NO25G01580, NO25G01580 (gene) Nannochloropsis oceanica

Overview
NameNO25G01580
Unique NameNO25G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length955
Alignment locationchr25:447300..448254 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:447300..448254 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029147CFAP77
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO25G01580 vs. NCBI_GenBank
Match: XP_009037833.1 (hypothetical protein AURANDRAFT_64826 [Aureococcus anophagefferens] >EGB07196.1 hypothetical protein AURANDRAFT_64826 [Aureococcus anophagefferens])

HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:   15 PP--FKKVTLIKNCLGKVRSASMSLPPPAYVYGCPQGKDNEGVGQLISKWHESTRRSLTGSGTKPSWIRSNLAALQKGHVTARAQRAYSIRH 105
            PP   KK T+IK+ +G VR+ S  LP   +VYG    KD+E  G ++S+W  ST      S  + S+I++N  AL++G +TA++QRAY+  H
Sbjct: 1435 PPGHLKKKTMIKDRVGSVRTTSYELPEETHVYGKADIKDSENAGVVMSRWIASTPSQPKES--QRSFIKTNKLALKEGCLTAKSQRAYAQDH 1524
The following BLAST results are available for this feature:
BLAST of NO25G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009037833.13.600e-741.30hypothetical protein AURANDRAFT_64826 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004260NSK004260Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01580.1NO25G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633134gene_8760Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01580.1NO25G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01580 ID=NO25G01580|Name=NO25G01580|organism=Nannochloropsis oceanica|type=gene|length=955bp
ATGCCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTT
CAAAAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGT
CCATGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAG
GACAACGAGGGCGTTGGACAGTgtacgtgtagcacacacaggagggaaca
taacgtggaaataataaagaatatgtaatcttcgctgtctgttgttcatt
gtgtgcgtcctttgaagcgtgtccctccttcttcccccacatctcttcat
gcttccacattttcagacttcttcctcttgatcactctcttacacacact
tgactaccccctctctcccctccaaaatagTGATATCTAAATGGCATGAG
TCCACCCGCCGTTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCG
GAGCAACCTTGCAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGC
GTGCCTACAGCATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACC
ATCCTTCGGAAAAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAA
GAAGGACAAAGGGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGG
AAGAGGTCATCTTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAG
GAGGTGCTCGAAGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAG
GGATTACCCTCTGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGC
CCCGGCCCACAAAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAG
GCAGCCGCAGCCCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAAT
GTGGAAAATGTCTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGG
CATAA
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protein sequence of NO25G01580.1

>NO25G01580.1-protein ID=NO25G01580.1-protein|Name=NO25G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MPSHTGTTTKASHGPPFKKVTLIKNCLGKVRSASMSLPPPAYVYGCPQGK
DNEGVGQLISKWHESTRRSLTGSGTKPSWIRSNLAALQKGHVTARAQRAY
SIRHPRFLPDPSLTILRKKTMATKTLIKKTKKDKGRESGGKEEEEEEEEV
IFGRPSGTNDTTMKEVLEGRFNPEMAGDQERDYPLIGDRILYGRVPKPRP
TKASALLQLAKEEEAAAALKKEKERLGDVTMWKMSKWDKVEPKVVVWA*
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Synonyms
Publications