AFA52584.1 (ribosomal protein L3 superfamily protein [Vaucheria litorea])

HSP 1 Score: 571.6 bits (1472), Expect = 1.800e-159
Identity = 276/386 (71.50%), Postives = 326/386 (84.46%), Query Frame = 0

Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASK 387
            MS RKF APR GSLGFLPKKRTKKH GKIRSFP DDPSK  HLTAFMAYKAGMTH+VREV+R GSK+HKKE VE VTILE PPM VVGVVGY  TP GL+T+ +VWA HLSDE RRR YKNW+ SKKKAFT YAKK++E P +++ +L++IK +  VVRVI+HTQ+  +KLR KKAHI+EIQVNGG++ +KVDFAK L E+ V + SVFSKDE ID +GA+KGHG +GVV RWGV+RL RKTHRGLRKVACIG+WHPARV+ +VAR GQHGYHHRTE+NKK+YRIG+ GD  S TTEADLT K ITP+GGFPHYG +NEDW+M+KG ++GT+KR +TLRKSL + S R ++E I+LKFIDTSSK GHGRFQT +E+ KF+GPLASK
Sbjct:    1 MSHRKFEAPRKGSLGFLPKKRTKKHFGKIRSFPHDDPSKECHLTAFMAYKAGMTHIVREVERPGSKLHKKETVEPVTILECPPMVVVGVVGYKETPNGLKTVVSVWAGHLSDECRRRMYKNWHSSKKKAFTAYAKKFAEKPEEIERDLKKIKKHCQVVRVIAHTQVGLVKLRVKKAHIMEIQVNGGTVEEKVDFAKGLFERHVPISSVFSKDECIDVLGATKGHGTKGVVARWGVTRLARKTHRGLRKVACIGSWHPARVAFSVARAGQHGYHHRTEINKKIYRIGQKGDEGSCTTEADLTVKSITPMGGFPHYGEINEDWIMVKGGLVGTKKRCVTLRKSLLSLSSRRYMESIDLKFIDTSSKYGHGRFQTSDERDKFMGPLASK 386

The following BLAST results are available for this feature:

