NO25G01410.1, NO25G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01410.1
Unique NameNO25G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2053
Alignment locationchr25:398723..400866 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:398723..400866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G01410.1 vs.
Match: EWM20977.1 (Protein of unknown function DUF408 [Nannochloropsis gaditana])

HSP 1 Score: 443.0 bits (1138), Expect = 1.400e-120
Identity = 269/542 (49.63%), Postives = 355/542 (65.50%), Query Frame = 0 
Query:   10 PTKRLPKPGLQGPEKQLLDAKLLEMQLGLLSIDEPATEQELRDCQLWFSPEHFAGVVEELASDGHCGYPLCKKQLLSELGGDRDISHSRRLQKPGQKRLDIRRKQIVDVTRVNAMFCSDLCEGAAHSFVAQLSTEGIFFRPIARTYLQQQ------QQLKSLPPTFVYDMVSKAHKGELKKTKEVEKE--EERGGSTQPAQKEGEEDKSQDRLPVRARRRSL-PKKVQVSNISAMNRKNALTTKGEDDRLPLKMGVMERESPAAPQPLSVWVAQGEAVEGYVARMGVSVRGYDDPRGGEQEEERFKEGEEGEGGEEEEEEEEEEEGEVVVTAAGDEDDDTDERDEPFGAKVIRLKDLAEGARTVVEEDFYMQLWSSLSGWLTPASRQYISLLVQNGGDEKAALRIVHANPTDPLQLQRALLDVQQREGALGCMLVHHVTAAMEAVGLGRRLSPSAATSRIKGLLSTFDMYRPLPPYLGSKHYMAMAMLFVEALF---VSELEGAGNGEEKNRGEEKEKERKLYLEKVGLSKAEYTSLRGDLE 540
            P +R PK GLQGPE +L+DAKLLEMQ  LLS +EP TE EL  CQ WF PEHFAGVVEELA++GHCG+P+CKK L +  GG           K GQKR+D++ K++VD+T+V+AMFCSD+CEGAA SF+AQLSTEGI FRP+AR YL Q+      Q+L +  P++VYD+V+K H+    +   V+K   + +       +++ EE      +PV    +   P  +   +    + K  L   G++ R PLKM V+ERE P AP+PLSVW  +G+ VEG+     +S        G ++E  R +EG   +G  +E EE+EEE    V    GD +D     DE FGA V  L+ L   A  +V  DF++QLWS+LS W++PAS QY++LL  NGGDE AALR VH NPTDPLQ+QRALLDVQQRE ALG ML HHVT AME +GL + L+PS  T R++GLLSTFD+YRPLP +L S HY AMA+LF+E LF   ++ELEG     E++  E++E+ ++  L+K+ LS AEY SL+ DLE
Sbjct:   60 PQQRQPKRGLQGPETELIDAKLLEMQFKLLSTNEPVTEVELYACQPWFLPEHFAGVVEELAAEGHCGHPVCKKTLNATQGGSGASG-----VKVGQKRVDMKAKKVVDITQVHAMFCSDVCEGAARSFLAQLSTEGICFRPVARAYLAQKRAQAAGQELVTPSPSYVYDLVAKRHEA---RGNPVDKNGMDRKANKAMACEEKNEEGPGPPGVPVPPPGQPRGPPGLGTGHEGCDSEKMELG--GKEGRGPLKMKVLERERPVAPRPLSVWTTRGDIVEGHAVSDMLS--------GTQKERRRVEEGRPRDGEGQEGEEKEEES---VSMGRGDGED----ADEAFGAPVGHLRSLVREAPAMVAGDFFLQLWSTLSSWVSPASHQYVALLASNGGDENAALRTVHGNPTDPLQVQRALLDVQQRERALGGMLAHHVTGAMEIMGLTKALAPSTGTHRLQGLLSTFDLYRPLPSFLSSAHYTAMALLFMEVLFQGELTELEG-----EEDEQEQRERLKESVLQKLKLSTAEYASLKRDLE 571
