NO25G01590.1, NO25G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01590.1
Unique NameNO25G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr25:449028..451048 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:449028..451048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01590.1 vs.
Match: OQR98574.1 (60S ribosomal protein L3 [Achlya hypogyna])

HSP 1 Score: 621.3 bits (1601), Expect = 2.000e-174
Identity = 300/389 (77.12%), Postives = 340/389 (87.40%), Query Frame = 0 
Query:    1 MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYKAGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLRTLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQRIKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLEKDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVACIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADLTEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAHLEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA 390
            MS RKF APRHG+LGFLPKKRTK HRG+IR FP+DD +K PHLTAFM YKAGMTH+VREVDR GSK+HKKEVVEAVTILE PP+ VVGVVGY+ TP GLRTLTTVWAEHLS+++RRRFYKNWYKSKKKAFTKYAKK++E P +++ EL R+K Y  V+RVI+HTQI+K+KLRQKKAH+LEIQVNGGSI++KVDFAK+L EK V V SVFS+DE ID  G +KGHG EGV+TRWGV+RLPRKTHRGLRKVACIGAWHP+RV  TVAR GQHGYHHRTEVNKK+YRIG AGD KS  TE DLTEK ITPLGGFPHYG +NEDWLM+KG +IG +KR +TLRKSL  H+KRA LE INLKFIDTSSK GHGRFQT EEK K++GPLA +NRA
Sbjct:    1 MSHRKFEAPRHGNLGFLPKKRTKHHRGRIRKFPRDDRTKAPHLTAFMGYKAGMTHIVREVDRPGSKLHKKEVVEAVTILETPPLVVVGVVGYLETPRGLRTLTTVWAEHLSEDVRRRFYKNWYKSKKKAFTKYAKKYTEKPAEIENELNRMKKYCQVIRVIAHTQIRKVKLRQKKAHLLEIQVNGGSIAEKVDFAKALFEKQVPVASVFSQDEMIDICGVTKGHGYEGVITRWGVTRLPRKTHRGLRKVACIGAWHPSRVRFTVARAGQHGYHHRTEVNKKIYRIGAAGDAKSCMTEQDLTEKSITPLGGFPHYGEINEDWLMLKGAIIGVKKRALTLRKSLLVHTKRAALEPINLKFIDTSSKFGHGRFQTAEEKAKWMGPLARQNRA 389
The following BLAST results are available for this feature:
BLAST of NO25G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR98574.12.000e-17477.1260S ribosomal protein L3 [Achlya hypogyna][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01590NO25G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01590.1NO25G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01590.1.cds1NO25G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds2NO25G01590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds3NO25G01590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds4NO25G01590.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds5NO25G01590.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds6NO25G01590.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01590.1.cds7NO25G01590.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01590.1 ID=NO25G01590.1|Name=NO25G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGTCTCGTCGTAAGTTCCGTGCCCCCCGCCACGGGTCCCTGGGTTTCCT
GCCCAAGAAGCGTACGAAGAAGCACCGTGGTAAGATTCGTTCCTTCCCCA
