NO25G01570.1, NO25G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01570.1
Unique NameNO25G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1552
Alignment locationchr25:445084..446765 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:445084..446765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01570.1 vs.
Match: EWM21674.1 (Zinc finger FYVE-type protein [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 4.800e-46
Identity = 95/182 (52.20%), Postives = 117/182 (64.29%), Query Frame = 0 
Query:    1 MTRSHHHHNGCQHQHHYQQQQQQQGHGHPDAILLGAAALGASVNHYTHPPRQSTLIIHQQEHPSSHPNPQDQYHPPEDASYSYLRRQSQPPLRLINSTRLNTR-PPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWGFLNYVRVCDECHDVVMNCFRTGAPYHPALL 182
            MTRS +HH GC+ Q H Q        GHP A+LLGAA +G +V+ Y  PPRQ  LI+  Q     H NP   Y     A+Y Y+ R +Q   ++ N++ L    PP WRL  HC+VCFV FG+   RHHCRNCGRS+C  HS KR+PLPHWG+LNYVRVCD CH VVM C+R G PY P++L
Sbjct:    1 MTRSRYHHGGCRQQQHPQ--------GHPGALLLGAALVGTAVSRYIRPPRQELLIVQPQ-----HGNPAPTYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSML 169
The following BLAST results are available for this feature:
BLAST of NO25G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21674.14.800e-4652.20Zinc finger FYVE-type protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01570NO25G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01570.1NO25G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01570.1.cds1NO25G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01570.1.cds2NO25G01570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01570.1 ID=NO25G01570.1|Name=NO25G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp
CAGCACAGGCAAGCCTTTTCAGACTCATCACACTCCTCCGCGCCATCGTC
TCTACCTCATCTCAATCCGAGCGTCATGACCCGATCGCACCACCATCACA
ACGGGTGCCAGCACCAGCACCATTACCAGCAGCAGCAGCAGCAGCAAGGC
CATGGCCACCCTGATGCCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTC
CGTCAACCACTACACCCACCCACCGCGGCAGTCGACTCTCATCATTCATC
AGCAAGAGCACCCCTCATCCCACCCCAATCCTCAAGACCAATATCACCCT
CCCGAAGATGCAAGCTACTCCTATTTAAGACGTCAGAGCCAACCTCCCCT
TCGTCTTATCAATTCTACCCGTCTCAACACCCGTCCCCCGGGCTGGCGGC
TTCAACGGCATTGCGAAGTGTGTTTCGTGACCTTTGGTGTATTCAATGGT
CGGCATCACTGTCGAAACTGCGGGCGGTCTGTCTGTGGCATTCATTCCAC
GAAACGCTTGCCGCTACCACATTGGGGGTTCTTGAATTATGTGAGAGTGT
GTGATGAGTGTCATGACGTGGTGATGAACTGTTTTCGAACGGGTGCGCCG
TATCACCCAGCTCTCCTCCCGGAGCACCCGCAGCATCAGCATTACCACCA
GCAGCAAGTACCACAGGAAAGGGTGGTGTTTGGACAGCATTGGGAGGGTG