The following BLAST results are available for this feature:
BLAST of NO25G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20977.11.400e-12049.63Protein of unknown function DUF408 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01410NO25G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01410.1NO25G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01410.1.cds1NO25G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01410.1.cds2NO25G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01410.1 ID=NO25G01410.1|Name=NO25G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp
TCATAATGCTAAGTTCTTTGCCGTCAGTGTTGTGGGAAGAGGAGACCGAA
GACATGCACATAATTTATTTCGGCTACTAGAGGAGGTTAAACACCTCCAT
ACCATAAATTATATGACACAGAAACAACATGAGTCTTCATTTCATATGAG
CTCAGTCTCGTTATAGGTGATTTATCCTGTGAAGGATATAGTCAGTACGG
GGGAAGGTGAGAGGTATCGCAGCATGGCGCAGCAATGCAGCACTTGCCCA
CTCTTCCCCTCATGCATTCTGGTCTATCGTACCGCTCAAATCTCATACAT
GCTATCTTTTTTTCTTTCGCTCTCTGTCAATCAGGTTTGGTGGTGCGCAT
GCAACGAGCATAATCAAGCTTCTCACTTGCCCAACTCTGGCCATGACCTC
CCGGCCGTCTCCGCTGCAACCCACCAAGCGCTTGCCCAAGCCTGGCTTGC
AGGGCCCGGAGAAGCAGCTGCTGGATGCCAAGCTATTAGAGATGCAATTG
GGTCTATTGTCTATCGATGAGCCCGCGACCGAACAAGAGCTCCGGGACTG
CCAACTCTGGTTCAGTCCCGAGCATTTTGCGGGAGTAGTGGAAGAGCTAG
CCTCGGATGGACACTGTGGTTATCCCCTTTGTAAGAAGCAACTCCTAAGC
GAGCTTGGCGGCGACCGCGACATCTCCCACAGCCGACGTCTCCAGAAACC
GGGACAGAAACGCCTGGACATACGCCGCAAGCAAATAGTGGACGTCACCC
GAGTTAACGCCATGTTTTGCAGCGATCTTTGCGAAGGAGCAGCCCATTCG
TTTGTCGCCCAGCTCTCCACGGAAGGCATCTTCTTTCGACCCATTGCCCG
CACCTATTTACAGCAACAGCAGCAGCTCAAGTCTTTGCCTCCTACGTTTG
TGTACGACATGGTCTCGAAAGCGCACAAGGGAGAATTGAAAAAGACAAAG
GAGGTCGAAAAGGAGGAAGAGAGAGGAGGCAGCACACAGCCGGCACAGAA
GGAAGGGGAGGAAGACAAATCTCAGGACCGTCTCCCTGTCCGCGCACGTC
GTCGGTCCCTCCCAAAGAAAGTGCAGGTCAGTAACATCAGCGCTATGAAC
AGGAAGAACGCACTGACAACAAAGGGGGAAGATGATCGTTTGCCTCTCAA
AATGGGAGTAATGGAGAGAGAAAGCCCAGCGGCACCCCAACCCTTGAGCG
