NO25G01570, NO25G01570 (gene) Nannochloropsis oceanica

Overview
NameNO25G01570
Unique NameNO25G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1682
Alignment locationchr25:445084..446765 -

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Properties
Property NameValue
DescriptionZinc finger FYVE-type protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:445084..446765 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR000306Znf_FYVE
Homology
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: EWM21674.1 (Zinc finger FYVE-type protein [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 1.400e-40
Identity = 81/152 (53.29%), Postives = 101/152 (66.45%), Query Frame = 0 
Query:   31 AILLGAAALGASVNHYTHPPRQSTLIIHQQEHPSSHPNPQDQYHPPEDASYSYLRRQSQPPLRLINSTRLNTR-PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALL 182
            A+LLGAA +G +V+ Y  PPRQ  LI+  Q     H NP   Y     A+Y Y+ R +Q   ++ N++ L    PP WRL  HC+VCFV FG+   RHHCRNCGRS+C  HS KR+PLPHWG+LNYVRVCD CH VVM C+R G PY P++L
Sbjct:   23 ALLLGAALVGTAVSRYIRPPRQELLIVQPQ-----HGNPAPTYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSML 169
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BLAST of NO25G01570 vs. NCBI_GenBank
Match: GAY02152.1 (Hypothetical protein PINS_009985 [Pythium insidiosum])

HSP 1 Score: 94.7 bits (234), Expect = 5.200e-16
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 0 
Query:   38 ALGASVNHYTHPPRQSTLIIHQQEHPSSHPNPQDQYHP---PEDASYSYLRRQSQPPLRLINSTRLNTRPPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGA 175
            ALG S    T    +      Q++  SS  +P +   P   P DA  +  R  +      +++ + +   P W+L ++C +C+V FG F  RHHCRNCG SVCG HS + +PLPH+G     RVCD CH+ + + +   A
Sbjct:  162 ALGRSTTELTKTQXR------QKQEQSSADDPIEDADPVRWPVDAPTNTDRTAASN----VDNDKNSVHAPQWKLSKNCHICYVKFGYFRNRHHCRNCGESVCGRHSKRFVPLPHFGLFRSQRVCDACHEQLQSFYSVDA 291
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BLAST of NO25G01570 vs. NCBI_GenBank
Match: CCA18679.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.2 bits (217), Expect = 4.800e-14
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHD 165
            PP W+L++ C++C + F  F  RHHCRNCG SVC  HS +R+PL H G L+  RVC  C+D
Sbjct:  202 PPCWKLEKRCKICLLKFSYFKSRHHCRNCGESVCNTHSNRRIPLQHIGLLSPQRVCILCYD 262
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BLAST of NO25G01570 vs. NCBI_GenBank
Match: GAX92151.1 (Hypothetical protein PINS_000074 [Pythium insidiosum])

HSP 1 Score: 87.4 bits (215), Expect = 8.300e-14
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 0 
Query:   83 YLRRQSQPPLRLINSTRLNTRPPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHD 165
            Y +R     LR     R +  PP W+L + C VC + F  F  RHHCRNCG SVCG HS++RLPL H+G     RVC  C+D
Sbjct:  207 YEKRSEMSTLR-AGPFRQHALPPRWQLDKKCNVCQLKFSYFKSRHHCRNCGLSVCGTHSSQRLPLRHFGLETPQRVCIMCYD 287
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: XP_009526219.1 (hypothetical protein PHYSODRAFT_559881 [Phytophthora sojae] >EGZ17161.1 hypothetical protein PHYSODRAFT_559881 [Phytophthora sojae])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  226 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLKTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 306
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: ETI45252.1 (hypothetical protein F443_10119 [Phytophthora parasitica P1569] >ETM45058.1 hypothetical protein L914_09786 [Phytophthora parasitica] >ETO73877.1 hypothetical protein F444_10216 [Phytophthora parasitica P1976] >ETP43132.1 hypothetical protein F442_10027 [Phytophthora parasitica P10297])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  222 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLRTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 302
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: ETK85213.1 (hypothetical protein L915_09907 [Phytophthora parasitica] >ETL38628.1 hypothetical protein L916_09817 [Phytophthora parasitica] >ETP15070.1 hypothetical protein F441_10059 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  222 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLRTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 302
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: ETL91760.1 (hypothetical protein L917_09735 [Phytophthora parasitica])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  222 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLRTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 302
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: ETM45024.1 (hypothetical protein L914_09787, partial [Phytophthora parasitica])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  222 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLRTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 302
[Close]
BLAST of NO25G01570 vs. NCBI_GenBank
Match: XP_008893211.1 (hypothetical protein PPTG_01595 [Phytophthora parasitica INRA-310] >ETN21412.1 hypothetical protein PPTG_01595 [Phytophthora parasitica INRA-310])