GAGTGACGACGATGGCTTATACTCACCCTTATCCACCCATGGGTATGGGG
ATGGAGGGAGGGATAGGGGTAAGAATGGTTGGGGGAGGTTTGAATGGAAA
TGCCAATGTCTGTGTACCTGTTTCCGGTCAATACGGGCAGCAGATTACAG
CGTTGCCTTATGCGGAGCCGGTGGCACAGGGCGCGGCGCCTAAAGATATG
TGGATGACTGCGAGCGTACAGCAGCAGGAGCAGGCGCAGCAGCATCCCGA
CTATCCAACACAGCCATCAGCGCCTCCGATGCCGGGGGGAGACTAAAAAA
AGATGATATACTGTTCAGGTTTTGAAATAAGCTGTAAAAATAAATGTACT
TGGCACATTATCTGTAGGCCAAAGTGAGGACAGCTCTTGCAGCGGGTGGT
GATACCATACTCCCACGTACAAAAAGCCATTCGGTTGAGATGGGCATTTG
CTGACCTCCTCCTCACCCTCCTGGTGTCTCTCGTTCTCTTTTCTTTCGCT
CCTGTCAGTCGCGCACTGCATCGGCGGTGTTGCCGCATCTTTGTTATCTG
CTCATATCGATAAGCATGACGACAACAAGCAGGGGAACAGGCAGAGTGCA
GGGATTTAATAAATGGCAACTTCGTGGCCCATAGACACCTAGACCCAGAC
CTCGTCTCTCGGTGGTCGCGCTCAGGTCACTTTATTGGCCTCACGCGCGT
GGACTGCGGCCCGAGCTCAGATTAGGGCGGTGATCATGCCCTAACGGGAT
TTTGATACCCCTACTGGGCATGGACGATTATCACGCGGAGCGCGCTTCCA
ATGCGATTTGCAGTGTGTCGCGCCATAAAGTCACTTAAAACGGAGGAGAT
AC
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protein sequence of NO25G01570.1

>NO25G01570.1-protein ID=NO25G01570.1-protein|Name=NO25G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MTRSHHHHNGCQHQHHYQQQQQQQGHGHPDAILLGAAALGASVNHYTHPP
RQSTLIIHQQEHPSSHPNPQDQYHPPEDASYSYLRRQSQPPLRLINSTRL
NTRPPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHW
GFLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQHQHYHQQQVPQERV
VFGQHWEGGVTTMAYTHPYPPMGMGMEGGIGVRMVGGGLNGNANVCVPVS
GQYGQQITALPYAEPVAQGAAPKDMWMTASVQQQEQAQQHPDYPTQPSAP
PMPGGD*
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mRNA from alignment at chr25:445084..446765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01570.1 ID=NO25G01570.1|Name=NO25G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp|location=Sequence derived from alignment at chr25:445084..446765- (Nannochloropsis oceanica)
CAGCACAGGCAAGCCTTTTCAGACTCATCACACTCCTCCGCGCCATCGTC
TCTACCTCATCTCAATCCGAGCGTCATGACCCGATCGCACCACCATCACA
ACGGGTGCCAGCACCAGCACCATTACCAGCAGCAGCAGCAGCAGCAAGGC
CATGGCCACCCTGATGCCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTC
CGGTATGTATGTGACAAAGCGGCGGTGATTTATACCTTGTCCTCTTTAAG
GACCGTCGTTGGCACCTCTCACGACAAACACCTACAATTTTTATATGACT
CCCTCTCTTCCTTCTCATTACAACACACACAGTCAACCACTACACCCACC
CACCGCGGCAGTCGACTCTCATCATTCATCAGCAAGAGCACCCCTCATCC
CACCCCAATCCTCAAGACCAATATCACCCTCCCGAAGATGCAAGCTACTC
CTATTTAAGACGTCAGAGCCAACCTCCCCTTCGTCTTATCAATTCTACCC
GTCTCAACACCCGTCCCCCGGGCTGGCGGCTTCAACGGCATTGCGAAGTG
TGTTTCGTGACCTTTGGTGTATTCAATGGTCGGCATCACTGTCGAAACTG