TGTGGGTAGCGCAGGGGGAAGCGGTAGAGGGGTATGTGGCCAGGATGGGG
GTATCTGTAAGAGGATATGATGATCCTCGGGGGGGAGAGCAAGAGGAAGA
ACGGTTCAAGGAAGGGGAGGAAGGGGAGGGGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGCGAGGTGGTGGTAACAGCGGCAGGAGACGAG
GACGACGACACGGACGAGCGAGATGAGCCGTTTGGGGCCAAAGTTATTCG
ATTGAAAGATTTGGCAGAAGGTGCCCGGACAGTGGTGGAAGAAGACTTTT
ACATGCAGTTGTGGTCCAGTTTGAGTGGGTGGCTTACCCCCGCTTCTCGT
CAATATATTTCTCTCTTAGTCCAGAACGGCGGAGACGAAAAAGCGGCCTT
GAGAATTGTGCATGCGAATCCAACGGACCCTCTACAATTGCAGCGGGCCT
TGTTGGATGTCCAGCAGAGGGAGGGGGCGTTGGGGTGTATGTTGGTGCAT
CACGTGACGGCTGCCATGGAGGCCGTAGGATTGGGGAGGAGATTGTCGCC
CTCCGCGGCGACGAGTCGAATTAAGGGGTTGTTGTCGACGTTTGATATGT
ATCGACCGTTGCCCCCGTATTTGGGCTCGAAGCATTACATGGCTATGGCG
ATGCTGTTTGTCGAGGCGTTGTTTGTGTCCGAGTTGGAAGGAGCGGGAAA
TGGGGAGGAGAAAAATAGAGGGGAGGAAAAAGAGAAGGAGAGGAAGTTAT
ACCTGGAGAAAGTGGGTTTATCGAAGGCCGAATATACGTCCCTACGAGGG
GATCTGGAACAGCCATTGTAAATTATGAAATAAAAAGGAAATAAAAATTG
GGT
back to top

protein sequence of NO25G01410.1

>NO25G01410.1-protein ID=NO25G01410.1-protein|Name=NO25G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MTSRPSPLQPTKRLPKPGLQGPEKQLLDAKLLEMQLGLLSIDEPATEQEL
RDCQLWFSPEHFAGVVEELASDGHCGYPLCKKQLLSELGGDRDISHSRRL
QKPGQKRLDIRRKQIVDVTRVNAMFCSDLCEGAAHSFVAQLSTEGIFFRP
IARTYLQQQQQLKSLPPTFVYDMVSKAHKGELKKTKEVEKEEERGGSTQP
AQKEGEEDKSQDRLPVRARRRSLPKKVQVSNISAMNRKNALTTKGEDDRL
PLKMGVMERESPAAPQPLSVWVAQGEAVEGYVARMGVSVRGYDDPRGGEQ
EEERFKEGEEGEGGEEEEEEEEEEEGEVVVTAAGDEDDDTDERDEPFGAK
VIRLKDLAEGARTVVEEDFYMQLWSSLSGWLTPASRQYISLLVQNGGDEK
AALRIVHANPTDPLQLQRALLDVQQREGALGCMLVHHVTAAMEAVGLGRR
LSPSAATSRIKGLLSTFDMYRPLPPYLGSKHYMAMAMLFVEALFVSELEG
AGNGEEKNRGEEKEKERKLYLEKVGLSKAEYTSLRGDLEQPL*
back to top

mRNA from alignment at chr25:398723..400866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01410.1 ID=NO25G01410.1|Name=NO25G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp|location=Sequence derived from alignment at chr25:398723..400866- (Nannochloropsis oceanica)
TCATAATGCTAAGTTCTTTGCCGTCAGTGTTGTGGGAAGAGGAGACCGAA
GACATGCACATAATTTATTTCGGCTACTAGAGGAGGTTAAACACCTCCAT
