NO25G01410, NO25G01410 (gene) Nannochloropsis oceanica

Overview
NameNO25G01410
Unique NameNO25G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2144
Alignment locationchr25:398723..400866 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA polymerase II subunit B1 CTD phosphatase Rpap2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:398723..400866 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007308DUF408
Vocabulary: Biological Process
TermDefinition
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain
Vocabulary: Molecular Function
TermDefinition
GO:0043175RNA polymerase core enzyme binding
GO:0008420RNA polymerase II CTD heptapeptide repeat phosphatase activity
Homology
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BLAST of NO25G01410 vs. NCBI_GenBank
Match: EWM20977.1 (Protein of unknown function DUF408 [Nannochloropsis gaditana])

HSP 1 Score: 421.4 bits (1082), Expect = 4.300e-114
Identity = 281/541 (51.94%), Postives = 356/541 (65.80%), Query Frame = 0 
Query:   10 PTKRLPKPGLQGPEKQLLDAKLLEMQLGLLSIDEPATEQELRDCQLWFSPEHFAGVVEELASDGHCGYPLCKKQLLSELGGDRDISHSRRLQKPGQKRLDIRRKQIVDVTRVNAMFCSDLCEGAAHSFVAQLSTEGIFFRPIARTYLQQQ------QQLKSLPPTFVYDMVSKAHKGELKKTKEVEKE--EERGGSTQPAQKEGEEDKSQDRLPVRARRRSLPKKVQVSNISAMNRKNALTTKGEDDRLPLKMGVMERESPAAPQPLSVWVAQGEAVEGYVARMGVSVRGYDDPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPFGAKVIRLKDLAEGARTVVEEDFYMQLWSSLSGWLTPASRQYISLLVQNGGDEKAALRIVHANPTDPLQLQRALLDVQQREGALGCMLVHHVTAAMEAVGLGRRLSPSAATSRIKGLLSTFDMYRPLPPYLGSKHYMAMAMLFVEALF---VSELEGAGNGEEKNXXXXXXXXRKLYLEKVGLSKAEYTSLRGDLE 540
            P +R PK GLQGPE +L+DAKLLEMQ  LLS +EP TE EL  CQ WF PEHFAGVVEELA++GHCG+P+CKK L +  GG           K GQKR+D++ K++VD+T+V+AMFCSD+CEGAA SF+AQLSTEGI FRP+AR YL Q+      Q+L +  P++VYD+V+K H+    +   V+K   + +       +++ EE      +PV                   + +  +   G++ R PLKM V+ERE P AP+PLSVW  +G+ VEG+     +S    +  R                    XXXXXXXXXXXXXXXXXXXXXXXXXXX E FGA V  L+ L   A  +V  DF++QLWS+LS W++PAS QY++LL  NGGDE AALR VH NPTDPLQ+QRALLDVQQRE ALG ML HHVT AME +GL + L+PS  T R++GLLSTFD+YRPLP +L S HY AMA+LF+E LF   ++ELEG     E+ XXXXXX  ++  L+K+ LS AEY SL+ DLE
Sbjct:   60 PQQRQPKRGLQGPETELIDAKLLEMQFKLLSTNEPVTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGS-----GASGVKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRPVARAYLAQKRAQAAGQELVTPSPSYVYDLVAKRHEA---RGNPVDKNGMDRKANKAMACEEKNEEGPGPPGVPVPXXXXXXXXXXXXXXXXXCDSEK-MELGGKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVEGHAVSDMLSGTQKERRR---------------VEEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFGAPVGHLRSLVREAPAMVAGDFFLQLWSTLSSWVSPASHQYVALLASNGGDENAALRTVHGNPTDPLQVQRALLDVQQRERALGGMLAHHVTGAMEIMGLTKALAPSTGTHRLQGLLSTFDLYRPLPSFLSSAHYTAMALLFMEVLFQGELTELEG-----EEXXXXXXXRLKESVLQKLKLSTAEYASLKRDLE 571
The following BLAST results are available for this feature:
BLAST of NO25G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20977.14.300e-11451.94Protein of unknown function DUF408 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004282NSK004282Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01410.1NO25G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|217798gene_8742Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01410.1NO25G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01410 ID=NO25G01410|Name=NO25G01410|organism=Nannochloropsis oceanica|type=gene|length=2144bp
TCATAATGCTAAGTTCTTTGCCGTCAGTGTTGTGGGAAGAGGAGACCGAA
GACATGCACATAATTTATTTCGGCTACTAGAGGAGGTTAAACACCTCCAT
ACCATAAATTATATGACACAGAAACAACATGAGTCTTCATTTCATATGAG
CTCAGTCTCGTTATAGGTGATTTATCCTGTGAAGGATATAGTCAGTACGG
GGGAAGGTGAGAGGTATCGCAGCATGGCGCAGCAATGCAGCACTTGCCCA
CTCTTCCCCTCATGCATTCTGGTCTATCGTACCGCTCAAATCTCATACAT
GCTATCTTTTTTTCTTTCGCTCTCTGTCAATCAGGTTTGGTGGTGCGCAT
GCAACGAGCATAATCAAGCTTCTCACTTGCCCAACTCTGGCCATGACCTC
CCGGCCGTCTCCGCTGCAACCCACCAAGCGCTTGCCCAAGCCTGGCTTGC
AGGGCCCGGAGAAGCAGCTGCTGGATGCCAAGCTATTAGAGATGCAATTG
GGTCTATTGTCTATCGATGAGgttaggagggaagggaaaagggcgggagg
acggcattgtgatcatttcctccaggcattcacatgcggtatcgccacac
gcattaacacagCCCGCGACCGAACAAGAGCTCCGGGACTGCCAACTCTG
GTTCAGTCCCGAGCATTTTGCGGGAGTAGTGGAAGAGCTAGCCTCGGATG
GACACTGTGGTTATCCCCTTTGTAAGAAGCAACTCCTAAGCGAGCTTGGC
GGCGACCGCGACATCTCCCACAGCCGACGTCTCCAGAAACCGGGACAGAA
ACGCCTGGACATACGCCGCAAGCAAATAGTGGACGTCACCCGAGTTAACG
CCATGTTTTGCAGCGATCTTTGCGAAGGAGCAGCCCATTCGTTTGTCGCC
CAGCTCTCCACGGAAGGCATCTTCTTTCGACCCATTGCCCGCACCTATTT
ACAGCAACAGCAGCAGCTCAAGTCTTTGCCTCCTACGTTTGTGTACGACA
TGGTCTCGAAAGCGCACAAGGGAGAATTGAAAAAGACAAAGGAGGTCGAA
AAGGAGGAAGAGAGAGGAGGCAGCACACAGCCGGCACAGAAGGAAGGGGA
GGAAGACAAATCTCAGGACCGTCTCCCTGTCCGCGCACGTCGTCGGTCCC
TCCCAAAGAAAGTGCAGGTCAGTAACATCAGCGCTATGAACAGGAAGAAC
GCACTGACAACAAAGGGGGAAGATGATCGTTTGCCTCTCAAAATGGGAGT
AATGGAGAGAGAAAGCCCAGCGGCACCCCAACCCTTGAGCGTGTGGGTAG
CGCAGGGGGAAGCGGTAGAGGGGTATGTGGCCAGGATGGGGGTATCTGTA
AGAGGATATGATGATCCTCGGGGGGGAGAGCAAGAGGAAGAACGGTTCAA
GGAAGGGGAGGAAGGGGAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGCGAGGTGGTGGTAACAGCGGCAGGAGACGAGGACGACGAC
ACGGACGAGCGAGATGAGCCGTTTGGGGCCAAAGTTATTCGATTGAAAGA
TTTGGCAGAAGGTGCCCGGACAGTGGTGGAAGAAGACTTTTACATGCAGT
TGTGGTCCAGTTTGAGTGGGTGGCTTACCCCCGCTTCTCGTCAATATATT
TCTCTCTTAGTCCAGAACGGCGGAGACGAAAAAGCGGCCTTGAGAATTGT
GCATGCGAATCCAACGGACCCTCTACAATTGCAGCGGGCCTTGTTGGATG
TCCAGCAGAGGGAGGGGGCGTTGGGGTGTATGTTGGTGCATCACGTGACG
GCTGCCATGGAGGCCGTAGGATTGGGGAGGAGATTGTCGCCCTCCGCGGC
GACGAGTCGAATTAAGGGGTTGTTGTCGACGTTTGATATGTATCGACCGT
TGCCCCCGTATTTGGGCTCGAAGCATTACATGGCTATGGCGATGCTGTTT
GTCGAGGCGTTGTTTGTGTCCGAGTTGGAAGGAGCGGGAAATGGGGAGGA
GAAAAATAGAGGGGAGGAAAAAGAGAAGGAGAGGAAGTTATACCTGGAGA
AAGTGGGTTTATCGAAGGCCGAATATACGTCCCTACGAGGGGATCTGGAA
CAGCCATTGTAAATTATGAAATAAAAAGGAAATAAAAATTGGGT
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protein sequence of NO25G01410.1