CGGGCGGTCTGTCTGTGGCATTCATTCCACGAAACGCTTGCCGCTACCAC
ATTGGGGGTTCTTGAATTATGTGAGAGTGTGTGATGAGTGTCATGACGTG
GTGATGAACTGTTTTCGAACGGGTGCGCCGTATCACCCAGCTCTCCTCCC
GGAGCACCCGCAGCATCAGCATTACCACCAGCAGCAAGTACCACAGGAAA
GGGTGGTGTTTGGACAGCATTGGGAGGGTGGAGTGACGACGATGGCTTAT
ACTCACCCTTATCCACCCATGGGTATGGGGATGGAGGGAGGGATAGGGGT
AAGAATGGTTGGGGGAGGTTTGAATGGAAATGCCAATGTCTGTGTACCTG
TTTCCGGTCAATACGGGCAGCAGATTACAGCGTTGCCTTATGCGGAGCCG
GTGGCACAGGGCGCGGCGCCTAAAGATATGTGGATGACTGCGAGCGTACA
GCAGCAGGAGCAGGCGCAGCAGCATCCCGACTATCCAACACAGCCATCAG
CGCCTCCGATGCCGGGGGGAGACTAAAAAAAGATGATATACTGTTCAGGT
TTTGAAATAAGCTGTAAAAATAAATGTACTTGGCACATTATCTGTAGGCC
AAAGTGAGGACAGCTCTTGCAGCGGGTGGTGATACCATACTCCCACGTAC
AAAAAGCCATTCGGTTGAGATGGGCATTTGCTGACCTCCTCCTCACCCTC
CTGGTGTCTCTCGTTCTCTTTTCTTTCGCTCCTGTCAGTCGCGCACTGCA
TCGGCGGTGTTGCCGCATCTTTGTTATCTGCTCATATCGATAAGCATGAC
GACAACAAGCAGGGGAACAGGCAGAGTGCAGGGATTTAATAAATGGCAAC
TTCGTGGCCCATAGACACCTAGACCCAGACCTCGTCTCTCGGTGGTCGCG
CTCAGGTCACTTTATTGGCCTCACGCGCGTGGACTGCGGCCCGAGCTCAG
ATTAGGGCGGTGATCATGCCCTAACGGGATTTTGATACCCCTACTGGGCA
TGGACGATTATCACGCGGAGCGCGCTTCCAATGCGATTTGCAGTGTGTCG
CGCCATAAAGTCACTTAAAACGGAGGAGATAC
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Coding sequence (CDS) from alignment at chr25:445084..446765-

>NO25G01570.1 ID=NO25G01570.1|Name=NO25G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr25:445084..446765- (Nannochloropsis oceanica)
ATGACCCGATCGCACCACCATCACAACGGGTGCCAGCACCAGCACCATTA
CCAGCAGCAGCAGCAGCAGCAAGGCCATGGCCACCCTGATGCCATACTTT
TGGGCGCGGCAGCGTTGGGCGCGTCCGTCAACCACTACACCCACCCACCG
CGGCAGTCGACTCTCATCATTCATCAGCAAGAGCACCCCTCATCCCACCC
CAATCCTCAAGACCAATATCACCCTCCCGAAGATGCAAGCTACTCCTATT
TAAGACGTCAGAGCCAACCTCCCCTTCGTCTTATCAATTCTACCCGTCTC
AACACCCGTCCCCCGGGCTGGCGGCTTCAACGGCATTGCGAAGTGTGTTT
CGTGACCTTTGGTGTATTCAATGGTCGGCATCACTGTCGAAACTGCGGGC
GGTCTGTCTGTGGCATTCATTCCACGAAACGCTTGCCGCTACCACATTGG
GGGTTCTTGAATTATGTGAGAGTGTGTGATGAGTGTCATGACGTGGTGAT
GAACTGTTTTCGAACGGGTGCGCCGTATCACCCAGCTCTCCTCCCGGAGC
ACCCGCAGCATCAGCATTACCACCAGCAGCAAGTACCACAGGAAAGGGTG
GTGTTTGGACAGCATTGGGAGGGTGGAGTGACGACGATGGCTTATACTCA
CCCTTATCCACCCATGGGTATGGGGATGGAGGGAGGGATAGGGGTAAGAA
TGGTTGGGGGAGGTTTGAATGGAAATGCCAATGTCTGTGTACCTGTTTCC
GGTCAATACGGGCAGCAGATTACAGCGTTGCCTTATGCGGAGCCGGTGGC
ACAGGGCGCGGCGCCTAAAGATATGTGGATGACTGCGAGCGTACAGCAGC
AGGAGCAGGCGCAGCAGCATCCCGACTATCCAACACAGCCATCAGCGCCT
CCGATGCCGGGGGGAGACTAA
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Synonyms
Publications