ACCATAAATTATATGACACAGAAACAACATGAGTCTTCATTTCATATGAG
CTCAGTCTCGTTATAGGTGATTTATCCTGTGAAGGATATAGTCAGTACGG
GGGAAGGTGAGAGGTATCGCAGCATGGCGCAGCAATGCAGCACTTGCCCA
CTCTTCCCCTCATGCATTCTGGTCTATCGTACCGCTCAAATCTCATACAT
GCTATCTTTTTTTCTTTCGCTCTCTGTCAATCAGGTTTGGTGGTGCGCAT
GCAACGAGCATAATCAAGCTTCTCACTTGCCCAACTCTGGCCATGACCTC
CCGGCCGTCTCCGCTGCAACCCACCAAGCGCTTGCCCAAGCCTGGCTTGC
AGGGCCCGGAGAAGCAGCTGCTGGATGCCAAGCTATTAGAGATGCAATTG
GGTCTATTGTCTATCGATGAGGTTAGGAGGGAAGGGAAAAGGGCGGGAGG
ACGGCATTGTGATCATTTCCTCCAGGCATTCACATGCGGTATCGCCACAC
GCATTAACACAGCCCGCGACCGAACAAGAGCTCCGGGACTGCCAACTCTG
GTTCAGTCCCGAGCATTTTGCGGGAGTAGTGGAAGAGCTAGCCTCGGATG
GACACTGTGGTTATCCCCTTTGTAAGAAGCAACTCCTAAGCGAGCTTGGC
GGCGACCGCGACATCTCCCACAGCCGACGTCTCCAGAAACCGGGACAGAA
ACGCCTGGACATACGCCGCAAGCAAATAGTGGACGTCACCCGAGTTAACG
CCATGTTTTGCAGCGATCTTTGCGAAGGAGCAGCCCATTCGTTTGTCGCC
CAGCTCTCCACGGAAGGCATCTTCTTTCGACCCATTGCCCGCACCTATTT
ACAGCAACAGCAGCAGCTCAAGTCTTTGCCTCCTACGTTTGTGTACGACA
TGGTCTCGAAAGCGCACAAGGGAGAATTGAAAAAGACAAAGGAGGTCGAA
AAGGAGGAAGAGAGAGGAGGCAGCACACAGCCGGCACAGAAGGAAGGGGA
GGAAGACAAATCTCAGGACCGTCTCCCTGTCCGCGCACGTCGTCGGTCCC
TCCCAAAGAAAGTGCAGGTCAGTAACATCAGCGCTATGAACAGGAAGAAC
GCACTGACAACAAAGGGGGAAGATGATCGTTTGCCTCTCAAAATGGGAGT
AATGGAGAGAGAAAGCCCAGCGGCACCCCAACCCTTGAGCGTGTGGGTAG
CGCAGGGGGAAGCGGTAGAGGGGTATGTGGCCAGGATGGGGGTATCTGTA
AGAGGATATGATGATCCTCGGGGGGGAGAGCAAGAGGAAGAACGGTTCAA
GGAAGGGGAGGAAGGGGAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGCGAGGTGGTGGTAACAGCGGCAGGAGACGAGGACGACGAC
ACGGACGAGCGAGATGAGCCGTTTGGGGCCAAAGTTATTCGATTGAAAGA
TTTGGCAGAAGGTGCCCGGACAGTGGTGGAAGAAGACTTTTACATGCAGT
TGTGGTCCAGTTTGAGTGGGTGGCTTACCCCCGCTTCTCGTCAATATATT
TCTCTCTTAGTCCAGAACGGCGGAGACGAAAAAGCGGCCTTGAGAATTGT
GCATGCGAATCCAACGGACCCTCTACAATTGCAGCGGGCCTTGTTGGATG
TCCAGCAGAGGGAGGGGGCGTTGGGGTGTATGTTGGTGCATCACGTGACG
GCTGCCATGGAGGCCGTAGGATTGGGGAGGAGATTGTCGCCCTCCGCGGC
GACGAGTCGAATTAAGGGGTTGTTGTCGACGTTTGATATGTATCGACCGT
TGCCCCCGTATTTGGGCTCGAAGCATTACATGGCTATGGCGATGCTGTTT
GTCGAGGCGTTGTTTGTGTCCGAGTTGGAAGGAGCGGGAAATGGGGAGGA
GAAAAATAGAGGGGAGGAAAAAGAGAAGGAGAGGAAGTTATACCTGGAGA