>NO25G01410.1-protein ID=NO25G01410.1-protein|Name=NO25G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MTSRPSPLQPTKRLPKPGLQGPEKQLLDAKLLEMQLGLLSIDEPATEQEL
RDCQLWFSPEHFAGVVEELASDGHCGYPLCKKQLLSELGGDRDISHSRRL
QKPGQKRLDIRRKQIVDVTRVNAMFCSDLCEGAAHSFVAQLSTEGIFFRP
IARTYLQQQQQLKSLPPTFVYDMVSKAHKGELKKTKEVEKEEERGGSTQP
AQKEGEEDKSQDRLPVRARRRSLPKKVQVSNISAMNRKNALTTKGEDDRL
PLKMGVMERESPAAPQPLSVWVAQGEAVEGYVARMGVSVRGYDDPRGGEQ
EEERFKEGEEGEGGEEEEEEEEEEEGEVVVTAAGDEDDDTDERDEPFGAK
VIRLKDLAEGARTVVEEDFYMQLWSSLSGWLTPASRQYISLLVQNGGDEK
AALRIVHANPTDPLQLQRALLDVQQREGALGCMLVHHVTAAMEAVGLGRR
LSPSAATSRIKGLLSTFDMYRPLPPYLGSKHYMAMAMLFVEALFVSELEG
AGNGEEKNRGEEKEKERKLYLEKVGLSKAEYTSLRGDLEQPL*
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Synonyms
Publications