NO25G01580.1, NO25G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01580.1
Unique NameNO25G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr25:447300..448254 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:447300..448254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01580.1 vs.
Match: XP_009037833.1 (hypothetical protein AURANDRAFT_64826 [Aureococcus anophagefferens]; EGB07196.1 hypothetical protein AURANDRAFT_64826 [Aureococcus anophagefferens])

HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:   15 PP--FKKVTLIKNCLGKVRSASMSLPPPAYVYGCPQGKDNEGVGQLISKWHESTRRSLTGSGTKPSWIRSNLAALQKGHVTARAQRAYSIRH 105
            PP   KK T+IK+ +G VR+ S  LP   +VYG    KD+E  G ++S+W  ST      S  + S+I++N  AL++G +TA++QRAY+  H
Sbjct: 1435 PPGHLKKKTMIKDRVGSVRTTSYELPEETHVYGKADIKDSENAGVVMSRWIASTPSQPKES--QRSFIKTNKLALKEGCLTAKSQRAYAQDH 1524
The following BLAST results are available for this feature:
BLAST of NO25G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009037833.13.600e-741.30hypothetical protein AURANDRAFT_64826 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01580NO25G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01580.1NO25G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01580.1.cds1NO25G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01580.1.cds2NO25G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01580.1 ID=NO25G01580.1|Name=NO25G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGCCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTT
CAAAAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGT
CCATGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAG
GACAACGAGGGCGTTGGACAGTTGATATCTAAATGGCATGAGTCCACCCG
CCGTTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCGGAGCAACC
TTGCAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGCGTGCCTAC
AGCATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACCATCCTTCG
GAAAAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAAGAAGGACA
AAGGGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGGAAGAGGTC
ATCTTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAGGAGGTGCT
CGAAGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAGGGATTACC
CTCTGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGCCCCGGCCC
ACAAAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAGGCAGCCGC
AGCCCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAATGTGGAAAA
TGTCTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGGCATAA
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protein sequence of NO25G01580.1

>NO25G01580.1-protein ID=NO25G01580.1-protein|Name=NO25G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MPSHTGTTTKASHGPPFKKVTLIKNCLGKVRSASMSLPPPAYVYGCPQGK
DNEGVGQLISKWHESTRRSLTGSGTKPSWIRSNLAALQKGHVTARAQRAY
SIRHPRFLPDPSLTILRKKTMATKTLIKKTKKDKGRESGGKEEEEEEEEV
IFGRPSGTNDTTMKEVLEGRFNPEMAGDQERDYPLIGDRILYGRVPKPRP
TKASALLQLAKEEEAAAALKKEKERLGDVTMWKMSKWDKVEPKVVVWA*
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mRNA from alignment at chr25:447300..448254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01580.1 ID=NO25G01580.1|Name=NO25G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=955bp|location=Sequence derived from alignment at chr25:447300..448254+ (Nannochloropsis oceanica)
ATGCCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTT
CAAAAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGT
CCATGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAG
GACAACGAGGGCGTTGGACAGTGTACGTGTAGCACACACAGGAGGGAACA
TAACGTGGAAATAATAAAGAATATGTAATCTTCGCTGTCTGTTGTTCATT
GTGTGCGTCCTTTGAAGCGTGTCCCTCCTTCTTCCCCCACATCTCTTCAT
GCTTCCACATTTTCAGACTTCTTCCTCTTGATCACTCTCTTACACACACT
TGACTACCCCCTCTCTCCCCTCCAAAATAGTGATATCTAAATGGCATGAG
TCCACCCGCCGTTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCG
GAGCAACCTTGCAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGC
GTGCCTACAGCATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACC
ATCCTTCGGAAAAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAA
GAAGGACAAAGGGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGG
AAGAGGTCATCTTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAG
GAGGTGCTCGAAGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAG
GGATTACCCTCTGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGC
CCCGGCCCACAAAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAG
GCAGCCGCAGCCCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAAT
GTGGAAAATGTCTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGG
CATAA
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Coding sequence (CDS) from alignment at chr25:447300..448254+

>NO25G01580.1 ID=NO25G01580.1|Name=NO25G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr25:447300..448254+ (Nannochloropsis oceanica)
ATGCCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTT
CAAAAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGT
CCATGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAG
GACAACGAGGGCGTTGGACAGTTGATATCTAAATGGCATGAGTCCACCCG
CCGTTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCGGAGCAACC
TTGCAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGCGTGCCTAC
AGCATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACCATCCTTCG
GAAAAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAAGAAGGACA
AAGGGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGGAAGAGGTC
ATCTTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAGGAGGTGCT
CGAAGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAGGGATTACC
CTCTGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGCCCCGGCCC
ACAAAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAGGCAGCCGC
AGCCCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAATGTGGAAAA
TGTCTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGGCATAA
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Synonyms
Publications