BLAST of NO25G01590 vs. NCBI_GenBank

BLAST of NO25G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
CBJ28620.1	1.900e-172	78.76	Ribosomal protein L3 [Ectocarpus siliculosus]	[more]
ETI43909.1	2.500e-172	75.32	60S ribosomal protein [Phytophthora parasitica P15...	[more]
XP_008907307.1	3.200e-172	75.32	60S ribosomal protein L3 [Phytophthora parasitica ...	[more]
OWZ18683.1	3.200e-172	75.32	60S ribosomal protein [Phytophthora megakarya]	[more]
GAX99118.1	9.400e-172	75.06	60S ribosomal protein [Pythium insidiosum]	[more]
XP_009514874.1	1.200e-171	74.55	hypothetical protein PHYSODRAFT_284116 [Phytophtho...	[more]
XP_002997686.1	1.200e-171	74.55	60S ribosomal protein L3 [Phytophthora infestans T...	[more]
XP_024572798.1	1.200e-171	75.26	60s ribosomal protein [Plasmopara halstedii] >CEG3...	[more]
OQR98574.1	1.100e-159	72.49	60S ribosomal protein L3 [Achlya hypogyna]	[more]
AFA52584.1	1.800e-159	71.50	ribosomal protein L3 superfamily protein [Vaucheri...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL045	nonsL045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL044	nonsL044	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR045	ncniR045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR073	ngnoR073	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR072	ngnoR072	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK004262	NSK004262	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO25G01590.1	NO25G01590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603895	gene_8761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100667g1	gene8757	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO25G01590.1	NO25G01590.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO25G01590 ID=NO25G01590|Name=NO25G01590|organism=Nannochloropsis oceanica|type=gene|length=2021bp
ATGTCTCGTCGTAAGTTCCGTGCCCCCCGCCACGGGTCCCTGGGTTTCCT
Ggtaggtagccttcgctagccctcctctcctctccccctccccctgattt
tccatgcccaggtcaccgtcactcatcgtctcccttcttccgctcatgtc
cactttctcccacaatacagCCCAAGAAGCGTACGAAGAAGCACCGTGGT
AAGATTCGTTCCTTCCCCAAGGATGACCCTTCCAAGCCCCCTCACTTGAC
GGCGTTCATGGCGTACAAGGCGGGCATGACGCACGTTGTGCGCGAGGTAG
ACCGATCGGGCTCCAAGATGCACAAGAAGGAAGTCGTCGAGGCCGTCACC
ATCCTTGAGGCTCCCCCCATGAAGGTGGTGGGTGTGGTAGGCTATGTGGC
TACCCCCACGGGTCTCCGTACCCTCACCACGGTCTGGGCCGAGCATCTGT
CCGACGAGATCCGTCGCCGCTTCTACAAGAATTGGTACAAATCCAAGAAG
AAGGCCTTCACTAAGTATGCCAAGAAGTGGAGCGAGGCTCCCGGCAAGgt
atgagttgtatttatccttcccttccactcctccctccttttccacgctg
tcgtaccccgccgggtgaccctcgaagatgccccgctttctgtcccaccc
acccattcccgccctcccccccctctccctccctgccacagGTGGACGAG
GAGCTCCAGCGCATCAAGGACTACGCGGACGTGGTGCGCGTCATCTCACA
CACCCAGATCAAGAAGCTGAAGCTCCGTCAGAAGAAGGCACACATCCTCG
AGATTCAAGTCAATGGTGGCTCCATCTCCGACAAGGTCGATTTCGCCAAG
TCCCTGCTTGAGAAGgtgagctatccctccaatcctccctctcctcctcc
tcccttcttccctccctcccttttccaatgtccgtctccacttttcagcc
tgagaatagcgtgaaaccctctcaactcatcctgccccccctccctccct
ccattcctcctccccagGATGTGAGTGTGGACTCGGTTTTCTCCAAGGAT
GAGAACATTGACACCATCGGTGCTTCGAAGGGTCATGGGCGTGAGGGTGT
GGTGACCCGCTGGGGCGTTTCCCGCCTTCCGCGTAAGACCCACCGTGGTC
TCCGCAAGgtaagccctccctccctccctccttccctccctcgtttgtcc
acaccccccgtcgttgcacttgttgaagaggtgcactctctacacgttct
caccctccctccctccccctttccctttctcccatccctagGTCGCCTGT
ATTGGTGCTTGGCACCCTGCCCGTGTTTCTCGTACCGTTGCTCGTGGCGG
CCAGCATGGGTACCATCACCGAACGGAGGTGAACAAGAAGGTCTACCGCA
TTGGCAAGGCTGGTGATGGGAAGAGCGCCACCACCGAGGCCGATTTGACG
GAGAAAgtgaggagggggaagggaaggagggagggagggaaagagaagga
ggcatccccatgcccaaaaatcgattctcgacagaccaaacaacacggac
actcacacgcccctccttccctccctccccccctccctccccagGGCATC
ACCCCCCTCGGTGGCTTCCCCCACTACGGCGTGGTGAACGAGGACTGGCT
CATGATCAAGGGCCAGGTCATCGGCACCCGCAAGCGCGTCATCACTCTCC
GGAAATCCCTTCGTGCCCACTCCAAGCGGGCGCACCTCGAGCAAATCAAC
CTCAAGTTTATCGACACCAGgtacggcttcccttcctccctccctccctc
cctgccttttctccctctttctctaccaccaccttccctcctcatcactc
cccagtcgctgatctgtcctctgtcccgacccatatccatcttcgtccct
catctccctccctccctccctccctcgtaccaacagTTCGAAGCTAGGTC
ACGGCCGCTTCCAGACGGACGAGGAGAAGCACAAATTCCTGGGACCGTTG
GCGAGCAAGAACCGCGCATAG

protein sequence of NO25G01590.1

>NO25G01590.1-protein ID=NO25G01590.1-protein|Name=NO25G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYK
AGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLR
TLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQR
IKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLE
KDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVA
CIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADL
TEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAH
LEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA*

Synonyms

Publications