AGGATGACCCTTCCAAGCCCCCTCACTTGACGGCGTTCATGGCGTACAAG
GCGGGCATGACGCACGTTGTGCGCGAGGTAGACCGATCGGGCTCCAAGAT
GCACAAGAAGGAAGTCGTCGAGGCCGTCACCATCCTTGAGGCTCCCCCCA
TGAAGGTGGTGGGTGTGGTAGGCTATGTGGCTACCCCCACGGGTCTCCGT
ACCCTCACCACGGTCTGGGCCGAGCATCTGTCCGACGAGATCCGTCGCCG
CTTCTACAAGAATTGGTACAAATCCAAGAAGAAGGCCTTCACTAAGTATG
CCAAGAAGTGGAGCGAGGCTCCCGGCAAGGTGGACGAGGAGCTCCAGCGC
ATCAAGGACTACGCGGACGTGGTGCGCGTCATCTCACACACCCAGATCAA
GAAGCTGAAGCTCCGTCAGAAGAAGGCACACATCCTCGAGATTCAAGTCA
ATGGTGGCTCCATCTCCGACAAGGTCGATTTCGCCAAGTCCCTGCTTGAG
AAGGATGTGAGTGTGGACTCGGTTTTCTCCAAGGATGAGAACATTGACAC
CATCGGTGCTTCGAAGGGTCATGGGCGTGAGGGTGTGGTGACCCGCTGGG
GCGTTTCCCGCCTTCCGCGTAAGACCCACCGTGGTCTCCGCAAGGTCGCC
TGTATTGGTGCTTGGCACCCTGCCCGTGTTTCTCGTACCGTTGCTCGTGG
CGGCCAGCATGGGTACCATCACCGAACGGAGGTGAACAAGAAGGTCTACC
GCATTGGCAAGGCTGGTGATGGGAAGAGCGCCACCACCGAGGCCGATTTG
ACGGAGAAAGGCATCACCCCCCTCGGTGGCTTCCCCCACTACGGCGTGGT
GAACGAGGACTGGCTCATGATCAAGGGCCAGGTCATCGGCACCCGCAAGC
GCGTCATCACTCTCCGGAAATCCCTTCGTGCCCACTCCAAGCGGGCGCAC
CTCGAGCAAATCAACCTCAAGTTTATCGACACCAGTTCGAAGCTAGGTCA
CGGCCGCTTCCAGACGGACGAGGAGAAGCACAAATTCCTGGGACCGTTGG
CGAGCAAGAACCGCGCATAG
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protein sequence of NO25G01590.1

>NO25G01590.1-protein ID=NO25G01590.1-protein|Name=NO25G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MSRRKFRAPRHGSLGFLPKKRTKKHRGKIRSFPKDDPSKPPHLTAFMAYK
AGMTHVVREVDRSGSKMHKKEVVEAVTILEAPPMKVVGVVGYVATPTGLR
TLTTVWAEHLSDEIRRRFYKNWYKSKKKAFTKYAKKWSEAPGKVDEELQR
IKDYADVVRVISHTQIKKLKLRQKKAHILEIQVNGGSISDKVDFAKSLLE
KDVSVDSVFSKDENIDTIGASKGHGREGVVTRWGVSRLPRKTHRGLRKVA
CIGAWHPARVSRTVARGGQHGYHHRTEVNKKVYRIGKAGDGKSATTEADL
TEKGITPLGGFPHYGVVNEDWLMIKGQVIGTRKRVITLRKSLRAHSKRAH
LEQINLKFIDTSSKLGHGRFQTDEEKHKFLGPLASKNRA*
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mRNA from alignment at chr25:449028..451048+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01590.1 ID=NO25G01590.1|Name=NO25G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at chr25:449028..451048+ (Nannochloropsis oceanica)
ATGTCTCGTCGTAAGTTCCGTGCCCCCCGCCACGGGTCCCTGGGTTTCCT
GGTAGGTAGCCTTCGCTAGCCCTCCTCTCCTCTCCCCCTCCCCCTGATTT
TCCATGCCCAGGTCACCGTCACTCATCGTCTCCCTTCTTCCGCTCATGTC
CACTTTCTCCCACAATACAGCCCAAGAAGCGTACGAAGAAGCACCGTGGT
AAGATTCGTTCCTTCCCCAAGGATGACCCTTCCAAGCCCCCTCACTTGAC
GGCGTTCATGGCGTACAAGGCGGGCATGACGCACGTTGTGCGCGAGGTAG
ACCGATCGGGCTCCAAGATGCACAAGAAGGAAGTCGTCGAGGCCGTCACC
ATCCTTGAGGCTCCCCCCATGAAGGTGGTGGGTGTGGTAGGCTATGTGGC
TACCCCCACGGGTCTCCGTACCCTCACCACGGTCTGGGCCGAGCATCTGT
CCGACGAGATCCGTCGCCGCTTCTACAAGAATTGGTACAAATCCAAGAAG
AAGGCCTTCACTAAGTATGCCAAGAAGTGGAGCGAGGCTCCCGGCAAGGT
ATGAGTTGTATTTATCCTTCCCTTCCACTCCTCCCTCCTTTTCCACGCTG
TCGTACCCCGCCGGGTGACCCTCGAAGATGCCCCGCTTTCTGTCCCACCC
ACCCATTCCCGCCCTCCCCCCCCTCTCCCTCCCTGCCACAGGTGGACGAG
GAGCTCCAGCGCATCAAGGACTACGCGGACGTGGTGCGCGTCATCTCACA
CACCCAGATCAAGAAGCTGAAGCTCCGTCAGAAGAAGGCACACATCCTCG