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = 0 
Query:  104 PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQH 188
            PP WRL + C +C + F  F  RHHCR+CG SVC  HS KRLPL H G     RVC  C+D   +    GAP     +  H +H
Sbjct:  222 PPRWRLDKRCNICQLKFSYFKTRHHCRSCGESVCSTHSNKRLPLHHLGLRTPQRVCILCYD---DLRENGAPSAVVNMYGHGRH 302
The following BLAST results are available for this feature:
BLAST of NO25G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21674.11.400e-4053.29Zinc finger FYVE-type protein [Nannochloropsis gad... [more]
GAY02152.15.200e-1635.00Hypothetical protein PINS_009985 [Pythium insidios... [more]
CCA18679.14.800e-1452.46conserved hypothetical protein [Albugo laibachii N... [more]
GAX92151.18.300e-1447.56Hypothetical protein PINS_000074 [Pythium insidios... [more]
XP_009526219.17.000e-1345.24hypothetical protein PHYSODRAFT_559881 [Phytophtho... [more]
ETI45252.17.000e-1345.24hypothetical protein F443_10119 [Phytophthora para... [more]
ETK85213.17.000e-1345.24hypothetical protein L915_09907 [Phytophthora para... [more]
ETL91760.17.000e-1345.24hypothetical protein L917_09735 [Phytophthora para... [more]
ETM45024.17.000e-1345.24hypothetical protein L914_09787, partial [Phytopht... [more]
XP_008893211.17.000e-1345.24hypothetical protein PPTG_01595 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL044nonsL044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR072ngnoR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004259NSK004259Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01570.1NO25G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218451gene_8759Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100667g2gene8756Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01570.1NO25G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01570 ID=NO25G01570|Name=NO25G01570|organism=Nannochloropsis oceanica|type=gene|length=1682bp
CAGCACAGGCAAGCCTTTTCAGACTCATCACACTCCTCCGCGCCATCGTC
TCTACCTCATCTCAATCCGAGCGTCATGACCCGATCGCACCACCATCACA
ACGGGTGCCAGCACCAGCACCATTACCAGCAGCAGCAGCAGCAGCAAGGC
CATGGCCACCCTGATGCCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTC
CGgtatgtatgtgacaaagcggcggtgatttataccttgtcctctttaag
gaccgtcgttggcacctctcacgacaaacacctacaatttttatatgact
ccctctcttccttctcattacaacacacacagTCAACCACTACACCCACC
CACCGCGGCAGTCGACTCTCATCATTCATCAGCAAGAGCACCCCTCATCC
CACCCCAATCCTCAAGACCAATATCACCCTCCCGAAGATGCAAGCTACTC
CTATTTAAGACGTCAGAGCCAACCTCCCCTTCGTCTTATCAATTCTACCC
GTCTCAACACCCGTCCCCCGGGCTGGCGGCTTCAACGGCATTGCGAAGTG
TGTTTCGTGACCTTTGGTGTATTCAATGGTCGGCATCACTGTCGAAACTG
CGGGCGGTCTGTCTGTGGCATTCATTCCACGAAACGCTTGCCGCTACCAC
ATTGGGGGTTCTTGAATTATGTGAGAGTGTGTGATGAGTGTCATGACGTG
GTGATGAACTGTTTTCGAACGGGTGCGCCGTATCACCCAGCTCTCCTCCC
GGAGCACCCGCAGCATCAGCATTACCACCAGCAGCAAGTACCACAGGAAA
GGGTGGTGTTTGGACAGCATTGGGAGGGTGGAGTGACGACGATGGCTTAT
ACTCACCCTTATCCACCCATGGGTATGGGGATGGAGGGAGGGATAGGGGT
AAGAATGGTTGGGGGAGGTTTGAATGGAAATGCCAATGTCTGTGTACCTG
TTTCCGGTCAATACGGGCAGCAGATTACAGCGTTGCCTTATGCGGAGCCG
GTGGCACAGGGCGCGGCGCCTAAAGATATGTGGATGACTGCGAGCGTACA
GCAGCAGGAGCAGGCGCAGCAGCATCCCGACTATCCAACACAGCCATCAG
CGCCTCCGATGCCGGGGGGAGACTAAAAAAAGATGATATACTGTTCAGGT
TTTGAAATAAGCTGTAAAAATAAATGTACTTGGCACATTATCTGTAGGCC
AAAGTGAGGACAGCTCTTGCAGCGGGTGGTGATACCATACTCCCACGTAC
AAAAAGCCATTCGGTTGAGATGGGCATTTGCTGACCTCCTCCTCACCCTC
CTGGTGTCTCTCGTTCTCTTTTCTTTCGCTCCTGTCAGTCGCGCACTGCA
TCGGCGGTGTTGCCGCATCTTTGTTATCTGCTCATATCGATAAGCATGAC
GACAACAAGCAGGGGAACAGGCAGAGTGCAGGGATTTAATAAATGGCAAC
TTCGTGGCCCATAGACACCTAGACCCAGACCTCGTCTCTCGGTGGTCGCG
CTCAGGTCACTTTATTGGCCTCACGCGCGTGGACTGCGGCCCGAGCTCAG
ATTAGGGCGGTGATCATGCCCTAACGGGATTTTGATACCCCTACTGGGCA
TGGACGATTATCACGCGGAGCGCGCTTCCAATGCGATTTGCAGTGTGTCG
CGCCATAAAGTCACTTAAAACGGAGGAGATAC
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protein sequence of NO25G01570.1

>NO25G01570.1-protein ID=NO25G01570.1-protein|Name=NO25G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MTRSHHHHNGCQHQHHYQQQQQQQGHGHPDAILLGAAALGASVNHYTHPP
RQSTLIIHQQEHPSSHPNPQDQYHPPEDASYSYLRRQSQPPLRLINSTRL
NTRPPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHW
GFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQHQHYHQQQVPQERV
VFGQHWEGGVTTMAYTHPYPPMGMGMEGGIGVRMVGGGLNGNANVCVPVS
GQYGQQITALPYAEPVAQGAAPKDMWMTASVQQQEQAQQHPDYPTQPSAP
PMPGGD*
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Synonyms
Publications