AAGTGGGTTTATCGAAGGCCGAATATACGTCCCTACGAGGGGATCTGGAA
CAGCCATTGTAAATTATGAAATAAAAAGGAAATAAAAATTGGGT
back to top

Coding sequence (CDS) from alignment at chr25:398723..400866-

>NO25G01410.1 ID=NO25G01410.1|Name=NO25G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr25:398723..400866- (Nannochloropsis oceanica)
ATGACCTCCCGGCCGTCTCCGCTGCAACCCACCAAGCGCTTGCCCAAGCC
TGGCTTGCAGGGCCCGGAGAAGCAGCTGCTGGATGCCAAGCTATTAGAGA
TGCAATTGGGTCTATTGTCTATCGATGAGCCCGCGACCGAACAAGAGCTC
CGGGACTGCCAACTCTGGTTCAGTCCCGAGCATTTTGCGGGAGTAGTGGA
AGAGCTAGCCTCGGATGGACACTGTGGTTATCCCCTTTGTAAGAAGCAAC
TCCTAAGCGAGCTTGGCGGCGACCGCGACATCTCCCACAGCCGACGTCTC
CAGAAACCGGGACAGAAACGCCTGGACATACGCCGCAAGCAAATAGTGGA
CGTCACCCGAGTTAACGCCATGTTTTGCAGCGATCTTTGCGAAGGAGCAG
CCCATTCGTTTGTCGCCCAGCTCTCCACGGAAGGCATCTTCTTTCGACCC
ATTGCCCGCACCTATTTACAGCAACAGCAGCAGCTCAAGTCTTTGCCTCC
TACGTTTGTGTACGACATGGTCTCGAAAGCGCACAAGGGAGAATTGAAAA
AGACAAAGGAGGTCGAAAAGGAGGAAGAGAGAGGAGGCAGCACACAGCCG
GCACAGAAGGAAGGGGAGGAAGACAAATCTCAGGACCGTCTCCCTGTCCG
CGCACGTCGTCGGTCCCTCCCAAAGAAAGTGCAGGTCAGTAACATCAGCG
CTATGAACAGGAAGAACGCACTGACAACAAAGGGGGAAGATGATCGTTTG
CCTCTCAAAATGGGAGTAATGGAGAGAGAAAGCCCAGCGGCACCCCAACC
CTTGAGCGTGTGGGTAGCGCAGGGGGAAGCGGTAGAGGGGTATGTGGCCA
GGATGGGGGTATCTGTAAGAGGATATGATGATCCTCGGGGGGGAGAGCAA
GAGGAAGAACGGTTCAAGGAAGGGGAGGAAGGGGAGGGGGGGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGCGAGGTGGTGGTAACAGCGGCAG
GAGACGAGGACGACGACACGGACGAGCGAGATGAGCCGTTTGGGGCCAAA
GTTATTCGATTGAAAGATTTGGCAGAAGGTGCCCGGACAGTGGTGGAAGA
AGACTTTTACATGCAGTTGTGGTCCAGTTTGAGTGGGTGGCTTACCCCCG
CTTCTCGTCAATATATTTCTCTCTTAGTCCAGAACGGCGGAGACGAAAAA
GCGGCCTTGAGAATTGTGCATGCGAATCCAACGGACCCTCTACAATTGCA
GCGGGCCTTGTTGGATGTCCAGCAGAGGGAGGGGGCGTTGGGGTGTATGT
TGGTGCATCACGTGACGGCTGCCATGGAGGCCGTAGGATTGGGGAGGAGA
TTGTCGCCCTCCGCGGCGACGAGTCGAATTAAGGGGTTGTTGTCGACGTT
TGATATGTATCGACCGTTGCCCCCGTATTTGGGCTCGAAGCATTACATGG
CTATGGCGATGCTGTTTGTCGAGGCGTTGTTTGTGTCCGAGTTGGAAGGA
GCGGGAAATGGGGAGGAGAAAAATAGAGGGGAGGAAAAAGAGAAGGAGAG
GAAGTTATACCTGGAGAAAGTGGGTTTATCGAAGGCCGAATATACGTCCC
TACGAGGGGATCTGGAACAGCCATTGTAA
back to top
Synonyms
Publications