AGATTCAAGTCAATGGTGGCTCCATCTCCGACAAGGTCGATTTCGCCAAG
TCCCTGCTTGAGAAGGTGAGCTATCCCTCCAATCCTCCCTCTCCTCCTCC
TCCCTTCTTCCCTCCCTCCCTTTTCCAATGTCCGTCTCCACTTTTCAGCC
TGAGAATAGCGTGAAACCCTCTCAACTCATCCTGCCCCCCCTCCCTCCCT
CCATTCCTCCTCCCCAGGATGTGAGTGTGGACTCGGTTTTCTCCAAGGAT
GAGAACATTGACACCATCGGTGCTTCGAAGGGTCATGGGCGTGAGGGTGT
GGTGACCCGCTGGGGCGTTTCCCGCCTTCCGCGTAAGACCCACCGTGGTC
TCCGCAAGGTAAGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCGTTTGTCC
ACACCCCCCGTCGTTGCACTTGTTGAAGAGGTGCACTCTCTACACGTTCT
CACCCTCCCTCCCTCCCCCTTTCCCTTTCTCCCATCCCTAGGTCGCCTGT
ATTGGTGCTTGGCACCCTGCCCGTGTTTCTCGTACCGTTGCTCGTGGCGG
CCAGCATGGGTACCATCACCGAACGGAGGTGAACAAGAAGGTCTACCGCA
TTGGCAAGGCTGGTGATGGGAAGAGCGCCACCACCGAGGCCGATTTGACG
GAGAAAGTGAGGAGGGGGAAGGGAAGGAGGGAGGGAGGGAAAGAGAAGGA
GGCATCCCCATGCCCAAAAATCGATTCTCGACAGACCAAACAACACGGAC
ACTCACACGCCCCTCCTTCCCTCCCTCCCCCCCTCCCTCCCCAGGGCATC
ACCCCCCTCGGTGGCTTCCCCCACTACGGCGTGGTGAACGAGGACTGGCT
CATGATCAAGGGCCAGGTCATCGGCACCCGCAAGCGCGTCATCACTCTCC
GGAAATCCCTTCGTGCCCACTCCAAGCGGGCGCACCTCGAGCAAATCAAC
CTCAAGTTTATCGACACCAGGTACGGCTTCCCTTCCTCCCTCCCTCCCTC
CCTGCCTTTTCTCCCTCTTTCTCTACCACCACCTTCCCTCCTCATCACTC
CCCAGTCGCTGATCTGTCCTCTGTCCCGACCCATATCCATCTTCGTCCCT
CATCTCCCTCCCTCCCTCCCTCCCTCGTACCAACAGTTCGAAGCTAGGTC
ACGGCCGCTTCCAGACGGACGAGGAGAAGCACAAATTCCTGGGACCGTTG
GCGAGCAAGAACCGCGCATAG
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Coding sequence (CDS) from alignment at chr25:449028..451048+

>NO25G01590.1 ID=NO25G01590.1|Name=NO25G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr25:449028..451048+ (Nannochloropsis oceanica)
ATGTCTCGTCGTAAGTTCCGTGCCCCCCGCCACGGGTCCCTGGGTTTCCT
GCCCAAGAAGCGTACGAAGAAGCACCGTGGTAAGATTCGTTCCTTCCCCA
AGGATGACCCTTCCAAGCCCCCTCACTTGACGGCGTTCATGGCGTACAAG
GCGGGCATGACGCACGTTGTGCGCGAGGTAGACCGATCGGGCTCCAAGAT
GCACAAGAAGGAAGTCGTCGAGGCCGTCACCATCCTTGAGGCTCCCCCCA
TGAAGGTGGTGGGTGTGGTAGGCTATGTGGCTACCCCCACGGGTCTCCGT
ACCCTCACCACGGTCTGGGCCGAGCATCTGTCCGACGAGATCCGTCGCCG
CTTCTACAAGAATTGGTACAAATCCAAGAAGAAGGCCTTCACTAAGTATG
CCAAGAAGTGGAGCGAGGCTCCCGGCAAGGTGGACGAGGAGCTCCAGCGC
ATCAAGGACTACGCGGACGTGGTGCGCGTCATCTCACACACCCAGATCAA
GAAGCTGAAGCTCCGTCAGAAGAAGGCACACATCCTCGAGATTCAAGTCA
ATGGTGGCTCCATCTCCGACAAGGTCGATTTCGCCAAGTCCCTGCTTGAG
AAGGATGTGAGTGTGGACTCGGTTTTCTCCAAGGATGAGAACATTGACAC
CATCGGTGCTTCGAAGGGTCATGGGCGTGAGGGTGTGGTGACCCGCTGGG
GCGTTTCCCGCCTTCCGCGTAAGACCCACCGTGGTCTCCGCAAGGTCGCC
TGTATTGGTGCTTGGCACCCTGCCCGTGTTTCTCGTACCGTTGCTCGTGG
CGGCCAGCATGGGTACCATCACCGAACGGAGGTGAACAAGAAGGTCTACC
GCATTGGCAAGGCTGGTGATGGGAAGAGCGCCACCACCGAGGCCGATTTG
ACGGAGAAAGGCATCACCCCCCTCGGTGGCTTCCCCCACTACGGCGTGGT
GAACGAGGACTGGCTCATGATCAAGGGCCAGGTCATCGGCACCCGCAAGC
GCGTCATCACTCTCCGGAAATCCCTTCGTGCCCACTCCAAGCGGGCGCAC
CTCGAGCAAATCAACCTCAAGTTTATCGACACCAGTTCGAAGCTAGGTCA
CGGCCGCTTCCAGACGGACGAGGAGAAGCACAAATTCCTGGGACCGTTGG
CGAGCAAGAACCGCGCATAG
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Synonyms
Publications